Rmu_ssc0000008.1_g000002

RNA helicase SDE3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000008.1
OG0000595
Physical Location & Seq
Forward (+)
2897 .. 6703
3807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000008.1_g000002.1.cds

Sequence Viewer

Length: 2091 bp
atggggtcatctaattctaaaccacatccagcctccgcagaatccccaccatattattctaaaccatctccatcttccccgaaacccccaccatattcttctaaaccaccttcatctccagcttgcccacaacccccaccatattcttctaaaccaccttcatccccagcttcttctaaaccaccttcatctccagtttccccacaacccccagcatattcttctaagccaccttcatccccagcatattcttctaaaccaccttcatctccagtttccccacaacccccagcatattcttctaaaccatcttcatctccattttccccaaagtgccctcctgtctttaagtcagttctacgcccagcctcctcctcctcaaataatgatgatataagtcaacaccaacaatatgagaagagaacagcttttgtgtgtcttgaaaaggatccattacctgtattcatgattcctgaggatatcgaagccttgatcaagaaagaaattgcgcccaaagttctgaatcgcccattatctcccacaacatacaaggactactttgccgctctcttatattctgaagatttctacttggagaaatggagtgatttccttttgaagggtgtgacattagcgttggatgaaagttcaatttataaaaaccggaaaaaggaagcactttataaaaatcggaaaaaggaagataaggaagacaaaacctttgtagcatttgagcttgattgtgttcctgagaaacggccattcctcttatcaagggacttggtccttgcacgaccagtgggtaatagtactactgagccctttaagggcctcatctataaagttgttgggagcaatcgcgttttggttgaatttgaggatgacttttattcttatcatcattccaacaaaaaatatgatatcagcttctcattcaatagagtttgtttgaaaagagcccaccatgccgtaaaagctgcatcagatgccttgtttcagaacttgctcttccctgactgtgactcacgagcaagcattcctacagcaccagctctgctttctactacctgtcataagcttgatcaagatcaacgttcggcagtcggacatatcttaaggattcagggctcaccaccttatgtagtaactggtccggactgtgaagccaaatcttttgcatatttaagagaaccttcaagaactggagtggttgttagtgaagcagtataccaattatgtcggaagtcaccagagtatcgcattcttatctgtgcacctactaacagctgctgcgatatgctgatgagaagcttggtgaaggtgattccagggtcgactatgtttcgtgccaatgctgcattccgagagagagatgaggtacctgaggacatcctccgctcatccctttacaaagagtcttgtttttcttgtcctgcaatagagaaactccgggaatacaaggtgattttctcaactttcgtgagtagcttccgactacatgataaaggcatagctgctggacattttagccatatttttctggtggatgcttcatctactattgagccggaaacattggtcgccctgactaacttcgctgtcaaggccactactgttatagttactggtaatcatggaaatagtccgctctgggttcgcgctgacattgcaaggaaaaagggactcaagatttcctactttgaacgactctgcaagctcaggccatatagaagccccagtccaatgttcatcacacaactagacctgaaccaaaaccactccaatgtaaggccatttggggagttggccgaaaagacattgagtgatacgaccgagctgaaggtatcgtttgaccaaggagtagttcgtaacatagaattatcatccattgatctctttcggccagtccggattggattgatgcgattcgccacgcaccattcaaatcagaaacctcgctcggccattcggccgcgagttggcacgcccgcgcaatttcagaaggacaattcaaccacaagtccctcagctctcatttcggccgagacgattttgaggcaaacatcttttggcacgcccagtgggacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

696

Amino Acids

77.24

Weight (kDa)

9.27

