FvH4_4g37100

RNA helicase SDE3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000595
Physical Location & Seq
Reverse (-)
33712395 .. 33715312
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g37100.t3

Sequence Viewer

Length: 1857 bp
ATGTCGAGCTTTTTTGATCTTCTGAGATGTCTTTTATGTTGTGCCGATGAGCCTGATTGTCGCCGAACTTCTTCCGATTATTCAAGAAACCGTTCTGATGAAGGAACCCTTTACTATGATGACTGTGTTCCCAGTCCCAGGCTCAGCTATTTGCCTATTTCAACTTCAATTACTTCATTTCAACCTCACTACTATTCTCATGATCTTTTTGGTACTTCTTCACTTCGATCACCGGATTCACCTCCAACCTCCTCTTATAAACCACCACCTCTATCAACACCGGCATCTCAATATTATTCATCTATTAATAAACCGCCCGTCACTTCTTTTATCAGTTCATCTTCTTCATCAAAACCAACACTATCGTCTACTATTAAACCATCTTCATCATCCCCTAAGAAGCCACCTCAGCCAACATCATCTAATTCTAAGCCAAATCCATACTCCCAAATACCTCCACCACAATCTTCGTCTCTATCTTCTCCAAAAGTTCCTCCTGTTTATAAGTCAATTTTATCCCCTGCCTCCTCCTCCTCCTCAAATGTCATAAATCAACACCGACAAGATGGGAAGAAAACAGCATATGTGTGTGTTGAAGAGGATTCATTACCTGTATTCATGATTCCTGAGGATATCAAAGCCTTGATCAAGAACGACACTGTGCCTAAAATTCTGAATCGCCCTTTGTCTCCCACAACATACAAGGATTACTTTGCCGCTCTCTTATATTCTGAAGATTTCTACTTGGAGAAATGGAGTGATTTCCTTTTGAAGGGTGTGACATTGGAGTTGGAGAAAAGCCAAATTTATAAAAATGGCAAAAAGGAAGGTAAAACCTTTGTAGCATTTGAGCTTGATTCTGTTCCTGAGGAACGTCCATTCCTCTTATCAAGGGACTTGGTCCTTGCACGACCAGTGGGTAACAGTACTGCTGAGCCCTTTCAGGGCTTCATCAATAAAGTAGTTAAGAGCAAACGCGTTCTGGTTGAGTTTGAAGATGCCTTCTATTCTAAACATCATTCCAACAAAAAATATGATGTCAGCTTCTCATTCAATAGAGTTTGTTTGAAAAGAGCCCACCACGCAATTGAAACTGCATCAGACGCCTTGTTTCAGAACTTCCTCTTCCCTGATTGTGACTCACGAGTGAGCATTCCTACTACATCAGCTCTGCTTTCTACCACATATCATAAGCTCCCTCGAGATCGACGTTCTGCAGTTGAACATATATTAAGGATTCAGGGCTCACCACCTTATGTAGTAACTGGTCCGAACCCTTCAAGAATTGGAGAGGTTGTTAGTGAAGCAGTATACCAATTATGTCAAAAGTCACCAGAGTGTCGGATTCTTATCTGCGCGCCCACTAACAGCAGCTGTGATGTACTGATGACAAGCTTGGCAAAGGTGATTCCAGAGTCGACTATGTTTCGTGCCAATGCTGCATTCCGTGAGAAAGATGAGGTACCTGAGGATATCCTCCGGTCATCCCTTCACAACGAGTTTTGTTTTTATTGTCCTCCAATAGAGAAACTCCGGAAATACAGGGTGATTTTCTCGACTTTCATTAGCAGCTTTCGACTACATGATAAAGGCATAGCGGTTGGACATTTCAGCCATATTTTCCTGGTGGATGCTGCATCTGCTATTGAGCCGGAAACATTGGTAACCCTAACTAACTTTGCTGACAAGACTACTAGTGTTATAGTTACCGGTAGCCCTGGACATAGCCCGCGCTGGGTTCGTGCTGACATTGCCAGGAGAAAAGGACTCAAGATATCATACTTTGAAAGACTCTGTAAGCGCAGCCCCTATAAAAGCCTCAGTCCAATGTTCATCACACAATTAGACGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

