RNA helicase SDE3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOV-10_beta-barrel | PF21634 | 288 - 362 | 2e-08 | Helicase MOV-10, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 252, 819, 846 |
| Acc65I | GGTACC | 1 cut(s) | 1576 |
| AccB1I | GGYRCC | 1 cut(s) | 1576 |
| AccBSI | CCGCTC | 2 cut(s) | 728, 1596 |
| AccI | GTMKAC | 3 cut(s) | 504, 1425, 1532 |
| AccII | CGCG | 3 cut(s) | 1017, 1846, 1857 |
| AccIII | TCCGGA | 1 cut(s) | 1647 |
| AciI | CCGC | 8 cut(s) | 105, 317, 726, 1256, 1594, 1755, 1844, 1933 |
| AclI | AACGTT | 1 cut(s) | 1249 |
| AclWI | GGATC | 3 cut(s) | 122, 605, 618 |
| AcoI | YGGCCR | 2 cut(s) | 920, 1261 |
| AcsI | RAATTY | 2 cut(s) | 822, 1028 |
| AcuI | CTGAAG | 2 cut(s) | 762, 1380 |
| AcyI | GRCGYC | 1 cut(s) | 1143 |
| AfaI | GTAC | 3 cut(s) | 188, 967, 1578 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 144, 781, 983 |
| AflII | CTTAAG | 1 cut(s) | 1270 |
| AflIII | ACRYGT | 1 cut(s) | 1015 |
| AhlI | ACTAGT | 1 cut(s) | 1808 |
| AjnI | CCWGG | 2 cut(s) | 143, 1831 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 154, 186, 430, 462, 1198, 1230, 1541, 1573 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 909, 941 |
| AlwI | GGATC | 3 cut(s) | 122, 605, 618 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1488 |
| Aor13HI | TCCGGA | 1 cut(s) | 1647 |
| AoxI | GGCC | 2 cut(s) | 920, 1261 |
| ApeKI | GCWGC | 5 cut(s) | 150, 1133, 1485, 1488, 1553 |
| ApoI | RAATTY | 2 cut(s) | 822, 1028 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 101, 133, 932, 964 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 70 |
| Asp718I | GGTACC | 1 cut(s) | 1576 |
| AspLEI | GCGC | 4 cut(s) | 150, 1474, 1848, 1859 |
| AspS9I | GGNCC | 1 cut(s) | 1307 |
| AsuHPI | GGTGA | 5 cut(s) | 225, 1278, 1525, 1531, 1672 |
| AvaII | GGWCC | 1 cut(s) | 1307 |
| AxyI | CCTNAGG | 3 cut(s) | 636, 912, 1581 |
| BaeGI | GKGCMC | 1 cut(s) | 675 |
| BalI | TGGCCA | 1 cut(s) | 1263 |
| BamHI | GGATCC | 1 cut(s) | 610 |
| BanI | GGYRCC | 1 cut(s) | 1576 |
| BanII | GRGCYC | 2 cut(s) | 1117, 1286 |
| BauI | CACGAG | 1 cut(s) | 195 |
| BbvCI | CCTCAGC | 1 cut(s) | 411 |
| BbvI | GCAGC | 5 cut(s) | 162, 1120, 1472, 1475, 1540 |
| BccI | CCATC | 5 cut(s) | 391, 451, 469, 487, 1031 |
| BceAI | ACGGC | 1 cut(s) | 935 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1313, 1347 |
| BciT130I | CCWGG | 2 cut(s) | 145, 1833 |
| BclI | TGATCA | 2 cut(s) | 654, 1237 |
| BcuI | ACTAGT | 1 cut(s) | 1808 |
| BfaI | CTAG | 1 cut(s) | 1809 |
| BfmI | CTRYAG | 1 cut(s) | 1924 |
| BfrI | CTTAAG | 1 cut(s) | 1270 |