Isoelectric Point (pI)

64.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 657, 684
Acc65I GGTACC 1 cut(s) 1378
AccB1I GGYRCC 1 cut(s) 1378
AccBSI CCGCTC 3 cut(s) 566, 1398, 1648
AccI GTMKAC 2 cut(s) 1227, 1334
AccII CGCG 4 cut(s) 861, 1659, 1975, 1991
AccIII TCCGGA 2 cut(s) 1153, 1908
AciI CCGC 6 cut(s) 36, 564, 1396, 1646, 1973, 1989
AclI AACGTT 1 cut(s) 1093
AclWI GGATC 2 cut(s) 443, 456
AcoI YGGCCR 6 cut(s) 758, 1806, 1901, 1962, 1970, 2040
AcsI RAATTY 1 cut(s) 872
AcuI CTGAAG 2 cut(s) 600, 1859
AfaI GTAC 2 cut(s) 811, 1380
AfiI CCNNNNNNNGG 5 cut(s) 619, 670, 827, 1788, 1979
AflII CTTAAG 1 cut(s) 1114
AjnI CCWGG 1 cut(s) 1327
AjuI GAANNNNNNNTTGG 4 cut(s) 1343, 1375, 1848, 1880
Alw21I GWGCWC 1 cut(s) 1276
Alw26I GTCTC 1 cut(s) 2039
Alw44I GTGCAC 1 cut(s) 1272
AlwI GGATC 2 cut(s) 443, 456
AlwNI CAGNNNCTG 1 cut(s) 1290
Aor13HI TCCGGA 2 cut(s) 1153, 1908
ApaLI GTGCAC 1 cut(s) 1272
ApeKI GCWGC 5 cut(s) 977, 1287, 1290, 1355, 1514
ApoI RAATTY 1 cut(s) 872
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
Asp718I GGTACC 1 cut(s) 1378
AspLEI GCGC 3 cut(s) 511, 1661, 1993
AspS9I GGNCC 3 cut(s) 784, 829, 1151
AsuC2I CCSGG 1 cut(s) 1451
AsuHPI GGTGA 5 cut(s) 1122, 1239, 1327, 1333, 1474
AvaII GGWCC 2 cut(s) 784, 1151
AxyI CCTNAGG 2 cut(s) 474, 1383
BaeGI GKGCMC 2 cut(s) 338, 1276
BaeI ACNNNNGTAYC 2 cut(s) 1238, 1271
BamHI GGATCC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 1378
BanII GRGCYC 3 cut(s) 822, 961, 1130
BauI CACGAG 1 cut(s) 1026
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 1276
BbvCI CCTCAGC 1 cut(s) 2026
BbvI GCAGC 5 cut(s) 964, 1274, 1277, 1342, 1501
BccI CCATC 3 cut(s) 73, 79, 316
BceAI ACGGC 2 cut(s) 773, 953
BciT130I CCWGG 1 cut(s) 1329
BclI TGATCA 2 cut(s) 492, 1081
BcnI CCSGG 1 cut(s) 1451
BcoDI GTCTC 1 cut(s) 2039
BfaI CTAG 1 cut(s) 1760
BfmI CTRYAG 1 cut(s) 1041
BfrI CTTAAG 1 cut(s) 1114
BisI GCNGC 7 cut(s) 564, 978, 1288, 1291, 1356, 1515, 1973
BlsI GCNGC 7 cut(s) 565, 979, 1289, 1292, 1357, 1516, 1974
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 2 cut(s) 1329, 1451
Bme18I GGWCC 2 cut(s) 784, 1151
BmgT120I GGNCC 3 cut(s) 784, 829, 1151
BmiI GGNNCC 2 cut(s) 450, 1380
BmrFI CCNGG 2 cut(s) 1329, 1451
BmrI ACTGGG 2 cut(s) 1731, 2073
BmsI GCATC 4 cut(s) 976, 989, 1537, 1911
BmuI ACTGGG 2 cut(s) 1731, 2073
BpiI GAAGAC 1 cut(s) 717
BpmI CTGGAG 4 cut(s) 102, 177, 255, 1224
Bpu10I CCTNAGC 2 cut(s) 1718, 2026
BpuEI CTTGAG 1 cut(s) 1670
BpuMI CCSGG 1 cut(s) 1451
BsaBI GATNNNNATC 1 cut(s) 1086
