RNA helicase SDE3
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1366 |
| AccB1I | GGYRCC | 1 cut(s) | 1366 |
| AccBSI | CCGCTC | 1 cut(s) | 1386 |
| AccI | GTMKAC | 2 cut(s) | 1215, 1322 |
| AccII | CGCG | 1 cut(s) | 1647 |
| AccIII | TCCGGA | 2 cut(s) | 1135, 1437 |
| AciI | CCGC | 2 cut(s) | 125, 1384 |
| AclI | AACGTT | 1 cut(s) | 1075 |
| AcsI | RAATTY | 1 cut(s) | 851 |
| AcuI | CTGAAG | 3 cut(s) | 15, 615, 1170 |
| AfaI | GTAC | 3 cut(s) | 790, 1146, 1368 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 634, 735, 806, 1639 |
| AflII | CTTAAG | 1 cut(s) | 1096 |
| AhlI | ACTAGT | 1 cut(s) | 1598 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1331, 1363 |
| Alw21I | GWGCWC | 1 cut(s) | 940 |
| Alw26I | GTCTC | 3 cut(s) | 84, 420, 555 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1278 |
| Ama87I | CYCGRG | 1 cut(s) | 1370 |
| Aor13HI | TCCGGA | 2 cut(s) | 1135, 1437 |
| AoxI | GGCC | 3 cut(s) | 737, 966, 1709 |
| ApeKI | GCWGC | 5 cut(s) | 578, 956, 1275, 1278, 1343 |
| ApoI | RAATTY | 1 cut(s) | 851 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 749, 781 |
| Asp718I | GGTACC | 1 cut(s) | 1366 |
| AspLEI | GCGC | 3 cut(s) | 16, 1264, 1649 |
| AspS9I | GGNCC | 3 cut(s) | 1133, 1710, 1750 |
| AsuHPI | GGTGA | 6 cut(s) | 90, 96, 932, 1104, 1321, 1462 |
| AvaI | CYCGRG | 1 cut(s) | 1370 |
| AvaII | GGWCC | 2 cut(s) | 1133, 1750 |
| AxyI | CCTNAGG | 1 cut(s) | 489 |
| BaeGI | GKGCMC | 1 cut(s) | 528 |
| BanI | GGYRCC | 1 cut(s) | 1366 |
| BanII | GRGCYC | 3 cut(s) | 801, 940, 1112 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| Bbv12I | GWGCWC | 1 cut(s) | 940 |
| BbvCI | CCTCAGC | 1 cut(s) | 120 |
| BbvI | GCAGC | 5 cut(s) | 565, 943, 1262, 1265, 1330 |
| BclI | TGATCA | 1 cut(s) | 507 |
| BcoDI | GTCTC | 3 cut(s) | 84, 420, 555 |
| BcuI | ACTAGT | 1 cut(s) | 1598 |
| BfaI | CTAG | 1 cut(s) | 1599 |
| BfmI | CTRYAG | 2 cut(s) | 1080, 1714 |
| BfoI | RGCGCY | 1 cut(s) | 17 |
| BfrI | CTTAAG | 1 cut(s) | 1096 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 704 |
| BisI | GCNGC | 6 cut(s) | 125, 579, 957, 1276, 1279, 1344 |
| BlpI | GCTNAGC | 1 cut(s) | 795 |
| BlsI | GCNGC | 6 cut(s) | 126, 580, 958, 1277, 1280, 1345 |
| BmcAI | AGTACT | 1 cut(s) | 790 |
| Bme18I | GGWCC | 2 cut(s) | 1133, 1750 |
| BmeT110I | CYCGRG | 1 cut(s) | 1370 |
| BmgT120I | GGNCC | 3 cut(s) | 1133, 1710, 1750 |
| BmiI | GGNNCC | 2 cut(s) | 1179, 1368 |
| BmsI | GCATC | 3 cut(s) | 850, 968, 1525 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| BpmI | CTGGAG | 1 cut(s) | 1212 |
| Bpu10I | CCTNAGC | 1 cut(s) | 120 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 795 |
| BpuEI | CTTGAG | 1 cut(s) | 1658 |
| BsaAI | YACGTR | 1 cut(s) | 448 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1068, 1253 |
