Rh4CG160400

Extensin-2-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
35165290 .. 35169865
4576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG160400.1

Sequence Viewer

Length: 3219 bp
ATGAGGAGTTCGAGTGGCGACCCCCCCTCTCGGGGTCGTCTTTGGCCGCAAATGGCCGTGGCTTTTGCAGCCATAGTTGTCGTCCTTTCGAGCAATGTGGGTTCAGTTCAAGCTGATCATCCTTACCTTTACTCTTCACCCCCACCGCCTTATGTCTACAGCTCGCCACCACCCCCCGTTCACTCTCCTCCACCACCGTACGTGTACAAGTCACCGCCTCCACCATCGCCTTCACCACCTCCTCCTTACGTGTACAAGTCACCTCCCCCACCATCGCCTTCACCACATCCTCCTTATGTCTACAAGTCACCTCCCCCACCATCGCCTTCACCACCACCTCCTTACGTCTACAAGTCACCCCCTCCACCATCGCCTTCTCCACCACCGCCGTATGTGTACAAGTCTCCTCCACCTCCCTCACCTAAATTGCCTCCGTACGAGTACAAGTCACCACCACCTCCATCACCTTCTCCCCCACCACCATACGTCTACAAGTCTCCACCGCCTCCTTCCCCATCTCCACCACCACCTTACTACTACAAATCTCCTCCACCTCCAGCACATTCTCCACCACCACCTTACTATTACAAATCTCCTCCACCTCCAGCACATTCTCCACCACCACCTTACTATTACAAATCTCCTCCACCTCCAGCACATTCTTCACCACCACCTTACTACTATAAGTCTCCTCCTCCACCTTCTCCCTCACCACCGCCACCATACTACTACAAGTCCCCCCCACCTCCTTCTCCCTCACCTCCTCCACCATACATCTACAAATCCCCTCCACCACCTTCCCCATCTCCTCCTCCACCATACTACTACAAGTCTCCACCACCACCATCACCAAAGCCGTACGTGTACAAGTCTCCGCCGCCACCATCGCCGAAGCCTTACTACTACCAATCTCCTCCACCACCGGCTCCGTACTATCCACACCCACACCCACACCACCAGCCATTGATCGTCAAGGTCGTCGGAAAGGTCTACTGCTACAGATGCTACGACTGGGGATATCCAATCAAGTCTCACGACAAGAAACATCTCGAAGGCGCTGTTGTTGAGATCACATGCTGGGCAGGCAAAAAGGCGATCATGGCTTACGGTAAAACCAAGAACAACGGTAAATTCAGCGTCGCAGTCGAAGATTTTGACTACGGTAAATATGGTGCCAAGGCTTGTACCGCGAAGCTCCACATGGCACCCAAGGGTTCACTTTGCAGCATTCCAACTCCTCTCAACTGGGGCGACAAGGGAGCCAAGCTGAAGGTCAAGTCCAAGAACAATTGGGAGGTTGTGCTCAAGGCCAAGCCCTTTGCTTTCGCTCCAAAGACCCCTTACAAGGAGTGTGCTAAGCCCGCTCCACACCATCCTTCTCCTTACGTCTACAAGTCACCGCCTCCACCAACCCCGACTTACGTCTACAAATCTCCTCCTCCACCGTCGCCAAAGTACATTTACAAGTCGCCGCCACCACCGGCTTACTACTACAAGTCGCCACCACCACCATCACCAAAGCCGTATGTGTACAAGTCTCCACCGCCACCATCTCCCAAGCCGTACGTGTACAAGTCTCCTCCGCCACCATCTCCTAAGCCTTACGTGTACAAGTCTCCACCGCCACCATCTCCCAAGCCGTACGTCTACAAGTCTCCACCGCCACCATCTCCCAAGCCGTACGTGTACAAGTCTCCACCACCACCATCACCGAAGCCGTACGTGTACAAGTCTCCACCACCACCATCTCCGAAGCCGTACGTGTACAAGTCTCCACCACCACCATCACCCAAGCCGTACGTGTACAAGTCTCCACCGCCACTGCCACCAAAGTACTACTACAAGTCACCACCACCACCCACATACATCTACAAGTCACCACCACCACCATCACCGAAGCCATACATCTACAAGTCTCCACCACCACCACCACCAAAGTACTACTACAAGTCTCCACCCCCACCAAAGTACTACTACAAGTCTCCACCCCCACCAACTTACGTATACAAGTCACCACCACCACCCACATACCTCTACAAGTCACCACCACCACCATCACCTACACCTTACGTGTACAAGTCTCCACCACCACCAAAGTACTACTACAAGTCACCACCGCCACCAACTTATATCTACAAGTCACCTCCACCGCCAGCATATATCTACAAGTCACCACCACCACCACATTCTCACCCTCACCCACCCTACATTTACAAGTCTCCACCACCACCTTCACCATCTCCTCCTCCTCCATACTACTACAAATCTCCACCACCACCCTCACCTTCTCCCCCTCCTCCATACTACTACAAATCCCCACCACCACCATCCCCATCACCACCACCACCATACATCTACAAGTCTCCTCCACCTCCATCACCTTCTCCTCCACCTCCATACTACTACAAATCACCACCACCACCATCACCCTCTCCCCCACATCCATACTACTACAAATCTCCCCCTCCACCATCACCTTCTCCTCCTCCACCTTATATCTACAAGTCTCCCCCACCACCGTCACCCTCTCCTCCCCCTCCATACTACTACAAATCTCCCCCTCCACCCTCACCATCTCCTCCTCCACCATACGTCTACAAGTCCCCTCCTCCTCCCTCACCCTCACCTCCACCACCATATTTATACAAATCTCCACCACCACCCTCATCATCTCCCCCTCCACCATACCACTACACCTCCCCGCCGCCACCTTCCCCATCTCCTCCACCACCATACCACTACACCTCACCACCACCACCCTCTCCATCTCCTCCCCCACCATACCAATACAAGTCTCCACCTCCCCCACACAAGGAACCAAAGCCAACTCCTCCCTACCATTACACATCTCCACCACCACCATCGCCATCTCCTCGACCACCATACCACTACACCTCACCACCACCACCCTCTCCATCTCCTCCCCCACCATACCAATACAAGTCTCCACCTCCCCCACACAAGGAACCAAAGCCAACTCCTCCCTACCATTACACATCTCCACCACCACCATTGCCATCTCCTCCTCCACCGTACCACTACACCTCCCCACCTCCACCTTCCCCATCTCCTCCCCCACCATACGCTTACAAGTCTCCACCACCTCCTTCACCTTCTCCTCCTCCTCCCTACGTCTACAAGTCACCTCCACCTCCGGTGAAATCTCCCCCACCACCGGTGTACATTTACGCCTCTCCCCCACCACCCACTCACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1072