BsaJI CCNNGG 2 cut(s) 1328, 1855
BsaWI WCCGGW 3 cut(s) 663, 1153, 1908
BsaXI ACNNNNNCTCC 2 cut(s) 1197, 1227
Bsc4I CCNNNNNNNGG 5 cut(s) 619, 670, 827, 1788, 1979
Bse1I ACTGG 9 cut(s) 194, 272, 797, 1153, 1207, 1630, 1737, 1904, 2079
Bse21I CCTNAGG 2 cut(s) 474, 1383
Bse3DI GCAATG 1 cut(s) 1665
Bse8I GATNNNNATC 1 cut(s) 1086
BseAI TCCGGA 2 cut(s) 1153, 1908
BseBI CCWGG 1 cut(s) 1329
BseDI CCNNGG 2 cut(s) 1328, 1855
BseGI GGATG 9 cut(s) 25, 161, 236, 646, 886, 1389, 1400, 1552, 1883
BseJI GATNNNNATC 1 cut(s) 1086
BseLI CCNNNNNNNGG 5 cut(s) 619, 670, 827, 1788, 1979
BseMI GCAATG 1 cut(s) 1665
BseMII CTCAG 6 cut(s) 465, 741, 807, 1374, 1732, 2040
BseNI ACTGG 9 cut(s) 194, 272, 797, 1153, 1207, 1630, 1737, 1904, 2079
BseRI GAGGAG 3 cut(s) 361, 364, 367
BseSI GKGCMC 2 cut(s) 338, 1276
BseX3I CGGCCG 2 cut(s) 1970, 2040
BseXI GCAGC 5 cut(s) 964, 1274, 1277, 1342, 1501
BseYI CCCAGC 5 cut(s) 166, 211, 241, 289, 364
Bsh1236I CGCG 4 cut(s) 861, 1659, 1975, 1991
Bsh1285I CGRYCG 3 cut(s) 1833, 1973, 2043
BshNI GGYRCC 1 cut(s) 1378
BsiEI CGRYCG 3 cut(s) 1833, 1973, 2043
BsiHKAI GWGCWC 1 cut(s) 1276
BsiSI CCGG 5 cut(s) 664, 1154, 1450, 1568, 1909
BslFI GGGAC 3 cut(s) 791, 1695, 2007
BslI CCNNNNNNNGG 5 cut(s) 619, 670, 827, 1788, 1979
BsmAI GTCTC 1 cut(s) 2039
BsmBI CGTCTC 1 cut(s) 2039
BsmFI GGGAC 3 cut(s) 791, 1695, 2007
BsmI GAATGC 3 cut(s) 1035, 1260, 1358
Bsp1286I GDGCHC 5 cut(s) 338, 822, 961, 1130, 1276
Bsp13I TCCGGA 2 cut(s) 1153, 1908
Bsp143I GATC 5 cut(s) 448, 492, 1081, 1087, 1891
BspACI CCGC 6 cut(s) 36, 564, 1396, 1646, 1973, 1989
BspCNI CTCAG 6 cut(s) 466, 742, 808, 1375, 1731, 2039
BspEI TCCGGA 2 cut(s) 1153, 1908
BspFNI CGCG 4 cut(s) 861, 1659, 1975, 1991
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 2 cut(s) 450, 1380
BspPI GGATC 2 cut(s) 443, 456
BspQI GCTCTTC 1 cut(s) 1013
BspT107I GGYRCC 1 cut(s) 1378
BspTI CTTAAG 1 cut(s) 1114
BsrBI CCGCTC 3 cut(s) 566, 1398, 1648
BsrDI GCAATG 1 cut(s) 1665
BsrI ACTGG 9 cut(s) 194, 272, 797, 1153, 1207, 1630, 1737, 1904, 2079
BssECI CCNNGG 2 cut(s) 1328, 1855
BssMI GATC 5 cut(s) 448, 492, 1081, 1087, 1891
BssNAI GTATAC 1 cut(s) 1228
BssSI CACGAG 1 cut(s) 1026
BssT1I CCWWGG 1 cut(s) 1855
Bst1107I GTATAC 1 cut(s) 1228
Bst2BI CACGAG 1 cut(s) 1026
Bst2UI CCWGG 1 cut(s) 1329
Bst4CI ACNGT 3 cut(s) 1019, 1160, 1615
Bst6I CTCTTC 2 cut(s) 413, 1013
BstAFI CTTAAG 1 cut(s) 1114
BstAPI GCANNNNNTGC 1 cut(s) 986
BstC8I GCNNGC 6 cut(s) 124, 1033, 1715, 1985, 1989, 2075