| BisI | GCNGC | 7 cut(s) | 151, 726, 1134, 1486, 1489, 1554, 1933 |
| BlpI | GCTNAGC | 1 cut(s) | 1916 |
| BlsI | GCNGC | 7 cut(s) | 152, 727, 1135, 1487, 1490, 1555, 1934 |
| BmcAI | AGTACT | 1 cut(s) | 188 |
| Bme1390I | CCNGG | 2 cut(s) | 145, 1833 |
| Bme18I | GGWCC | 1 cut(s) | 1307 |
| BmgT120I | GGNCC | 1 cut(s) | 1307 |
| BmiI | GGNNCC | 2 cut(s) | 612, 1578 |
| BmrFI | CCNGG | 2 cut(s) | 145, 1833 |
| BmrI | ACTGGG | 1 cut(s) | 132 |
| BmsI | GCATC | 4 cut(s) | 17, 296, 1145, 1735 |
| BmuI | ACTGGG | 1 cut(s) | 132 |
| BpmI | CTGGAG | 1 cut(s) | 1422 |
| Bpu10I | CCTNAGC | 1 cut(s) | 411 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1916 |
| BpuEI | CTTGAG | 1 cut(s) | 1868 |
| BsaBI | GATNNNNATC | 3 cut(s) | 60, 1242, 1463 |
| BsaHI | GRCGYC | 1 cut(s) | 1143 |
| BsaJI | CCNNGG | 1 cut(s) | 143 |
| BsaWI | WCCGGW | 2 cut(s) | 1647, 1765 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1395, 1425 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 144, 781, 983 |
| Bse118I | RCCGGY | 1 cut(s) | 319 |
| Bse1I | ACTGG | 5 cut(s) | 138, 959, 1309, 1405, 1828 |
| Bse21I | CCTNAGG | 3 cut(s) | 636, 912, 1581 |
| Bse3DI | GCAATG | 2 cut(s) | 767, 1863 |
| Bse8I | GATNNNNATC | 3 cut(s) | 60, 1242, 1463 |
| BseAI | TCCGGA | 1 cut(s) | 1647 |
| BseBI | CCWGG | 2 cut(s) | 145, 1833 |
| BseDI | CCNNGG | 1 cut(s) | 143 |
| BseGI | GGATG | 5 cut(s) | 392, 808, 1598, 1750, 1751 |
| BseJI | GATNNNNATC | 3 cut(s) | 60, 1242, 1463 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 144, 781, 983 |
| BseMI | GCAATG | 2 cut(s) | 767, 1863 |
| BseMII | CTCAG | 9 cut(s) | 14, 197, 413, 425, 627, 903, 1572, 1930, 1995 |
| BseNI | ACTGG | 5 cut(s) | 138, 959, 1309, 1405, 1828 |
| BseRI | GAGGAG | 6 cut(s) | 235, 520, 523, 526, 529, 532 |
| BseSI | GKGCMC | 1 cut(s) | 675 |
| BseXI | GCAGC | 5 cut(s) | 162, 1120, 1472, 1475, 1540 |
| BseYI | CCCAGC | 2 cut(s) | 523, 1848 |
| BsgI | GTGCAG | 1 cut(s) | 1185 |
| Bsh1236I | CGCG | 3 cut(s) | 1017, 1846, 1857 |
| BshFI | GGCC | 2 cut(s) | 922, 1263 |
| BshNI | GGYRCC | 1 cut(s) | 1576 |
| BsiSI | CCGG | 3 cut(s) | 320, 1648, 1766 |
| BslFI | GGGAC | 3 cut(s) | 126, 953, 1893 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 144, 781, 983 |
| BsmFI | GGGAC | 3 cut(s) | 126, 953, 1893 |
| BsmI | GAATGC | 2 cut(s) | 1191, 1556 |
| BsnI | GGCC | 2 cut(s) | 922, 1263 |
| Bsp1286I | GDGCHC | 3 cut(s) | 675, 1117, 1286 |
| Bsp13I | TCCGGA | 1 cut(s) | 1647 |
| Bsp143I | GATC | 6 cut(s) | 16, 127, 610, 654, 1237, 1243 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1916 |
| BspACI | CCGC | 8 cut(s) | 105, 317, 726, 1256, 1594, 1755, 1844, 1933 |