619

Amino Acids

69.23

Weight (kDa)

8.92

Isoelectric Point (pI)

64.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOV-10_beta-barrel PF21634 274 - 349 2.7e-10 Helicase MOV-10, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 258, 504, 810
Acc65I GGTACC 1 cut(s) 1462
AccB1I GGYRCC 1 cut(s) 1462
AccBSI CCGCTC 1 cut(s) 719
AccI GTMKAC 3 cut(s) 368, 1311, 1418
AccII CGCG 3 cut(s) 978, 1358, 1732
AccIII TCCGGA 1 cut(s) 1533
AciI CCGC 4 cut(s) 314, 717, 1598, 1730
AcsI RAATTY 2 cut(s) 669, 804
AcuI CTGAAG 1 cut(s) 753
AcyI GRCGYC 1 cut(s) 1104
AfaI GTAC 4 cut(s) 214, 928, 1383, 1464
AfiI CCNNNNNNNGG 4 cut(s) 138, 772, 944, 1735
AflIII ACRYGT 1 cut(s) 976
AgeI ACCGGT 1 cut(s) 1709
AhlI ACTAGT 1 cut(s) 1694
AjnI CCWGG 4 cut(s) 137, 1623, 1717, 1754
AjuI GAANNNNNNNTTGG 2 cut(s) 1427, 1459
AleI CACNNNNGTG 1 cut(s) 1336
AloI GAACNNNNNNTCC 2 cut(s) 864, 896
AluBI AGCT 9 cut(s) 9, 147, 853, 1044, 1169, 1195, 1374, 1395, 1572
AluI AGCT 9 cut(s) 9, 147, 853, 1044, 1169, 1195, 1374, 1395, 1572
Alw26I GTCTC 2 cut(s) 477, 693
AlwNI CAGNNNCTG 1 cut(s) 1374
Ama87I CYCGRG 1 cut(s) 1200
Aor13HI TCCGGA 1 cut(s) 1533
ApeKI GCWGC 5 cut(s) 1371, 1439, 1569, 1634, 1803
ApoI RAATTY 2 cut(s) 669, 804
AseI ATTAAT 1 cut(s) 306
AsiGI ACCGGT 1 cut(s) 1709
Asp700I GAANNNNTTC 2 cut(s) 70, 91
Asp718I GGTACC 1 cut(s) 1462
AspLEI GCGC 4 cut(s) 1358, 1360, 1734, 1803
AspS9I GGNCC 2 cut(s) 901, 1268
AsuHPI GGTGA 6 cut(s) 222, 231, 1239, 1323, 1417, 1558
AvaI CYCGRG 1 cut(s) 1200
AvaII GGWCC 2 cut(s) 901, 1268
AxyI CCTNAGG 3 cut(s) 627, 867, 1467
BanI GGYRCC 1 cut(s) 1462
BanII GRGCYC 3 cut(s) 939, 1078, 1247
BauI CACGAG 1 cut(s) 1143
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 5 cut(s) 1383, 1426, 1581, 1621, 1815
BccI CCATC 2 cut(s) 388, 560
BciT130I CCWGG 4 cut(s) 139, 1625, 1719, 1756
BclI TGATCA 1 cut(s) 645
BcoDI GTCTC 2 cut(s) 477, 693
BcuI ACTAGT 1 cut(s) 1694
BfaI CTAG 1 cut(s) 1695
BfmI CTRYAG 1 cut(s) 1215
BisI GCNGC 6 cut(s) 717, 1372, 1440, 1570, 1635, 1804