BstDEI CTNAG 7 cut(s) 225, 474, 750, 816, 1383, 1718, 2026
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 9 cut(s) 25, 161, 236, 646, 886, 1389, 1400, 1552, 1883
BstFNI CGCG 4 cut(s) 861, 1659, 1975, 1991
BstHHI GCGC 3 cut(s) 511, 1661, 1993
BstKTI GATC 5 cut(s) 451, 495, 1084, 1090, 1894
BstMAI GTCTC 1 cut(s) 2039
BstMBI GATC 5 cut(s) 448, 492, 1081, 1087, 1891
BstMCI CGRYCG 3 cut(s) 1833, 1973, 2043
BstMWI GCNNNNNNNGC 6 cut(s) 965, 974, 986, 1355, 1604, 1667
BstNI CCWGG 1 cut(s) 1329
BstSCI CCNGG 2 cut(s) 1327, 1449
BstSFI CTRYAG 1 cut(s) 1041
BstSLI GKGCMC 2 cut(s) 338, 1276
BstUI CGCG 4 cut(s) 861, 1659, 1975, 1991
BstV1I GCAGC 5 cut(s) 964, 1274, 1277, 1342, 1501
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BstZ17I GTATAC 1 cut(s) 1228
BstZI CGGCCG 2 cut(s) 1970, 2040
Bsu36I CCTNAGG 2 cut(s) 474, 1383
BtsCI GGATG 9 cut(s) 25, 161, 236, 646, 886, 1389, 1400, 1552, 1883
BtsIMutI CAGTG 2 cut(s) 804, 2086
Cac8I GCNNGC 6 cut(s) 124, 1033, 1715, 1985, 1989, 2075
CaiI CAGNNNCTG 1 cut(s) 1290
CciI TCATGA 1 cut(s) 465
CfoI GCGC 3 cut(s) 511, 1661, 1993
Cfr13I GGNCC 3 cut(s) 784, 829, 1151
Csp6I GTAC 2 cut(s) 810, 1379
CviAII CATG 4 cut(s) 466, 965, 1499, 1634
CviQI GTAC 2 cut(s) 810, 1379
DdeI CTNAG 7 cut(s) 225, 474, 750, 816, 1383, 1718, 2026
DpnI GATC 5 cut(s) 450, 494, 1083, 1089, 1893
DpnII GATC 5 cut(s) 448, 492, 1081, 1087, 1891
EaeI YGGCCR 6 cut(s) 758, 1806, 1901, 1962, 1970, 2040
EagI CGGCCG 2 cut(s) 1970, 2040
Eam1104I CTCTTC 2 cut(s) 413, 1013
EarI CTCTTC 2 cut(s) 413, 1013
EclXI CGGCCG 2 cut(s) 1970, 2040
Eco130I CCWWGG 1 cut(s) 1855
Eco24I GRGCYC 3 cut(s) 822, 961, 1130
Eco32I GATATC 2 cut(s) 481, 922
Eco47I GGWCC 2 cut(s) 784, 1151
Eco52I CGGCCG 2 cut(s) 1970, 2040
Eco57I CTGAAG 2 cut(s) 600, 1859
Eco81I CCTNAGG 2 cut(s) 474, 1383
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 829
EcoRII CCWGG 1 cut(s) 1327
EcoRV GATATC 2 cut(s) 481, 922
EcoT14I CCWWGG 1 cut(s) 1855
EcoT38I GRGCYC 3 cut(s) 822, 961, 1130
ErhI CCWWGG 1 cut(s) 1855
Esp3I CGTCTC 1 cut(s) 2039
FaeI CATG 4 cut(s) 469, 968, 1502, 1637
FalI AAGNNNNNCTT 4 cut(s) 542, 574, 1177, 1209
FaqI GGGAC 3 cut(s) 791, 1695, 2007
FatI CATG 4 cut(s) 465, 964, 1498, 1633
FauI CCCGC 1 cut(s) 1996
FbaI TGATCA 2 cut(s) 492, 1081
FblI GTMKAC 2 cut(s) 1227, 1334
Fnu4HI GCNGC 7 cut(s) 564, 978, 1288, 1291, 1356, 1515, 1973
FokI GGATG 9 cut(s) 12, 148, 223, 653, 893, 1376, 1387, 1559, 1870
FriOI GRGCYC 3 cut(s) 822, 961, 1130
Fsp4HI GCNGC 7 cut(s) 564, 978, 1288, 1291, 1356, 1515, 1973