| BspANI | GGCC | 2 cut(s) | 922, 1263 |
| BspCNI | CTCAG | 9 cut(s) | 15, 196, 412, 424, 628, 904, 1573, 1929, 1994 |
| BspEI | TCCGGA | 1 cut(s) | 1647 |
| BspFNI | CGCG | 3 cut(s) | 1017, 1846, 1857 |
| BspHI | TCATGA | 2 cut(s) | 627, 1677 |
| BspLI | GGNNCC | 2 cut(s) | 612, 1578 |
| BspPI | GGATC | 3 cut(s) | 122, 605, 618 |
| BspT107I | GGYRCC | 1 cut(s) | 1576 |
| BspTI | CTTAAG | 1 cut(s) | 1270 |
| BsrBI | CCGCTC | 2 cut(s) | 728, 1596 |
| BsrDI | GCAATG | 2 cut(s) | 767, 1863 |
| BsrFI | RCCGGY | 1 cut(s) | 319 |
| BsrI | ACTGG | 5 cut(s) | 138, 959, 1309, 1405, 1828 |
| BssAI | RCCGGY | 1 cut(s) | 319 |
| BssECI | CCNNGG | 1 cut(s) | 143 |
| BssMI | GATC | 6 cut(s) | 16, 127, 610, 654, 1237, 1243 |
| BssNAI | GTATAC | 1 cut(s) | 1426 |
| BssNI | GRCGYC | 1 cut(s) | 1143 |
| BssSI | CACGAG | 1 cut(s) | 195 |
| Bst1107I | GTATAC | 1 cut(s) | 1426 |
| Bst2BI | CACGAG | 1 cut(s) | 195 |
| Bst2UI | CCWGG | 2 cut(s) | 145, 1833 |
| Bst4CI | ACNGT | 2 cut(s) | 92, 1316 |
| Bst6I | CTCTTC | 3 cut(s) | 600, 1169, 1566 |
| BstACI | GRCGYC | 1 cut(s) | 1143 |
| BstAFI | CTTAAG | 1 cut(s) | 1270 |
| BstC8I | GCNNGC | 1 cut(s) | 1189 |
| BstDEI | CTNAG | 9 cut(s) | 23, 183, 399, 411, 636, 912, 1581, 1916, 1981 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 779 |
| BstF5I | GGATG | 5 cut(s) | 392, 808, 1598, 1750, 1751 |
| BstFNI | CGCG | 3 cut(s) | 1017, 1846, 1857 |
| BstHHI | GCGC | 4 cut(s) | 150, 1474, 1848, 1859 |
| BstKTI | GATC | 6 cut(s) | 19, 130, 613, 657, 1240, 1246 |
| BstMBI | GATC | 6 cut(s) | 16, 127, 610, 654, 1237, 1243 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 412, 1121, 1130, 1142, 1553, 1754, 1854, 1865 |
| BstNI | CCWGG | 2 cut(s) | 145, 1833 |
| BstNSI | RCATGY | 1 cut(s) | 1338 |
| BstSCI | CCNGG | 2 cut(s) | 143, 1831 |
| BstSFI | CTRYAG | 1 cut(s) | 1924 |
| BstSLI | GKGCMC | 1 cut(s) | 675 |
| BstUI | CGCG | 3 cut(s) | 1017, 1846, 1857 |
| BstV1I | GCAGC | 5 cut(s) | 162, 1120, 1472, 1475, 1540 |
| BstX2I | RGATCY | 1 cut(s) | 610 |
| BstYI | RGATCY | 1 cut(s) | 610 |
| BstZ17I | GTATAC | 1 cut(s) | 1426 |
| Bsu36I | CCTNAGG | 3 cut(s) | 636, 912, 1581 |
| BsuRI | GGCC | 2 cut(s) | 922, 1263 |
| BtgZI | GCGATG | 1 cut(s) | 1506 |
| BtsCI | GGATG | 5 cut(s) | 392, 808, 1598, 1750, 1751 |
| BtsIMutI | CAGTG | 2 cut(s) | 966, 1173 |
| Cac8I | GCNNGC | 1 cut(s) | 1189 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1488 |
| CciI | TCATGA | 2 cut(s) | 627, 1677 |
| CfoI | GCGC | 4 cut(s) | 150, 1474, 1848, 1859 |
| Cfr10I | RCCGGY | 1 cut(s) | 319 |
| Cfr13I | GGNCC | 1 cut(s) | 1307 |
| CseI | GACGC | 1 cut(s) | 1151 |