Amino Acids

118.03

Weight (kDa)

9.69

Isoelectric Point (pI)

136.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 326 - 420 1.4e-15 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1172, 1204
AccBSI CCGCTC 1 cut(s) 1364
AccII CGCG 1 cut(s) 1190
AcoI YGGCCR 2 cut(s) 44, 54
AcsI RAATTY 1 cut(s) 1130
AcuI CTGAAG 1 cut(s) 1289
AfiI CCNNNNNNNGG 7 cut(s) 30, 31, 32, 1345, 2812, 2962, 3175
AgeI ACCGGT 1 cut(s) 3175
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 4 cut(s) 113, 162, 1195, 1267
AluI AGCT 4 cut(s) 113, 162, 1195, 1267
Alw21I GWGCWC 1 cut(s) 1305
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 3 cut(s) 44, 54, 1308
ApeKI GCWGC 2 cut(s) 68, 1224
ApoI RAATTY 1 cut(s) 1130
AsiGI ACCGGT 1 cut(s) 3175
AspLEI GCGC 1 cut(s) 1058
AvaI CYCGRG 1 cut(s) 30
BanI GGYRCC 2 cut(s) 1172, 1204
BarI GAAGNNNNNNTAC 2 cut(s) 884, 916
Bbv12I GWGCWC 1 cut(s) 1305
BbvI GCAGC 2 cut(s) 80, 1236
BclI TGATCA 1 cut(s) 115
BfmI CTRYAG 2 cut(s) 157, 997
BfoI RGCGCY 1 cut(s) 1059
BisI GCNGC 6 cut(s) 47, 69, 878, 1225, 1472, 2705
BlpI GCTNAGC 1 cut(s) 1356
BlsI GCNGC 6 cut(s) 48, 70, 879, 1226, 1473, 2706
BmcAI AGTACT 4 cut(s) 1835, 1940, 1970, 2099
BmeT110I CYCGRG 1 cut(s) 30
BmiI GGNNCC 6 cut(s) 927, 1174, 1206, 1261, 2817, 2967
BmrI ACTGGG 2 cut(s) 1021, 1255
BmsI GCATC 1 cut(s) 992
BmuI ACTGGG 2 cut(s) 1021, 1255
BoxI GACNNNNGTC 1 cut(s) 1421
BpmI CTGGAG 3 cut(s) 540, 588, 636
Bpu10I CCTNAGC 1 cut(s) 1596
Bpu1102I GCTNAGC 1 cut(s) 1356
BpuEI CTTGAG 1 cut(s) 1289
BsaJI CCNNGG 3 cut(s) 57, 1176, 1209
BsaWI WCCGGW 2 cut(s) 3154, 3175
BsaXI ACNNNNNCTCC 5 cut(s) 28, 2681, 2711, 3029, 3059
Bsc4I CCNNNNNNNGG 7 cut(s) 30, 31, 32, 1345, 2812, 2962, 3175
Bse118I RCCGGY 3 cut(s) 922, 1480, 3175
Bse1I ACTGG 2 cut(s) 1016, 1250
Bse3DI GCAATG 2 cut(s) 100, 3011
BseDI CCNNGG 3 cut(s) 57, 1176, 1209
BseGI GGATG 5 cut(s) 118, 286, 1372, 2327, 2440
BseLI CCNNNNNNNGG 7 cut(s) 30, 31, 32, 1345, 2812, 2962, 3175
BseMI GCAATG 2 cut(s) 100, 3011
BseNI ACTGG 2 cut(s) 1016, 1250
BseXI GCAGC 2 cut(s) 80, 1236
BseYI CCCAGC 1 cut(s) 1077
Bsh1236I CGCG 1 cut(s) 1190
BshFI GGCC 3 cut(s) 46, 56, 1310
BshNI GGYRCC 2 cut(s) 1172, 1204
BshTI ACCGGT 1 cut(s) 3175
BsiHKAI GWGCWC 1 cut(s) 1305
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 4 cut(s) 923, 1481, 3155, 3176
BsiWI CGTACG 9 cut(s) 198, 435, 858, 1563, 1641, 1680, 1719, 1758, 1797
BslFI GGGAC 2 cut(s) 721, 2587
BslI CCNNNNNNNGG 7 cut(s) 30, 31, 32, 1345, 2812, 2962, 3175
BsmFI GGGAC 2 cut(s) 721, 2587
BsmI GAATGC 1 cut(s) 1227
BsnI GGCC 3 cut(s) 46, 56, 1310
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 1305
Bsp143I GATC 4 cut(s) 115, 966, 1068, 1095
Bsp1720I GCTNAGC 1 cut(s) 1356