| BsaJI | CCNNGG | 1 cut(s) | 1371 |
| BsaWI | WCCGGW | 2 cut(s) | 1135, 1437 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1185, 1215 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 634, 735, 806, 1639 |
| Bse1I | ACTGG | 5 cut(s) | 776, 1135, 1195, 1618, 1730 |
| Bse21I | CCTNAGG | 1 cut(s) | 489 |
| Bse3DI | GCAATG | 2 cut(s) | 76, 1653 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1068, 1253 |
| BseAI | TCCGGA | 2 cut(s) | 1135, 1437 |
| BseDI | CCNNGG | 1 cut(s) | 1371 |
| BseGI | GGATG | 4 cut(s) | 154, 278, 1388, 1540 |
| BseJI | GATNNNNATC | 2 cut(s) | 1068, 1253 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 634, 735, 806, 1639 |
| BseMI | GCAATG | 2 cut(s) | 76, 1653 |
| BseMII | CTCAG | 5 cut(s) | 134, 480, 786, 1738, 1785 |
| BseNI | ACTGG | 5 cut(s) | 776, 1135, 1195, 1618, 1730 |
| BseRI | GAGGAG | 2 cut(s) | 379, 382 |
| BseSI | GKGCMC | 1 cut(s) | 528 |
| BseXI | GCAGC | 5 cut(s) | 565, 943, 1262, 1265, 1330 |
| BseYI | CCCAGC | 5 cut(s) | 65, 259, 313, 382, 1638 |
| BsgI | GTGCAG | 1 cut(s) | 1008 |
| Bsh1236I | CGCG | 1 cut(s) | 1647 |
| BshFI | GGCC | 3 cut(s) | 739, 968, 1711 |
| BshNI | GGYRCC | 1 cut(s) | 1366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 940 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1370 |
| BsiSI | CCGG | 3 cut(s) | 1136, 1438, 1556 |
| BslFI | GGGAC | 3 cut(s) | 40, 770, 1683 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 634, 735, 806, 1639 |
| BsmAI | GTCTC | 3 cut(s) | 84, 420, 555 |
| BsmBI | CGTCTC | 1 cut(s) | 84 |
| BsmFI | GGGAC | 3 cut(s) | 40, 770, 1683 |
| BsmI | GAATGC | 2 cut(s) | 1014, 1346 |
| BsnI | GGCC | 3 cut(s) | 739, 968, 1711 |
| BsoBI | CYCGRG | 1 cut(s) | 1370 |
| Bsp1286I | GDGCHC | 4 cut(s) | 528, 801, 940, 1112 |
| Bsp13I | TCCGGA | 2 cut(s) | 1135, 1437 |
| Bsp143I | GATC | 3 cut(s) | 507, 1063, 1069 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 795 |
| BspACI | CCGC | 2 cut(s) | 125, 1384 |
| BspANI | GGCC | 3 cut(s) | 739, 968, 1711 |
| BspCNI | CTCAG | 5 cut(s) | 133, 481, 787, 1737, 1784 |
| BspEI | TCCGGA | 2 cut(s) | 1135, 1437 |
| BspFNI | CGCG | 1 cut(s) | 1647 |
| BspHI | TCATGA | 1 cut(s) | 1467 |
| BspLI | GGNNCC | 2 cut(s) | 1179, 1368 |
| BspMAI | CTGCAG | 1 cut(s) | 1084 |
| BspT107I | GGYRCC | 1 cut(s) | 1366 |
| BspTI | CTTAAG | 1 cut(s) | 1096 |
| BsrBI | CCGCTC | 1 cut(s) | 1386 |
| BsrDI | GCAATG | 2 cut(s) | 76, 1653 |
| BsrI | ACTGG | 5 cut(s) | 776, 1135, 1195, 1618, 1730 |
| BssECI | CCNNGG | 1 cut(s) | 1371 |
| BssMI | GATC | 3 cut(s) | 507, 1063, 1069 |
| BssNAI | GTATAC | 1 cut(s) | 1216 |
| Bst1107I | GTATAC | 1 cut(s) | 1216 |
| Bst4CI | ACNGT | 1 cut(s) | 523 |
| Bst6I | CTCTTC | 3 cut(s) | 453, 992, 1356 |
| BstAFI | CTTAAG | 1 cut(s) | 1096 |