| Csp6I | GTAC | 3 cut(s) | 187, 966, 1577 |
| CviAII | CATG | 6 cut(s) | 6, 628, 1121, 1335, 1678, 1697 |
| CviQI | GTAC | 3 cut(s) | 187, 966, 1577 |
| DdeI | CTNAG | 9 cut(s) | 23, 183, 399, 411, 636, 912, 1581, 1916, 1981 |
| DpnI | GATC | 6 cut(s) | 18, 129, 612, 656, 1239, 1245 |
| DpnII | GATC | 6 cut(s) | 16, 127, 610, 654, 1237, 1243 |
| EaeI | YGGCCR | 2 cut(s) | 920, 1261 |
| Eam1104I | CTCTTC | 3 cut(s) | 600, 1169, 1566 |
| EarI | CTCTTC | 3 cut(s) | 600, 1169, 1566 |
| Eco24I | GRGCYC | 2 cut(s) | 1117, 1286 |
| Eco32I | GATATC | 3 cut(s) | 643, 1078, 1588 |
| Eco47I | GGWCC | 1 cut(s) | 1307 |
| Eco57I | CTGAAG | 2 cut(s) | 762, 1380 |
| Eco81I | CCTNAGG | 3 cut(s) | 636, 912, 1581 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 779 |
| EcoRII | CCWGG | 2 cut(s) | 143, 1831 |
| EcoRV | GATATC | 3 cut(s) | 643, 1078, 1588 |
| EcoT38I | GRGCYC | 2 cut(s) | 1117, 1286 |
| FaeI | CATG | 6 cut(s) | 9, 631, 1124, 1338, 1681, 1700 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 704, 736, 1333, 1365, 1375, 1407 |
| FaqI | GGGAC | 3 cut(s) | 126, 953, 1893 |
| FatI | CATG | 6 cut(s) | 5, 627, 1120, 1334, 1677, 1696 |
| FbaI | TGATCA | 2 cut(s) | 654, 1237 |
| FblI | GTMKAC | 3 cut(s) | 504, 1425, 1532 |
| Fnu4HI | GCNGC | 7 cut(s) | 151, 726, 1134, 1486, 1489, 1554, 1933 |
| FokI | GGATG | 5 cut(s) | 379, 815, 1585, 1738, 1757 |
| FriOI | GRGCYC | 2 cut(s) | 1117, 1286 |
| Fsp4HI | GCNGC | 7 cut(s) | 151, 726, 1134, 1486, 1489, 1554, 1933 |
| FspBI | CTAG | 1 cut(s) | 1809 |
| GlaI | GCGC | 4 cut(s) | 149, 1473, 1847, 1858 |
| GluI | GCNGC | 7 cut(s) | 151, 726, 1134, 1486, 1489, 1554, 1933 |
| GsaI | CCCAGC | 2 cut(s) | 527, 1852 |
| GsuI | CTGGAG | 1 cut(s) | 1422 |
| HaeIII | GGCC | 2 cut(s) | 922, 1263 |
| HapII | CCGG | 3 cut(s) | 320, 1648, 1766 |
| HgaI | GACGC | 1 cut(s) | 1151 |
| HhaI | GCGC | 4 cut(s) | 150, 1474, 1848, 1859 |
| Hin1I | GRCGYC | 1 cut(s) | 1143 |
| Hin1II | CATG | 6 cut(s) | 9, 631, 1124, 1338, 1681, 1700 |
| Hin6I | GCGC | 4 cut(s) | 148, 1472, 1846, 1857 |
| HinP1I | GCGC | 4 cut(s) | 148, 1472, 1846, 1857 |
| HincII | GTYRAC | 2 cut(s) | 563, 1533 |
| HindII | GTYRAC | 2 cut(s) | 563, 1533 |
| HindIII | AAGCTT | 2 cut(s) | 1232, 1507 |
| HpaII | CCGG | 3 cut(s) | 320, 1648, 1766 |
| HphI | GGTGA | 5 cut(s) | 225, 1278, 1525, 1531, 1672 |
| Hpy166II | GTNNAC | 5 cut(s) | 505, 563, 1426, 1533, 1829 |
| Hpy8I | GTNNAC | 5 cut(s) | 505, 563, 1426, 1533, 1829 |
| HpyAV | CCTTC | 9 cut(s) | 41, 122, 775, 1313, 1355, 1359, 1401, 1510, 1641 |
| HpyCH4III | ACNGT | 2 cut(s) | 92, 1316 |
| HpyCH4IV | ACGT | 1 cut(s) | 1249 |