BlpI GCTNAGC 2 cut(s) 143, 933
BlsI GCNGC 6 cut(s) 718, 1373, 1441, 1571, 1636, 1805
BmcAI AGTACT 1 cut(s) 928
Bme1390I CCNGG 4 cut(s) 139, 1625, 1719, 1756
Bme18I GGWCC 2 cut(s) 901, 1268
BmeT110I CYCGRG 1 cut(s) 1200
BmgT120I GGNCC 2 cut(s) 901, 1268
BmiI GGNNCC 2 cut(s) 106, 1464
BmrFI CCNGG 4 cut(s) 139, 1625, 1719, 1756
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 5 cut(s) 293, 988, 1106, 1621, 1646
BmuI ACTGGG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 408
Bpu1102I GCTNAGC 2 cut(s) 143, 933
BpuEI CTTGAG 1 cut(s) 1754
BsaBI GATNNNNATC 1 cut(s) 1349
BsaHI GRCGYC 1 cut(s) 1104
BsaJI CCNNGG 2 cut(s) 137, 1717
BsaWI WCCGGW 4 cut(s) 232, 1479, 1533, 1709
BsaXI ACNNNNNCTCC 2 cut(s) 1281, 1311
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 772, 944, 1735
Bse118I RCCGGY 2 cut(s) 280, 1709
Bse1I ACTGG 3 cut(s) 132, 914, 1270
Bse21I CCTNAGG 3 cut(s) 627, 867, 1467
Bse3DI GCAATG 1 cut(s) 1749
Bse8I GATNNNNATC 1 cut(s) 1349
BseAI TCCGGA 1 cut(s) 1533
BseBI CCWGG 4 cut(s) 139, 1625, 1719, 1756
BseDI CCNNGG 2 cut(s) 137, 1717
BseGI GGATG 3 cut(s) 389, 1484, 1636
BseJI GATNNNNATC 1 cut(s) 1349
BseLI CCNNNNNNNGG 4 cut(s) 138, 772, 944, 1735
BseMI GCAATG 1 cut(s) 1749
BseMII CTCAG 8 cut(s) 14, 157, 422, 618, 858, 924, 1458, 1834
BseNI ACTGG 3 cut(s) 132, 914, 1270
BsePI GCGCGC 1 cut(s) 1356
BseRI GAGGAG 5 cut(s) 241, 517, 520, 523, 526
BseXI GCAGC 5 cut(s) 1383, 1426, 1581, 1621, 1815
BseYI CCCAGC 1 cut(s) 1734
Bsh1236I CGCG 3 cut(s) 978, 1358, 1732
BshNI GGYRCC 1 cut(s) 1462
BshTI ACCGGT 1 cut(s) 1709
BsiHKCI CYCGRG 1 cut(s) 1200
BsiSI CCGG 6 cut(s) 233, 281, 1480, 1534, 1652, 1710
BslFI GGGAC 2 cut(s) 120, 908
BslI CCNNNNNNNGG 4 cut(s) 138, 772, 944, 1735
BsmAI GTCTC 2 cut(s) 477, 693
BsmBI CGTCTC 1 cut(s) 477
BsmFI GGGAC 2 cut(s) 120, 908
BsmI GAATGC 2 cut(s) 1152, 1442
BsoBI CYCGRG 1 cut(s) 1200
Bsp1286I GDGCHC 3 cut(s) 939, 1078, 1247
Bsp13I TCCGGA 1 cut(s) 1533
Bsp143I GATC 5 cut(s) 16, 202, 227, 645, 1204
Bsp1720I GCTNAGC 2 cut(s) 143, 933
BspACI CCGC 4 cut(s) 314, 717, 1598, 1730
BspCNI CTCAG 8 cut(s) 15, 156, 421, 619, 859, 925, 1459, 1833