| BstBAI | YACGTR | 1 cut(s) | 448 |
| BstC8I | GCNNGC | 2 cut(s) | 129, 1041 |
| BstDEI | CTNAG | 5 cut(s) | 120, 489, 795, 1724, 1771 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 632 |
| BstF5I | GGATG | 4 cut(s) | 154, 278, 1388, 1540 |
| BstFNI | CGCG | 1 cut(s) | 1647 |
| BstH2I | RGCGCY | 1 cut(s) | 17 |
| BstHHI | GCGC | 3 cut(s) | 16, 1264, 1649 |
| BstKTI | GATC | 3 cut(s) | 510, 1066, 1072 |
| BstMAI | GTCTC | 3 cut(s) | 84, 420, 555 |
| BstMBI | GATC | 3 cut(s) | 507, 1063, 1069 |
| BstSFI | CTRYAG | 2 cut(s) | 1080, 1714 |
| BstSLI | GKGCMC | 1 cut(s) | 528 |
| BstSNI | TACGTA | 1 cut(s) | 448 |
| BstUI | CGCG | 1 cut(s) | 1647 |
| BstV1I | GCAGC | 5 cut(s) | 565, 943, 1262, 1265, 1330 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1766 |
| BstZ17I | GTATAC | 1 cut(s) | 1216 |
| Bsu36I | CCTNAGG | 1 cut(s) | 489 |
| BsuRI | GGCC | 3 cut(s) | 739, 968, 1711 |
| BtgZI | GCGATG | 1 cut(s) | 1296 |
| BtsCI | GGATG | 4 cut(s) | 154, 278, 1388, 1540 |
| BtsIMutI | CAGTG | 2 cut(s) | 783, 1737 |
| Cac8I | GCNNGC | 2 cut(s) | 129, 1041 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1278 |
| CciI | TCATGA | 1 cut(s) | 1467 |
| CfoI | GCGC | 3 cut(s) | 16, 1264, 1649 |
| Cfr13I | GGNCC | 3 cut(s) | 1133, 1710, 1750 |
| Csp6I | GTAC | 3 cut(s) | 789, 1145, 1367 |
| CviAII | CATG | 2 cut(s) | 1468, 1487 |
| CviQI | GTAC | 3 cut(s) | 789, 1145, 1367 |
| DdeI | CTNAG | 5 cut(s) | 120, 489, 795, 1724, 1771 |
| DpnI | GATC | 3 cut(s) | 509, 1065, 1071 |
| DpnII | GATC | 3 cut(s) | 507, 1063, 1069 |
| Eam1104I | CTCTTC | 3 cut(s) | 453, 992, 1356 |
| EarI | CTCTTC | 3 cut(s) | 453, 992, 1356 |
| Ecl136II | GAGCTC | 1 cut(s) | 938 |
| Eco105I | TACGTA | 1 cut(s) | 448 |
| Eco147I | AGGCCT | 1 cut(s) | 968 |
| Eco24I | GRGCYC | 3 cut(s) | 801, 940, 1112 |
| Eco32I | GATATC | 1 cut(s) | 1378 |
| Eco47I | GGWCC | 2 cut(s) | 1133, 1750 |
| Eco53kI | GAGCTC | 1 cut(s) | 938 |
| Eco57I | CTGAAG | 3 cut(s) | 15, 615, 1170 |
| Eco81I | CCTNAGG | 1 cut(s) | 489 |
| Eco88I | CYCGRG | 1 cut(s) | 1370 |
| EcoICRI | GAGCTC | 1 cut(s) | 938 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 632 |
| EcoRV | GATATC | 1 cut(s) | 1378 |
| EcoT38I | GRGCYC | 3 cut(s) | 801, 940, 1112 |
| Esp3I | CGTCTC | 1 cut(s) | 84 |
| FaeI | CATG | 2 cut(s) | 1471, 1490 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 557, 589 |
| FaqI | GGGAC | 3 cut(s) | 40, 770, 1683 |
| FatI | CATG | 2 cut(s) | 1467, 1486 |
| FbaI | TGATCA | 1 cut(s) | 507 |
| FblI | GTMKAC | 2 cut(s) | 1215, 1322 |
| Fnu4HI | GCNGC | 6 cut(s) | 125, 579, 957, 1276, 1279, 1344 |
| FokI | GGATG | 4 cut(s) | 141, 265, 1375, 1547 |
| FriOI | GRGCYC | 3 cut(s) | 801, 940, 1112 |
| Fsp4HI | GCNGC | 6 cut(s) | 125, 579, 957, 1276, 1279, 1344 |