| HpyCH4V | TGCA | 8 cut(s) | 953, 1124, 1136, 1202, 1334, 1376, 1556, 1868 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 412, 1121, 1130, 1142, 1553, 1754, 1854, 1865 |
| HpyF3I | CTNAG | 9 cut(s) | 23, 183, 399, 411, 636, 912, 1581, 1916, 1981 |
| HpySE526I | ACGT | 1 cut(s) | 1249 |
| Hsp92I | GRCGYC | 1 cut(s) | 1143 |
| Hsp92II | CATG | 6 cut(s) | 9, 631, 1124, 1338, 1681, 1700 |
| HspAI | GCGC | 4 cut(s) | 148, 1472, 1846, 1857 |
| Kpn2I | TCCGGA | 1 cut(s) | 1647 |
| KpnI | GGTACC | 1 cut(s) | 1580 |
| Ksp22I | TGATCA | 2 cut(s) | 654, 1237 |
| Kzo9I | GATC | 6 cut(s) | 16, 127, 610, 654, 1237, 1243 |
| LmnI | GCTCC | 3 cut(s) | 498, 757, 1008 |
| Lsp1109I | GCAGC | 5 cut(s) | 162, 1120, 1472, 1475, 1540 |
| LweI | GCATC | 4 cut(s) | 17, 296, 1145, 1735 |
| MaeI | CTAG | 1 cut(s) | 1809 |
| MaeII | ACGT | 1 cut(s) | 1249 |
| MaeIII | GTNAC | 5 cut(s) | 322, 553, 787, 1300, 1819 |
| MalI | GATC | 6 cut(s) | 18, 129, 612, 656, 1239, 1245 |
| MbiI | CCGCTC | 2 cut(s) | 728, 1596 |
| MboI | GATC | 6 cut(s) | 16, 127, 610, 654, 1237, 1243 |
| MflI | RGATCY | 1 cut(s) | 610 |
| MhlI | GDGCHC | 3 cut(s) | 675, 1117, 1286 |
| MlsI | TGGCCA | 1 cut(s) | 1263 |
| MluI | ACGCGT | 1 cut(s) | 1015 |
| MluNI | TGGCCA | 1 cut(s) | 1263 |
| MlyI | GAGTC | 6 cut(s) | 1172, 1538, 1622, 1875, 1899, 1973 |
| MmeI | TCCRAC | 3 cut(s) | 780, 1086, 1696 |
| Mox20I | TGGCCA | 1 cut(s) | 1263 |
| MroI | TCCGGA | 1 cut(s) | 1647 |
| MroXI | GAANNNNTTC | 1 cut(s) | 70 |
| MscI | TGGCCA | 1 cut(s) | 1263 |
| MseI | TTAA | 7 cut(s) | 207, 378, 981, 1128, 1271, 1340, 1382 |
| Msp20I | TGGCCA | 1 cut(s) | 1263 |
| MspA1I | CMGCKG | 2 cut(s) | 107, 1485 |
| MspCI | CTTAAG | 1 cut(s) | 1270 |
| MspI | CCGG | 3 cut(s) | 320, 1648, 1766 |
| MspR9I | CCNGG | 2 cut(s) | 145, 1833 |
| Mva1269I | GAATGC | 2 cut(s) | 1191, 1556 |
| MvaI | CCWGG | 2 cut(s) | 145, 1833 |
| MvnI | CGCG | 3 cut(s) | 1017, 1846, 1857 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 412, 1121, 1130, 1142, 1553, 1754, 1854, 1865 |
| NdeII | GATC | 6 cut(s) | 16, 127, 610, 654, 1237, 1243 |
| NlaIII | CATG | 6 cut(s) | 9, 631, 1124, 1338, 1681, 1700 |
| NlaIV | GGNNCC | 2 cut(s) | 612, 1578 |
| NmuCI | GTSAC | 2 cut(s) | 322, 787 |
| NspI | RCATGY | 1 cut(s) | 1338 |
| PagI | TCATGA | 2 cut(s) | 627, 1677 |
| PctI | GAATGC | 2 cut(s) | 1191, 1556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 70 |
| PfeI | GAWTC | 7 cut(s) | 631, 685, 902, 1276, 1325, 1459, 1522 |
| PflFI | GACNNNGTC | 1 cut(s) | 944 |
| PkrI | GCNGC | 7 cut(s) | 152, 727, 1135, 1487, 1490, 1555, 1934 |