BspEI TCCGGA 1 cut(s) 1533
BspFNI CGCG 3 cut(s) 978, 1358, 1732
BspHI TCATGA 2 cut(s) 199, 618
BspLI GGNNCC 2 cut(s) 106, 1464
BspMAI CTGCAG 1 cut(s) 1219
BspT107I GGYRCC 1 cut(s) 1462
BsrBI CCGCTC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 1749
BsrFI RCCGGY 2 cut(s) 280, 1709
BsrI ACTGG 3 cut(s) 132, 914, 1270
BssAI RCCGGY 2 cut(s) 280, 1709
BssECI CCNNGG 2 cut(s) 137, 1717
BssHII GCGCGC 1 cut(s) 1356
BssMI GATC 5 cut(s) 16, 202, 227, 645, 1204
BssNAI GTATAC 1 cut(s) 1312
BssNI GRCGYC 1 cut(s) 1104
BssSI CACGAG 1 cut(s) 1143
Bst1107I GTATAC 1 cut(s) 1312
Bst2BI CACGAG 1 cut(s) 1143
Bst2UI CCWGG 4 cut(s) 139, 1625, 1719, 1756
Bst4CI ACNGT 4 cut(s) 92, 125, 661, 926
Bst6I CTCTTC 2 cut(s) 591, 1130
BstACI GRCGYC 1 cut(s) 1104
BstC8I GCNNGC 2 cut(s) 1358, 1730
BstEII GGTNACC 1 cut(s) 1663
BstENI CCTNNNNNAGG 1 cut(s) 770
BstF5I GGATG 3 cut(s) 389, 1484, 1636
BstFNI CGCG 3 cut(s) 978, 1358, 1732
BstHHI GCGC 4 cut(s) 1358, 1360, 1734, 1803
BstKTI GATC 5 cut(s) 19, 205, 230, 648, 1207
BstMAI GTCTC 2 cut(s) 477, 693
BstMBI GATC 5 cut(s) 16, 202, 227, 645, 1204
BstMWI GCNNNNNNNGC 6 cut(s) 409, 1082, 1103, 1439, 1640, 1751
BstNI CCWGG 4 cut(s) 139, 1625, 1719, 1756
BstPI GGTNACC 1 cut(s) 1663
BstSCI CCNGG 4 cut(s) 137, 1623, 1717, 1754
BstSFI CTRYAG 1 cut(s) 1215
BstUI CGCG 3 cut(s) 978, 1358, 1732
BstV1I GCAGC 5 cut(s) 1383, 1426, 1581, 1621, 1815
BstZ17I GTATAC 1 cut(s) 1312
Bsu36I CCTNAGG 3 cut(s) 627, 867, 1467
BtsCI GGATG 3 cut(s) 389, 1484, 1636
BtsIMutI CAGTG 2 cut(s) 657, 921
Cac8I GCNNGC 2 cut(s) 1358, 1730
CaiI CAGNNNCTG 1 cut(s) 1374
CciI TCATGA 2 cut(s) 199, 618
CfoI GCGC 4 cut(s) 1358, 1360, 1734, 1803
Cfr10I RCCGGY 2 cut(s) 280, 1709
Cfr13I GGNCC 2 cut(s) 901, 1268
CseI GACGC 1 cut(s) 1112
Csp6I GTAC 4 cut(s) 213, 927, 1382, 1463
CspAI ACCGGT 1 cut(s) 1709
CviAII CATG 3 cut(s) 200, 619, 1583
CviQI GTAC 4 cut(s) 213, 927, 1382, 1463
DpnI GATC 5 cut(s) 18, 204, 229, 647, 1206
DpnII GATC 5 cut(s) 16, 202, 227, 645, 1204
Eam1104I CTCTTC 2 cut(s) 591, 1130
EarI CTCTTC 2 cut(s) 591, 1130
Eco24I GRGCYC 3 cut(s) 939, 1078, 1247