| FspBI | CTAG | 1 cut(s) | 1599 |
| GlaI | GCGC | 3 cut(s) | 15, 1263, 1648 |
| GluI | GCNGC | 6 cut(s) | 125, 579, 957, 1276, 1279, 1344 |
| GsaI | CCCAGC | 5 cut(s) | 69, 263, 317, 386, 1642 |
| GsuI | CTGGAG | 1 cut(s) | 1212 |
| HaeII | RGCGCY | 1 cut(s) | 17 |
| HaeIII | GGCC | 3 cut(s) | 739, 968, 1711 |
| HapII | CCGG | 3 cut(s) | 1136, 1438, 1556 |
| HhaI | GCGC | 3 cut(s) | 16, 1264, 1649 |
| Hin1II | CATG | 2 cut(s) | 1471, 1490 |
| Hin6I | GCGC | 3 cut(s) | 14, 1262, 1647 |
| HinP1I | GCGC | 3 cut(s) | 14, 1262, 1647 |
| HincII | GTYRAC | 1 cut(s) | 1323 |
| HindII | GTYRAC | 1 cut(s) | 1323 |
| HindIII | AAGCTT | 1 cut(s) | 1297 |
| HpaII | CCGG | 3 cut(s) | 1136, 1438, 1556 |
| HphI | GGTGA | 6 cut(s) | 90, 96, 932, 1104, 1321, 1462 |
| Hpy166II | GTNNAC | 2 cut(s) | 1216, 1323 |
| Hpy188I | TCNGA | 8 cut(s) | 595, 681, 964, 978, 1230, 1248, 1774, 1793 |
| Hpy8I | GTNNAC | 2 cut(s) | 1216, 1323 |
| HpyAV | CCTTC | 5 cut(s) | 366, 1145, 1191, 1300, 1431 |
| HpyCH4III | ACNGT | 1 cut(s) | 523 |
| HpyCH4IV | ACGT | 3 cut(s) | 77, 447, 1075 |
| HpyCH4V | TGCA | 7 cut(s) | 770, 959, 1025, 1082, 1166, 1346, 1658 |
| HpyF3I | CTNAG | 5 cut(s) | 120, 489, 795, 1724, 1771 |
| HpySE526I | ACGT | 3 cut(s) | 77, 447, 1075 |
| Hsp92II | CATG | 2 cut(s) | 1471, 1490 |
| HspAI | GCGC | 3 cut(s) | 14, 1262, 1647 |
| Kpn2I | TCCGGA | 2 cut(s) | 1135, 1437 |
| KpnI | GGTACC | 1 cut(s) | 1370 |
| Ksp22I | TGATCA | 1 cut(s) | 507 |
| Kzo9I | GATC | 3 cut(s) | 507, 1063, 1069 |
| LmnI | GCTCC | 1 cut(s) | 831 |
| Lsp1109I | GCAGC | 5 cut(s) | 565, 943, 1262, 1265, 1330 |
| LweI | GCATC | 3 cut(s) | 850, 968, 1525 |
| MaeI | CTAG | 1 cut(s) | 1599 |
| MaeII | ACGT | 3 cut(s) | 77, 447, 1075 |
| MaeIII | GTNAC | 3 cut(s) | 640, 1126, 1609 |
| MalI | GATC | 3 cut(s) | 509, 1065, 1071 |
| MbiI | CCGCTC | 1 cut(s) | 1386 |
| MboI | GATC | 3 cut(s) | 507, 1063, 1069 |
| MfeI | CAATTG | 2 cut(s) | 538, 1745 |
| MhlI | GDGCHC | 4 cut(s) | 528, 801, 940, 1112 |
| MluCI | AATT | 5 cut(s) | 142, 538, 851, 1220, 1745 |
| MlyI | GAGTC | 5 cut(s) | 1133, 1328, 1412, 1665, 1689 |
| MmeI | TCCRAC | 3 cut(s) | 909, 1066, 1486 |
| MroI | TCCGGA | 2 cut(s) | 1135, 1437 |
| MseI | TTAA | 3 cut(s) | 366, 951, 1097 |
| MspA1I | CMGCKG | 1 cut(s) | 1275 |
| MspCI | CTTAAG | 1 cut(s) | 1096 |
| MspI | CCGG | 3 cut(s) | 1136, 1438, 1556 |
| MunI | CAATTG | 2 cut(s) | 538, 1745 |
| Mva1269I | GAATGC | 2 cut(s) | 1014, 1346 |
| MvnI | CGCG | 1 cut(s) | 1647 |
| NdeII | GATC | 3 cut(s) | 507, 1063, 1069 |
| NlaIII | CATG | 2 cut(s) | 1471, 1490 |
| NlaIV | GGNNCC | 2 cut(s) | 1179, 1368 |
| NmuCI | GTSAC | 1 cut(s) | 640 |
| PagI | TCATGA | 1 cut(s) | 1467 |
| PceI | AGGCCT | 1 cut(s) | 968 |
| PctI | GAATGC | 2 cut(s) | 1014, 1346 |