BspANI GGCC 3 cut(s) 46, 56, 1310
BspFNI CGCG 1 cut(s) 1190
BspLI GGNNCC 6 cut(s) 927, 1174, 1206, 1261, 2817, 2967
BspT107I GGYRCC 2 cut(s) 1172, 1204
BsrBI CCGCTC 1 cut(s) 1364
BsrDI GCAATG 2 cut(s) 100, 3011
BsrFI RCCGGY 3 cut(s) 922, 1480, 3175
BsrI ACTGG 2 cut(s) 1016, 1250
BssAI RCCGGY 3 cut(s) 922, 1480, 3175
BssECI CCNNGG 3 cut(s) 57, 1176, 1209
BssMI GATC 4 cut(s) 115, 966, 1068, 1095
BssNAI GTATAC 1 cut(s) 2005
BssT1I CCWWGG 2 cut(s) 1176, 1209
Bst1107I GTATAC 1 cut(s) 2005
Bst4CI ACNGT 7 cut(s) 198, 1109, 1127, 1163, 1446, 2520, 3033
Bst6I CTCTTC 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 164, 1084, 1362, 2154
BstDEI CTNAG 2 cut(s) 1356, 1596
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 5 cut(s) 118, 286, 1372, 2327, 2440
BstFNI CGCG 1 cut(s) 1190
BstH2I RGCGCY 1 cut(s) 1059
BstHHI GCGC 1 cut(s) 1058
BstKTI GATC 4 cut(s) 118, 969, 1071, 1098
BstMBI GATC 4 cut(s) 115, 966, 1068, 1095
BstMWI GCNNNNNNNGC 7 cut(s) 68, 886, 1002, 1083, 1100, 1187, 1361
BstNSI RCATGY 1 cut(s) 1077
BstPAI GACNNNNGTC 1 cut(s) 1421
BstSFI CTRYAG 2 cut(s) 157, 997
BstSNI TACGTA 1 cut(s) 2002
BstUI CGCG 1 cut(s) 1190
BstV1I GCAGC 2 cut(s) 80, 1236
BstZ17I GTATAC 1 cut(s) 2005
BsuRI GGCC 3 cut(s) 46, 56, 1310
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 6 cut(s) 210, 258, 306, 354, 870, 2847
BtsCI GGATG 5 cut(s) 118, 286, 1372, 2327, 2440
BtsI GCAGTG 1 cut(s) 1820
BtsIMutI CAGTG 1 cut(s) 1820
Cac8I GCNNGC 4 cut(s) 164, 1084, 1362, 2154
CfoI GCGC 1 cut(s) 1058
Cfr10I RCCGGY 3 cut(s) 922, 1480, 3175
CseI GACGC 1 cut(s) 1126
CspAI ACCGGT 1 cut(s) 3175
CspCI CAANNNNNGTGG 2 cut(s) 2994, 3029
CviAII CATG 3 cut(s) 1074, 1099, 1201
DdeI CTNAG 2 cut(s) 1356, 1596
DpnI GATC 4 cut(s) 117, 968, 1070, 1097
DpnII GATC 4 cut(s) 115, 966, 1068, 1095
EaeI YGGCCR 2 cut(s) 44, 54
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 2 cut(s) 864, 1572
Eco105I TACGTA 1 cut(s) 2002
Eco130I CCWWGG 2 cut(s) 1176, 1209
Eco32I GATATC 1 cut(s) 1019
Eco57I CTGAAG 1 cut(s) 1289
Eco88I CYCGRG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 1019
EcoT14I CCWWGG 2 cut(s) 1176, 1209
ErhI CCWWGG 2 cut(s) 1176, 1209
FaeI CATG 3 cut(s) 1077, 1102, 1204
FaqI GGGAC 2 cut(s) 721, 2587
FatI CATG 3 cut(s) 1073, 1098, 1200
FauI CCCGC 2 cut(s) 1369, 2709
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 6 cut(s) 47, 69, 878, 1225, 1472, 2705
FokI GGATG 5 cut(s) 105, 273, 1359, 2314, 2427
Fsp4HI GCNGC 6 cut(s) 47, 69, 878, 1225, 1472, 2705
GlaI GCGC 1 cut(s) 1057
GluI GCNGC 6 cut(s) 47, 69, 878, 1225, 1472, 2705
GsaI CCCAGC 1 cut(s) 1081
GsuI CTGGAG 3 cut(s) 540, 588, 636
HaeII RGCGCY 1 cut(s) 1059