Eco32I GATATC 3 cut(s) 634, 1474, 1776
Eco47I GGWCC 2 cut(s) 901, 1268
Eco57I CTGAAG 1 cut(s) 753
Eco81I CCTNAGG 3 cut(s) 627, 867, 1467
Eco88I CYCGRG 1 cut(s) 1200
Eco91I GGTNACC 1 cut(s) 1663
EcoNI CCTNNNNNAGG 1 cut(s) 770
EcoO65I GGTNACC 1 cut(s) 1663
EcoRII CCWGG 4 cut(s) 137, 1623, 1717, 1754
EcoRV GATATC 3 cut(s) 634, 1474, 1776
EcoT38I GRGCYC 3 cut(s) 939, 1078, 1247
Esp3I CGTCTC 1 cut(s) 477
FaeI CATG 3 cut(s) 203, 622, 1586
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 695, 727
FaqI GGGAC 2 cut(s) 120, 908
FatI CATG 3 cut(s) 199, 618, 1582
FauI CCCGC 1 cut(s) 1737
FauNDI CATATG 1 cut(s) 583
FbaI TGATCA 1 cut(s) 645
FblI GTMKAC 3 cut(s) 368, 1311, 1418
Fnu4HI GCNGC 6 cut(s) 717, 1372, 1440, 1570, 1635, 1804
FokI GGATG 3 cut(s) 376, 1471, 1643
FriOI GRGCYC 3 cut(s) 939, 1078, 1247
Fsp4HI GCNGC 6 cut(s) 717, 1372, 1440, 1570, 1635, 1804
FspBI CTAG 1 cut(s) 1695
GlaI GCGC 4 cut(s) 1357, 1359, 1733, 1802
GluI GCNGC 6 cut(s) 717, 1372, 1440, 1570, 1635, 1804
GsaI CCCAGC 1 cut(s) 1738
HapII CCGG 6 cut(s) 233, 281, 1480, 1534, 1652, 1710
HgaI GACGC 1 cut(s) 1112
HhaI GCGC 4 cut(s) 1358, 1360, 1734, 1803
Hin1I GRCGYC 1 cut(s) 1104
Hin1II CATG 3 cut(s) 203, 622, 1586
Hin6I GCGC 4 cut(s) 1356, 1358, 1732, 1801
HinP1I GCGC 4 cut(s) 1356, 1358, 1732, 1801
HincII GTYRAC 1 cut(s) 1419
HindII GTYRAC 1 cut(s) 1419
HindIII AAGCTT 1 cut(s) 1393
HpaII CCGG 6 cut(s) 233, 281, 1480, 1534, 1652, 1710
HphI GGTGA 6 cut(s) 222, 231, 1239, 1323, 1417, 1558
Hpy166II GTNNAC 4 cut(s) 369, 1312, 1419, 1852
Hpy188I TCNGA 9 cut(s) 24, 76, 97, 675, 733, 1102, 1116, 1272, 1344
Hpy8I GTNNAC 4 cut(s) 369, 1312, 1419, 1852
Hpy99I CGWCG 1 cut(s) 1212
HpyAV CCTTC 6 cut(s) 95, 766, 821, 1012, 1287, 1499
HpyCH4III ACNGT 4 cut(s) 92, 125, 661, 926
HpyCH4IV ACGT 3 cut(s) 874, 1210, 1848
HpyCH4V TGCA 5 cut(s) 908, 1097, 1217, 1442, 1637
HpyF10VI GCNNNNNNNGC 6 cut(s) 409, 1082, 1103, 1439, 1640, 1751
HpySE526I ACGT 3 cut(s) 874, 1210, 1848
Hsp92I GRCGYC 1 cut(s) 1104
Hsp92II CATG 3 cut(s) 203, 622, 1586
HspAI GCGC 4 cut(s) 1356, 1358, 1732, 1801