| PfeI | GAWTC | 5 cut(s) | 484, 719, 1102, 1249, 1312 |
| PflFI | GACNNNGTC | 1 cut(s) | 761 |
| PkrI | GCNGC | 6 cut(s) | 126, 580, 958, 1277, 1280, 1345 |
| PleI | GAGTC | 5 cut(s) | 1133, 1327, 1411, 1665, 1689 |
| PpsI | GAGTC | 5 cut(s) | 1133, 1327, 1411, 1665, 1689 |
| Ppu21I | YACGTR | 1 cut(s) | 448 |
| Psp124BI | GAGCTC | 1 cut(s) | 940 |
| Psp1406I | AACGTT | 1 cut(s) | 1075 |
| PspFI | CCCAGC | 5 cut(s) | 65, 259, 313, 382, 1638 |
| PspN4I | GGNNCC | 2 cut(s) | 1179, 1368 |
| PspPI | GGNCC | 3 cut(s) | 1133, 1710, 1750 |
| PstI | CTGCAG | 1 cut(s) | 1084 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1278 |
| PsyI | GACNNNGTC | 1 cut(s) | 761 |
| PvuII | CAGCTG | 1 cut(s) | 1275 |
| RsaI | GTAC | 3 cut(s) | 790, 1146, 1368 |
| RsaNI | GTAC | 3 cut(s) | 789, 1145, 1367 |
| SacI | GAGCTC | 1 cut(s) | 940 |
| SalI | GTCGAC | 1 cut(s) | 1321 |
| SaqAI | TTAA | 3 cut(s) | 366, 951, 1097 |
| SatI | GCNGC | 6 cut(s) | 125, 579, 957, 1276, 1279, 1344 |
| Sau3AI | GATC | 3 cut(s) | 507, 1063, 1069 |
| Sau96I | GGNCC | 3 cut(s) | 1133, 1710, 1750 |
| ScaI | AGTACT | 1 cut(s) | 790 |
| SchI | GAGTC | 5 cut(s) | 1133, 1328, 1412, 1665, 1689 |
| SduI | GDGCHC | 4 cut(s) | 528, 801, 940, 1112 |
| SfaNI | GCATC | 3 cut(s) | 850, 968, 1525 |
| SfcI | CTRYAG | 2 cut(s) | 1080, 1714 |
| SinI | GGWCC | 2 cut(s) | 1133, 1750 |
| SmlI | CTYRAG | 2 cut(s) | 1096, 1673 |
| SmoI | CTYRAG | 2 cut(s) | 1096, 1673 |
| SnaBI | TACGTA | 1 cut(s) | 448 |
| SpeI | ACTAGT | 1 cut(s) | 1598 |
| Sse9I | AATT | 5 cut(s) | 142, 538, 851, 1220, 1745 |
| SseBI | AGGCCT | 1 cut(s) | 968 |
| SsiI | CCGC | 2 cut(s) | 125, 1384 |
| SspI | AATATT | 1 cut(s) | 39 |
| SspMI | CTAG | 1 cut(s) | 1599 |
| SstI | GAGCTC | 1 cut(s) | 940 |
| StuI | AGGCCT | 1 cut(s) | 968 |
| TaaI | ACNGT | 1 cut(s) | 523 |
| TaiI | ACGT | 3 cut(s) | 80, 450, 1078 |
| TaqI | TCGA | 4 cut(s) | 1062, 1322, 1460, 1480 |
| TasI | AATT | 5 cut(s) | 142, 538, 851, 1220, 1745 |
| TatI | WGTACW | 1 cut(s) | 788 |
| TauI | GCSGC | 1 cut(s) | 127 |
| TfiI | GAWTC | 5 cut(s) | 484, 719, 1102, 1249, 1312 |
| Tru1I | TTAA | 3 cut(s) | 366, 951, 1097 |
| Tru9I | TTAA | 3 cut(s) | 366, 951, 1097 |
| TscAI | CASTG | 2 cut(s) | 783, 1737 |
| TseFI | GTSAC | 1 cut(s) | 640 |
| TseI | GCWGC | 5 cut(s) | 578, 956, 1275, 1278, 1343 |
| Tsp45I | GTSAC | 1 cut(s) | 640 |
| TspGWI | ACGGA | 2 cut(s) | 228, 1340 |
| TspRI | CASTG | 2 cut(s) | 783, 1737 |
| Tth111I | GACNNNGTC | 1 cut(s) | 761 |
| Vha464I | CTTAAG | 1 cut(s) | 1096 |
| VpaK11BI | GGWCC | 2 cut(s) | 1133, 1750 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 632 |
| XapI | RAATTY | 1 cut(s) | 851 |
| XmiI | GTMKAC | 2 cut(s) | 1215, 1322 |
| XspI | CTAG | 1 cut(s) | 1599 |
| ZrmI | AGTACT | 1 cut(s) | 790 |