FspBI CTAG 1 cut(s) 1760
GlaI GCGC 3 cut(s) 510, 1660, 1992
GluI GCNGC 7 cut(s) 564, 978, 1288, 1291, 1356, 1515, 1973
GsaI CCCAGC 5 cut(s) 170, 215, 245, 293, 368
GsuI CTGGAG 4 cut(s) 102, 177, 255, 1224
HapII CCGG 5 cut(s) 664, 1154, 1450, 1568, 1909
HhaI GCGC 3 cut(s) 511, 1661, 1993
Hin1II CATG 4 cut(s) 469, 968, 1502, 1637
Hin6I GCGC 3 cut(s) 509, 1659, 1991
HinP1I GCGC 3 cut(s) 509, 1659, 1991
HincII GTYRAC 2 cut(s) 401, 1335
HindII GTYRAC 2 cut(s) 401, 1335
HindIII AAGCTT 2 cut(s) 1076, 1309
HpaII CCGG 5 cut(s) 664, 1154, 1450, 1568, 1909
HphI GGTGA 5 cut(s) 1122, 1239, 1327, 1333, 1474
Hpy166II GTNNAC 4 cut(s) 401, 1228, 1274, 1335
Hpy8I GTNNAC 4 cut(s) 401, 1228, 1274, 1335
HpyCH4III ACNGT 3 cut(s) 1019, 1160, 1615
HpyCH4IV ACGT 1 cut(s) 1093
HpyCH4V TGCA 8 cut(s) 791, 980, 1178, 1274, 1358, 1436, 1670, 1713
HpyF10VI GCNNNNNNNGC 6 cut(s) 965, 974, 986, 1355, 1604, 1667
HpyF3I CTNAG 7 cut(s) 225, 474, 750, 816, 1383, 1718, 2026
HpySE526I ACGT 1 cut(s) 1093
Hsp92II CATG 4 cut(s) 469, 968, 1502, 1637
HspAI GCGC 3 cut(s) 509, 1659, 1991
Kpn2I TCCGGA 2 cut(s) 1153, 1908
KpnI GGTACC 1 cut(s) 1382
Ksp22I TGATCA 2 cut(s) 492, 1081
Kzo9I GATC 5 cut(s) 448, 492, 1081, 1087, 1891
LguI GCTCTTC 1 cut(s) 1013
LmnI GCTCC 1 cut(s) 852
Lsp1109I GCAGC 5 cut(s) 964, 1274, 1277, 1342, 1501
LweI GCATC 4 cut(s) 976, 989, 1537, 1911
MaeI CTAG 1 cut(s) 1760
MaeII ACGT 1 cut(s) 1093
MaeIII GTNAC 6 cut(s) 625, 1019, 1144, 1245, 1621, 1868
MalI GATC 5 cut(s) 450, 494, 1083, 1089, 1893
MbiI CCGCTC 3 cut(s) 566, 1398, 1648
MboI GATC 5 cut(s) 448, 492, 1081, 1087, 1891
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 5 cut(s) 338, 822, 961, 1130, 1276
MluCI AATT 8 cut(s) 13, 504, 651, 872, 1232, 1877, 1994, 2008
MlyI GAGTC 4 cut(s) 1016, 1424, 1677, 1701
MmeI TCCRAC 5 cut(s) 618, 930, 1084, 1220, 1516
MroI TCCGGA 2 cut(s) 1153, 1908
MseI TTAA 4 cut(s) 348, 825, 1115, 1184
MslI CAYNNNNRTG 1 cut(s) 1782
MspA1I CMGCKG 1 cut(s) 1287
MspCI CTTAAG 1 cut(s) 1114
MspI CCGG 5 cut(s) 664, 1154, 1450, 1568, 1909
MspR9I CCNGG 2 cut(s) 1329, 1451
Mva1269I GAATGC 3 cut(s) 1035, 1260, 1358
MvaI CCWGG 1 cut(s) 1329
MvnI CGCG 4 cut(s) 861, 1659, 1975, 1991
MwoI GCNNNNNNNGC 6 cut(s) 965, 974, 986, 1355, 1604, 1667
NciI CCSGG 1 cut(s) 1451
NdeII GATC 5 cut(s) 448, 492, 1081, 1087, 1891
NlaIII CATG 4 cut(s) 469, 968, 1502, 1637
NlaIV GGNNCC 2 cut(s) 450, 1380
NmeAIII GCCGAG 2 cut(s) 1940, 2068
NmuCI GTSAC 3 cut(s) 625, 1019, 1245