Kpn2I TCCGGA 1 cut(s) 1533
KpnI GGTACC 1 cut(s) 1466
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 5 cut(s) 16, 202, 227, 645, 1204
LmnI GCTCC 1 cut(s) 1200
Lsp1109I GCAGC 5 cut(s) 1383, 1426, 1581, 1621, 1815
LweI GCATC 5 cut(s) 293, 988, 1106, 1621, 1646
MaeI CTAG 1 cut(s) 1695
MaeII ACGT 3 cut(s) 874, 1210, 1848
MaeIII GTNAC 8 cut(s) 319, 778, 920, 1136, 1261, 1329, 1663, 1705
MalI GATC 5 cut(s) 18, 204, 229, 647, 1206
MbiI CCGCTC 1 cut(s) 719
MboI GATC 5 cut(s) 16, 202, 227, 645, 1204
MfeI CAATTG 1 cut(s) 1086
MhlI GDGCHC 3 cut(s) 939, 1078, 1247
MluCI AATT 9 cut(s) 168, 424, 510, 669, 804, 1086, 1284, 1316, 1841
MluI ACGCGT 1 cut(s) 976
MlyI GAGTC 4 cut(s) 1133, 1424, 1761, 1785
MmeI TCCRAC 5 cut(s) 269, 771, 1047, 1322, 1582
MroI TCCGGA 1 cut(s) 1533
MroXI GAANNNNTTC 2 cut(s) 70, 91
MseI TTAA 4 cut(s) 306, 375, 966, 1232
MslI CAYNNNNRTG 2 cut(s) 586, 1336
MspA1I CMGCKG 1 cut(s) 1374
MspI CCGG 6 cut(s) 233, 281, 1480, 1534, 1652, 1710
MspR9I CCNGG 4 cut(s) 139, 1625, 1719, 1756
MunI CAATTG 1 cut(s) 1086
Mva1269I GAATGC 2 cut(s) 1152, 1442
MvaI CCWGG 4 cut(s) 139, 1625, 1719, 1756
MvnI CGCG 3 cut(s) 978, 1358, 1732
MwoI GCNNNNNNNGC 6 cut(s) 409, 1082, 1103, 1439, 1640, 1751
NdeI CATATG 1 cut(s) 583
NdeII GATC 5 cut(s) 16, 202, 227, 645, 1204
NlaIII CATG 3 cut(s) 203, 622, 1586
NlaIV GGNNCC 2 cut(s) 106, 1464
NmuCI GTSAC 4 cut(s) 319, 778, 1136, 1329
OliI CACNNNNGTG 1 cut(s) 1336
PaeR7I CTCGAG 1 cut(s) 1200
PagI TCATGA 2 cut(s) 199, 618
PauI GCGCGC 1 cut(s) 1356
PcsI WCGNNNNNNNCGW 1 cut(s) 1207
PctI GAATGC 2 cut(s) 1152, 1442
PdmI GAANNNNTTC 2 cut(s) 70, 91
PfeI GAWTC 8 cut(s) 236, 602, 622, 676, 857, 1237, 1345, 1408
PflFI GACNNNGTC 1 cut(s) 899
PinAI ACCGGT 1 cut(s) 1709
PkrI GCNGC 6 cut(s) 718, 1373, 1441, 1571, 1636, 1805
PleI GAGTC 4 cut(s) 1133, 1423, 1761, 1785
PpsI GAGTC 4 cut(s) 1133, 1423, 1761, 1785
PshBI ATTAAT 1 cut(s) 306
PsiI TTATAA 3 cut(s) 258, 504, 810
Psp6I CCWGG 4 cut(s) 137, 1623, 1717, 1754
PspEI GGTNACC 1 cut(s) 1663
PspFI CCCAGC 1 cut(s) 1734
PspGI CCWGG 4 cut(s) 137, 1623, 1717, 1754
PspN4I GGNNCC 2 cut(s) 106, 1464