HaeIII GGCC 3 cut(s) 46, 56, 1310
HapII CCGG 4 cut(s) 923, 1481, 3155, 3176
HgaI GACGC 1 cut(s) 1126
HhaI GCGC 1 cut(s) 1058
Hin1II CATG 3 cut(s) 1077, 1102, 1204
Hin6I GCGC 1 cut(s) 1056
HinP1I GCGC 1 cut(s) 1056
HpaII CCGG 4 cut(s) 923, 1481, 3155, 3176
Hpy188I TCNGA 2 cut(s) 983, 1752
Hpy188III TCNNGA 2 cut(s) 1034, 1049
Hpy99I CGWCG 3 cut(s) 983, 1142, 1450
HpyCH4III ACNGT 7 cut(s) 198, 1109, 1127, 1163, 1446, 2520, 3033
HpyCH4V TGCA 2 cut(s) 68, 1224
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 886, 1002, 1083, 1100, 1187, 1361
HpyF3I CTNAG 2 cut(s) 1356, 1596
Hsp92II CATG 3 cut(s) 1077, 1102, 1204
HspAI GCGC 1 cut(s) 1056
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 4 cut(s) 115, 966, 1068, 1095
LmnI GCTCC 5 cut(s) 931, 1200, 1259, 1333, 1369
Lsp1109I GCAGC 2 cut(s) 80, 1236
LweI GCATC 1 cut(s) 992
MalI GATC 4 cut(s) 117, 968, 1070, 1097
MbiI CCGCTC 1 cut(s) 1364
MboI GATC 4 cut(s) 115, 966, 1068, 1095
MboII GAAGA 3 cut(s) 126, 654, 1160
MfeI CAATTG 1 cut(s) 1288
MhlI GDGCHC 1 cut(s) 1305
MluCI AATT 3 cut(s) 425, 1130, 1288
MmeI TCCRAC 2 cut(s) 961, 1256
MspI CCGG 4 cut(s) 923, 1481, 3155, 3176
MunI CAATTG 1 cut(s) 1288
Mva1269I GAATGC 1 cut(s) 1227
MvnI CGCG 1 cut(s) 1190
MwoI GCNNNNNNNGC 7 cut(s) 68, 886, 1002, 1083, 1100, 1187, 1361
NdeII GATC 4 cut(s) 115, 966, 1068, 1095
NlaIII CATG 3 cut(s) 1077, 1102, 1204
NlaIV GGNNCC 6 cut(s) 927, 1174, 1206, 1261, 2817, 2967
NspI RCATGY 1 cut(s) 1077
PcsI WCGNNNNNNNCGW 1 cut(s) 975
PctI GAATGC 1 cut(s) 1227
Pfl23II CGTACG 9 cut(s) 198, 435, 858, 1563, 1641, 1680, 1719, 1758, 1797
PinAI ACCGGT 1 cut(s) 3175
PkrI GCNGC 6 cut(s) 48, 70, 879, 1226, 1473, 2706
PshAI GACNNNNGTC 1 cut(s) 1421
PspFI CCCAGC 1 cut(s) 1077
PspLI CGTACG 9 cut(s) 198, 435, 858, 1563, 1641, 1680, 1719, 1758, 1797
PspN4I GGNNCC 6 cut(s) 927, 1174, 1206, 1261, 2817, 2967
SatI GCNGC 6 cut(s) 47, 69, 878, 1225, 1472, 2705
Sau3AI GATC 4 cut(s) 115, 966, 1068, 1095
ScaI AGTACT 4 cut(s) 1835, 1940, 1970, 2099
SduI GDGCHC 1 cut(s) 1305
SfaNI GCATC 1 cut(s) 992
SfcI CTRYAG 2 cut(s) 157, 997
SgrAI CRCCGGYG 1 cut(s) 3175
SmlI CTYRAG 1 cut(s) 1304
SmoI CTYRAG 1 cut(s) 1304
SnaBI TACGTA 1 cut(s) 2002
Sse9I AATT 3 cut(s) 425, 1130, 1288
StyI CCWWGG 2 cut(s) 1176, 1209
TaaI ACNGT 7 cut(s) 198, 1109, 1127, 1163, 1446, 2520, 3033
TaqI TCGA 5 cut(s) 11, 89, 1050, 1146, 2875
TasI AATT 3 cut(s) 425, 1130, 1288
TauI GCSGC 4 cut(s) 49, 880, 1474, 2707
TscAI CASTG 1 cut(s) 1827
TseI GCWGC 2 cut(s) 68, 1224
TspGWI ACGGA 2 cut(s) 423, 918
TspRI CASTG 1 cut(s) 1827
XapI RAATTY 1 cut(s) 1130
XceI RCATGY 1 cut(s) 1077
ZrmI AGTACT 4 cut(s) 1835, 1940, 1970, 2099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.