Rh6BG257400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001240
Physical Location & Seq
Forward (+)
47072921 .. 47073193
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG257400.1

Sequence Viewer

Length: 273 bp
ATGTCTCTTCCTTGTGGAACCCTAGCAGTGCCGACTAGAGGTGCAGAGCATGAAGACGGCGGTCCTTGCCACCCTCGTATAGCGTGCCAGACTCGCTCTGGCGTCAGCTTTCTCTCTATGGTCCTTTTAGGACTGGTCTTGGCTCTGATTCTGATTGGACATACTGCTGATCCGATCATGAGGGAGAAGGATTCTGCTGATGAGTGCTTGGTTTTTTGGGTTGACGGTGGTGGGACTTTGGTGTGGCATCCCGGAGATCTGGCTCGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.59

Weight (kDa)

5.67

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 38
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 62, 121
AsuC2I CCSGG 1 cut(s) 252
AvaII GGWCC 2 cut(s) 62, 121
BbsI GAAGAC 1 cut(s) 60
BceAI ACGGC 1 cut(s) 73
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 23, 36
BglII AGATCT 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 2 cut(s) 62, 121
BmgT120I GGNCC 2 cut(s) 62, 121
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 256
BoxI GACNNNNGTC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 247
Bsp143I GATC 3 cut(s) 169, 174, 256
BspACI CCGC 1 cut(s) 60
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 138
BssMI GATC 3 cut(s) 169, 174, 256
BssNI GRCGYC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 85
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 3 cut(s) 172, 177, 259
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 169, 174, 256
BstMWI GCNNNNNNNGC 2 cut(s) 66, 93
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 250
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 85
CciI TCATGA 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 62, 121
CseI GACGC 1 cut(s) 91
CviAII CATG 2 cut(s) 50, 178
CviJI RGCY 3 cut(s) 108, 143, 263
CviKI_1 RGCY 3 cut(s) 108, 143, 263
DpnI GATC 3 cut(s) 171, 176, 258
DpnII GATC 3 cut(s) 169, 174, 256
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 62, 121
FaeI CATG 2 cut(s) 53, 181
FaiI YATR 5 cut(s) 51, 80, 119, 162, 179
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 49, 177
FokI GGATG 1 cut(s) 234
FspBI CTAG 2 cut(s) 23, 36
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 2 cut(s) 53, 181
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 3 cut(s) 91, 148, 191
HpaII CCGG 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 147, 153, 174
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 93
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 2 cut(s) 53, 181
Kzo9I GATC 3 cut(s) 169, 174, 256
LpnPI CCDG 5 cut(s) 84, 101, 119, 245, 265
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 23, 36
MalI GATC 3 cut(s) 171, 176, 258
MboI GATC 3 cut(s) 169, 174, 256
MboII GAAGA 1 cut(s) 65
MflI RGATCY 1 cut(s) 256
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 3 cut(s) 32, 84, 174
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 66, 93
NciI CCSGG 1 cut(s) 252
NdeII GATC 3 cut(s) 169, 174, 256
NlaIII CATG 2 cut(s) 53, 181
NlaIV GGNNCC 1 cut(s) 19
PagI TCATGA 1 cut(s) 177
PfeI GAWTC 2 cut(s) 148, 191
PfoI TCCNGGA 1 cut(s) 250
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PshAI GACNNNNGTC 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 62, 121
PsuI RGATCY 1 cut(s) 256
Sau3AI GATC 3 cut(s) 169, 174, 256
Sau96I GGNCC 2 cut(s) 62, 121
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 252
SetI ASST 2 cut(s) 43, 110
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 2 cut(s) 62, 121
SsiI CCGC 1 cut(s) 60
SspMI CTAG 2 cut(s) 23, 36
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 265
TfiI GAWTC 2 cut(s) 148, 191
TscAI CASTG 1 cut(s) 33
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 1 cut(s) 33
VpaK11BI GGWCC 2 cut(s) 62, 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 2 cut(s) 23, 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.