PspPI GGNCC 2 cut(s) 901, 1268
PstI CTGCAG 1 cut(s) 1219
PstNI CAGNNNCTG 1 cut(s) 1374
PsyI GACNNNGTC 1 cut(s) 899
PteI GCGCGC 1 cut(s) 1356
PvuII CAGCTG 1 cut(s) 1374
RsaI GTAC 4 cut(s) 214, 928, 1383, 1464
RsaNI GTAC 4 cut(s) 213, 927, 1382, 1463
RseI CAYNNNNRTG 2 cut(s) 586, 1336
SalI GTCGAC 1 cut(s) 1417
SaqAI TTAA 4 cut(s) 306, 375, 966, 1232
SatI GCNGC 6 cut(s) 717, 1372, 1440, 1570, 1635, 1804
Sau3AI GATC 5 cut(s) 16, 202, 227, 645, 1204
Sau96I GGNCC 2 cut(s) 901, 1268
ScaI AGTACT 1 cut(s) 928
SchI GAGTC 4 cut(s) 1133, 1424, 1761, 1785
ScrFI CCNGG 4 cut(s) 139, 1625, 1719, 1756
SduI GDGCHC 3 cut(s) 939, 1078, 1247
SfaNI GCATC 5 cut(s) 293, 988, 1106, 1621, 1646
SfcI CTRYAG 1 cut(s) 1215
Sfr274I CTCGAG 1 cut(s) 1200
SinI GGWCC 2 cut(s) 901, 1268
SlaI CTCGAG 1 cut(s) 1200
SmiMI CAYNNNNRTG 2 cut(s) 586, 1336
SmlI CTYRAG 2 cut(s) 1200, 1769
SmoI CTYRAG 2 cut(s) 1200, 1769
SpeI ACTAGT 1 cut(s) 1694
Sse9I AATT 9 cut(s) 168, 424, 510, 669, 804, 1086, 1284, 1316, 1841
SsiI CCGC 4 cut(s) 314, 717, 1598, 1730
SspI AATATT 1 cut(s) 293
SspMI CTAG 1 cut(s) 1695
StyD4I CCNGG 4 cut(s) 137, 1623, 1717, 1754
TaaI ACNGT 4 cut(s) 92, 125, 661, 926
TaiI ACGT 3 cut(s) 877, 1213, 1851
TaqI TCGA 7 cut(s) 5, 226, 1201, 1207, 1418, 1556, 1576
TasI AATT 9 cut(s) 168, 424, 510, 669, 804, 1086, 1284, 1316, 1841
TatI WGTACW 2 cut(s) 926, 1381
TauI GCSGC 1 cut(s) 719
TfiI GAWTC 8 cut(s) 236, 602, 622, 676, 857, 1237, 1345, 1408
Tru1I TTAA 4 cut(s) 306, 375, 966, 1232
Tru9I TTAA 4 cut(s) 306, 375, 966, 1232
TscAI CASTG 2 cut(s) 664, 921
TseFI GTSAC 4 cut(s) 319, 778, 1136, 1329
TseI GCWGC 5 cut(s) 1371, 1439, 1569, 1634, 1803
Tsp45I GTSAC 4 cut(s) 319, 778, 1136, 1329
TspGWI ACGGA 1 cut(s) 1436
TspRI CASTG 2 cut(s) 664, 921
Tth111I GACNNNGTC 1 cut(s) 899
VpaK11BI GGWCC 2 cut(s) 901, 1268
VspI ATTAAT 1 cut(s) 306
XagI CCTNNNNNAGG 1 cut(s) 770
XapI RAATTY 2 cut(s) 669, 804
XhoI CTCGAG 1 cut(s) 1200
XmiI GTMKAC 3 cut(s) 368, 1311, 1418
XmnI GAANNNNTTC 2 cut(s) 70, 91
XspI CTAG 1 cut(s) 1695
ZrmI AGTACT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.