| PleI | GAGTC | 6 cut(s) | 1172, 1537, 1621, 1875, 1899, 1973 |
| PpsI | GAGTC | 6 cut(s) | 1172, 1537, 1621, 1875, 1899, 1973 |
| PsiI | TTATAA | 3 cut(s) | 252, 819, 846 |
| Psp1406I | AACGTT | 1 cut(s) | 1249 |
| Psp6I | CCWGG | 2 cut(s) | 143, 1831 |
| PspFI | CCCAGC | 2 cut(s) | 523, 1848 |
| PspGI | CCWGG | 2 cut(s) | 143, 1831 |
| PspN4I | GGNNCC | 2 cut(s) | 612, 1578 |
| PspPI | GGNCC | 1 cut(s) | 1307 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1488 |
| PsuI | RGATCY | 1 cut(s) | 610 |
| PsyI | GACNNNGTC | 1 cut(s) | 944 |
| PvuII | CAGCTG | 1 cut(s) | 1485 |
| RsaI | GTAC | 3 cut(s) | 188, 967, 1578 |
| RsaNI | GTAC | 3 cut(s) | 187, 966, 1577 |
| SalI | GTCGAC | 1 cut(s) | 1531 |
| SaqAI | TTAA | 7 cut(s) | 207, 378, 981, 1128, 1271, 1340, 1382 |
| SatI | GCNGC | 7 cut(s) | 151, 726, 1134, 1486, 1489, 1554, 1933 |
| Sau3AI | GATC | 6 cut(s) | 16, 127, 610, 654, 1237, 1243 |
| Sau96I | GGNCC | 1 cut(s) | 1307 |
| ScaI | AGTACT | 1 cut(s) | 188 |
| SchI | GAGTC | 6 cut(s) | 1172, 1538, 1622, 1875, 1899, 1973 |
| ScrFI | CCNGG | 2 cut(s) | 145, 1833 |
| SduI | GDGCHC | 3 cut(s) | 675, 1117, 1286 |
| SfaNI | GCATC | 4 cut(s) | 17, 296, 1145, 1735 |
| SfcI | CTRYAG | 1 cut(s) | 1924 |
| SinI | GGWCC | 1 cut(s) | 1307 |
| SmlI | CTYRAG | 2 cut(s) | 1270, 1883 |
| SmoI | CTYRAG | 2 cut(s) | 1270, 1883 |
| SpeI | ACTAGT | 1 cut(s) | 1808 |
| SsiI | CCGC | 8 cut(s) | 105, 317, 726, 1256, 1594, 1755, 1844, 1933 |
| SspI | AATATT | 1 cut(s) | 296 |
| SspMI | CTAG | 1 cut(s) | 1809 |
| StyD4I | CCNGG | 2 cut(s) | 143, 1831 |
| TaaI | ACNGT | 2 cut(s) | 92, 1316 |
| TaiI | ACGT | 1 cut(s) | 1252 |
| TaqI | TCGA | 4 cut(s) | 64, 1532, 1670, 1690 |
| TatI | WGTACW | 1 cut(s) | 186 |
| TauI | GCSGC | 2 cut(s) | 728, 1935 |
| TfiI | GAWTC | 7 cut(s) | 631, 685, 902, 1276, 1325, 1459, 1522 |
| Tru1I | TTAA | 7 cut(s) | 207, 378, 981, 1128, 1271, 1340, 1382 |
| Tru9I | TTAA | 7 cut(s) | 207, 378, 981, 1128, 1271, 1340, 1382 |
| TscAI | CASTG | 2 cut(s) | 966, 1180 |
| TseFI | GTSAC | 2 cut(s) | 322, 787 |
| TseI | GCWGC | 5 cut(s) | 150, 1133, 1485, 1488, 1553 |
| Tsp45I | GTSAC | 2 cut(s) | 322, 787 |
| TspGWI | ACGGA | 1 cut(s) | 1550 |
| TspRI | CASTG | 2 cut(s) | 966, 1180 |
| Tth111I | GACNNNGTC | 1 cut(s) | 944 |
| Vha464I | CTTAAG | 1 cut(s) | 1270 |
| VpaK11BI | GGWCC | 1 cut(s) | 1307 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 779 |
| XapI | RAATTY | 2 cut(s) | 822, 1028 |
| XceI | RCATGY | 1 cut(s) | 1338 |
| XmiI | GTMKAC | 3 cut(s) | 504, 1425, 1532 |
| XmnI | GAANNNNTTC | 1 cut(s) | 70 |
| XspI | CTAG | 1 cut(s) | 1809 |
| ZrmI | AGTACT | 1 cut(s) | 188 |