Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005665.1

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Reverse (-)

123718 .. 124194

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005665.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgaacaatgaagatgccgaggccatcattcagaacattgggcctctagcagtaaaaagatacaaattttcagatgtaaggaaaatgaccgactcatttaaagataaactgggccaaggcggttatggtgatgtgtacgaaggtaagctactgaatggttgtcatgtggctgtgaaggtacttaaagaatccaaagggaatggagaggactttgtcaatgaggttgccagcattagtagaacttcccatgtaaatgtggtctctcttttggggtattgctttgaaggtaagaaaaaagcgctcatatatgagttcatgcccaatggatcacttgagaagttcgtatatacagacagtaatcctttgaaaactactccacacttggaattggaaagactctttcaaatttctatcgggatagctcgagggctggagtacttgcaccgtggggtgcaacacacgaatcctgcactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

158

Amino Acids

17.61

Weight (kDa)

7.77

Isoelectric Point (pI)

12.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	65, 405
AfaI	GTAC	3 cut(s)	137, 180, 437
AfeI	AGCGCT	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	284, 367, 404
AluBI	AGCT	2 cut(s)	148, 422
AluI	AGCT	2 cut(s)	148, 422
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	423
Aor51HI	AGCGCT	1 cut(s)	300
AoxI	GGCC	3 cut(s)	21, 41, 112
ApoI	RAATTY	2 cut(s)	65, 405
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	41, 112
AsuHPI	GGTGA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	423
BarI	GAAGNNNNNNTAC	2 cut(s)	132, 164
BccI	CCATC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	302
BmcAI	AGTACT	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	2 cut(s)	41, 112
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	18, 115, 445
Bse1I	ACTGG	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	18, 115, 445
BseNI	ACTGG	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	23, 43, 114
BsiHKCI	CYCGRG	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	265
BsnI	GGCC	3 cut(s)	23, 43, 114
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	326
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	3 cut(s)	23, 43, 114
BspPI	GGATC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	18, 115, 445
BssMI	GATC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	356, 446
BstC8I	GCNNGC	1 cut(s)	229
BstDSI	CCRYGG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	23, 43, 114
BtgI	CCRYGG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	41, 112
Csp6I	GTAC	3 cut(s)	136, 179, 436
CviAII	CATG	3 cut(s)	164, 248, 316
CviJI	RGCY	7 cut(s)	23, 43, 114, 148, 170, 422, 430
CviKI_1	RGCY	7 cut(s)	23, 43, 114, 148, 170, 422, 430
CviQI	GTAC	3 cut(s)	136, 179, 436
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
DraI	TTTAAA	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	265
Eco47III	AGCGCT	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	167, 251, 319
FaiI	YATR	9 cut(s)	126, 165, 249, 305, 307, 309, 317, 346, 348
FatI	CATG	3 cut(s)	163, 247, 315
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	23, 43, 114
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	167, 251, 319
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	4 cut(s)	92, 188, 396, 463
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	33, 73
Hpy188III	TCNNGA	1 cut(s)	415
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	134, 169, 278
HpyCH4III	ACNGT	2 cut(s)	356, 446
HpyCH4V	TGCA	3 cut(s)	442, 454, 470
Hsp92II	CATG	3 cut(s)	167, 251, 319
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	326
LpnPI	CCDG	3 cut(s)	95, 241, 416
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	47
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	1 cut(s)	23
MluCI	AATT	3 cut(s)	65, 386, 405
MlyI	GAGTC	2 cut(s)	86, 390
MnlI	CCTC	5 cut(s)	13, 54, 199, 214, 419
MseI	TTAA	2 cut(s)	99, 183
MslI	CAYNNNNRTG	1 cut(s)	252
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	3 cut(s)	167, 251, 319
NmeAIII	GCCGAG	1 cut(s)	43
PaeR7I	CTCGAG	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	188, 463
PflFI	GACNNNGTC	1 cut(s)	212
PleI	GAGTC	2 cut(s)	86, 390
PpsI	GAGTC	2 cut(s)	86, 390
PspPI	GGNCC	2 cut(s)	41, 112
PspXI	VCTCGAGB	1 cut(s)	423
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	3 cut(s)	137, 180, 437
RsaNI	GTAC	3 cut(s)	136, 179, 436
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	99, 183
Sau3AI	GATC	1 cut(s)	326
Sau96I	GGNCC	2 cut(s)	41, 112
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	2 cut(s)	86, 390
SetI	ASST	6 cut(s)	145, 150, 180, 225, 289, 424
SfaNI	GCATC	1 cut(s)	4
Sfr274I	CTCGAG	1 cut(s)	423
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	332, 423
SmoI	CTYRAG	2 cut(s)	332, 423
Sse9I	AATT	3 cut(s)	65, 386, 405
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	356, 446
TaqI	TCGA	1 cut(s)	424
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	65, 386, 405
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	188, 463
Tru1I	TTAA	2 cut(s)	99, 183
Tru9I	TTAA	2 cut(s)	99, 183
TspDTI	ATGAA	3 cut(s)	17, 24, 304
Tth111I	GACNNNGTC	1 cut(s)	212
XapI	RAATTY	2 cut(s)	65, 405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	423
XspI	CTAG	1 cut(s)	47
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.