Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Forward (+)

53071430 .. 53072103

Gene Structure 674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCGTAGGGAAAATGACAATGAAGATGCCGAGGCCTTCATTCAGAACATTGGACCTCTAGCAGTAAAAAGATACAAATTTTCAGATGTAAGGAAAATGACCAACTCATTTAAAGATAAACTGGGTCAAGGTGGTTATGGTGATGTGTACGAAGGTAAGCTATTGAATGGTTGTCGTGTGGCTGTGAAGGTTCTTAAAGAATCCAGAGGAAATGGAGAGGACTTTGTTAATGTGGCTGCAAGCATTAGGAGAACTTCCCATGTTAATGCTGTCACTCTTGTGGGGTATTGCTTTGAAGTAAGAAAAAAGCGCTCATGTATGAGTTCATACCCAATGGATCACTTGAGAAGTTCATATACAGAGACAGTAATCCTTTGGAAACTACTCCATACTTGGAATTGGAAAGACTCTTTCAAATTGCCACCGGATAACTCGAGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

147

Amino Acids

16.86

Weight (kDa)

9.51

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	37 - 101	5.9e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	1 cut(s)	149
AfeI	AGCGCT	1 cut(s)	311
AgsI	TTSAA	3 cut(s)	166, 296, 415
AleI	CACNNNNGTG	1 cut(s)	278
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	433
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	340, 372
BbvI	GCAGC	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	313
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	425
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	2 cut(s)	260, 315
CviJI	RGCY	5 cut(s)	35, 160, 182, 236, 440
CviKI_1	RGCY	5 cut(s)	35, 160, 182, 236, 440
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DraI	TTTAAA	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	53
Eco47III	AGCGCT	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	433
FaeI	CATG	2 cut(s)	263, 318
FaiI	YATR	8 cut(s)	138, 261, 316, 320, 328, 355, 357, 390
FatI	CATG	2 cut(s)	259, 314
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	425
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	2 cut(s)	263, 318
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	200, 407
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	45, 85
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	46, 146, 181
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	263, 318
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	3 cut(s)	107, 217, 438
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	1 cut(s)	35
MluCI	AATT	3 cut(s)	77, 397, 416
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	5 cut(s)	25, 66, 200, 211, 429
MseI	TTAA	4 cut(s)	111, 195, 228, 264
MslI	CAYNNNNRTG	2 cut(s)	264, 278
MspI	CCGG	1 cut(s)	425
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	263, 318
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	271
OliI	CACNNNNGTG	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PspPI	GGNCC	1 cut(s)	53
PspXI	VCTCGAGB	1 cut(s)	433
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	2 cut(s)	264, 278
SaqAI	TTAA	4 cut(s)	111, 195, 228, 264
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	401
SetI	ASST	5 cut(s)	58, 133, 157, 162, 192
SfaNI	GCATC	1 cut(s)	16
Sfr274I	CTCGAG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	433
SmiMI	CAYNNNNRTG	2 cut(s)	264, 278
SmlI	CTYRAG	2 cut(s)	343, 433
SmoI	CTYRAG	2 cut(s)	343, 433
Sse9I	AATT	3 cut(s)	77, 397, 416
SseBI	AGGCCT	1 cut(s)	35
SspMI	CTAG	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	434
TasI	AATT	3 cut(s)	77, 397, 416
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	4 cut(s)	111, 195, 228, 264
Tru9I	TTAA	4 cut(s)	111, 195, 228, 264
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	4 cut(s)	28, 36, 315, 342
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	433
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.