PagI TCATGA 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 1013
PcsI WCGNNNNNNNCGW 1 cut(s) 2045
PctI GAATGC 3 cut(s) 1035, 1260, 1358
PfeI GAWTC 6 cut(s) 41, 469, 523, 1120, 1324, 1926
PflFI GACNNNGTC 1 cut(s) 782
PfoI TCCNGGA 1 cut(s) 1449
PkrI GCNGC 7 cut(s) 565, 979, 1289, 1292, 1357, 1516, 1974
PleI GAGTC 4 cut(s) 1016, 1423, 1677, 1701
PpsI GAGTC 4 cut(s) 1016, 1423, 1677, 1701
PsiI TTATAA 2 cut(s) 657, 684
Psp1406I AACGTT 1 cut(s) 1093
Psp6I CCWGG 1 cut(s) 1327
PspFI CCCAGC 5 cut(s) 166, 211, 241, 289, 364
PspGI CCWGG 1 cut(s) 1327
PspN4I GGNNCC 2 cut(s) 450, 1380
PspPI GGNCC 3 cut(s) 784, 829, 1151
PstNI CAGNNNCTG 1 cut(s) 1290
PsuI RGATCY 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 782
PvuII CAGCTG 1 cut(s) 1287
RsaI GTAC 2 cut(s) 811, 1380
RsaNI GTAC 2 cut(s) 810, 1379
RseI CAYNNNNRTG 1 cut(s) 1782
SalI GTCGAC 1 cut(s) 1333
SapI GCTCTTC 1 cut(s) 1013
SaqAI TTAA 4 cut(s) 348, 825, 1115, 1184
SatI GCNGC 7 cut(s) 564, 978, 1288, 1291, 1356, 1515, 1973
Sau3AI GATC 5 cut(s) 448, 492, 1081, 1087, 1891
Sau96I GGNCC 3 cut(s) 784, 829, 1151
ScaI AGTACT 1 cut(s) 811
SchI GAGTC 4 cut(s) 1016, 1424, 1677, 1701
ScrFI CCNGG 2 cut(s) 1329, 1451
SduI GDGCHC 5 cut(s) 338, 822, 961, 1130, 1276
SfaNI GCATC 4 cut(s) 976, 989, 1537, 1911
SfcI CTRYAG 1 cut(s) 1041
SinI GGWCC 2 cut(s) 784, 1151
SmiMI CAYNNNNRTG 1 cut(s) 1782
SmlI CTYRAG 2 cut(s) 1114, 1685
SmoI CTYRAG 2 cut(s) 1114, 1685
Sse9I AATT 8 cut(s) 13, 504, 651, 872, 1232, 1877, 1994, 2008
SsiI CCGC 6 cut(s) 36, 564, 1396, 1646, 1973, 1989
SspMI CTAG 1 cut(s) 1760
StyD4I CCNGG 2 cut(s) 1327, 1449
StyI CCWWGG 1 cut(s) 1855
TaaI ACNGT 3 cut(s) 1019, 1160, 1615
TaiI ACGT 1 cut(s) 1096
TaqI TCGA 2 cut(s) 483, 1334
TaqII GACCGA 1 cut(s) 1847
TasI AATT 8 cut(s) 13, 504, 651, 872, 1232, 1877, 1994, 2008
TatI WGTACW 1 cut(s) 809
TauI GCSGC 2 cut(s) 566, 1975
TfiI GAWTC 6 cut(s) 41, 469, 523, 1120, 1324, 1926
Tru1I TTAA 4 cut(s) 348, 825, 1115, 1184
Tru9I TTAA 4 cut(s) 348, 825, 1115, 1184
TscAI CASTG 2 cut(s) 804, 2086
TseFI GTSAC 3 cut(s) 625, 1019, 1245
TseI GCWGC 5 cut(s) 977, 1287, 1290, 1355, 1514
Tsp45I GTSAC 3 cut(s) 625, 1019, 1245
TspRI CASTG 2 cut(s) 804, 2086
Tth111I GACNNNGTC 1 cut(s) 782
Vha464I CTTAAG 1 cut(s) 1114
VneI GTGCAC 1 cut(s) 1272
VpaK11BI GGWCC 2 cut(s) 784, 1151
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 1 cut(s) 872
XmiI GTMKAC 2 cut(s) 1227, 1334
XspI CTAG 1 cut(s) 1760
ZrmI AGTACT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.