Rw4G037380

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000595
Physical Location & Seq
Reverse (-)
64010551 .. 64013495
2945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G037380.1

Sequence Viewer

Length: 1290 bp
ATGGTCGTCATTGGCCGGTCAGTGCTTTTGGAAAGAAGATGGAACCTTCAGCCTAATCTATATGACTCTCTCAATCTCTTAATGGTCACTCACTGGCTCATCCATCTCAGGAGGACAATATGGATCAAGCACCACCTAAAGTCCATTGTCTCCCTTAACCTATACGAACTACTTTGCTGCTCTTTATATGCTGAGGAAGTCTACTTGGAGAAATGGAAAGATTATCAAATGTTGGAAGTGACATTGAACTTGCAAGAAGCAATTATAAAGGCTAAAAAGAAGGTTGAAAAAATCTTTGTAAAATTGAAGTTAGATTCAGTTCCTGAGAGACGCCCATTCCTTTTATCAAGGGATTTTGTCTATGCAAGACCTTCGGGTAGGGATGTTCAGCCATTTGAGGGCATTCTCTACCGTGTGGTGAAGAGCAGTCATATAGTAGTTGATTTCGGACATGACTTTCTTTATCAGCATCATCCGAAACGCACATATGACATCAGCTTCTCATTTAACAGACTTTGTTTTAAAAGAGCTCATGCTGCAGTTCAAGCTGCATCAAATCCTTTGTTCCAGAACTACATCTTTCCTGATTGTGTTCCAGGAAAGATCATCATTTCCAATGATTCCACACCAAAGGCTGCAGTTAGACAGATTTTAGGCTTTTGTGGCCCGCCACCCTATATTATAGAGGGCCAACGCTCCGTGATTCGTACAGGAAAAACTGAATCTAAACCGTATAAACTATCAAAAACAGGAGAGGTTGTTCGAGAAGCGGCATTGCAAATCTATAAAAGCTCTCCAGATGATCGTATTCTCATATGTGCCCCCTTAAACAGCACATGCGACGAGCTGATGATTAGTTTGAAGAAAGTGATTCCAGAGTGTGACATGTATCGAACCAATGCTGCATTTCGAGAGGTAGATGAGGTACCTATTGAGATTCTCCTCTCATGTGATCATGACGGCGAATGTTTTTCCTGTCCTCCACTCGCAGAACTCCAGAGGTTCAGGCTGATCTTCTCCACATTTGTTACTAGCTTTCGGCTACACAATGAAGGCGTCACTGCTGGACATTTCAGCCATATTTTTCTGGTGGATGCTGCTTTGGCTACTGAGCCAGAGACAATGATAGCTCTGGCTAATTTTGCTAATAAGAACACAGCTGTTATAGTAACAGGTTCAGCCAATCATCAACCAAATCAGGTGCGCTCTGGTATGGCCAGGACCAAAGGATTGAAGACATCATACTTTGAAAGGCTCAGTAAGATGAGAACAACATCAGATGACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

429

Amino Acids

49.06

Weight (kDa)

8.98

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOV-10_beta-barrel PF21634 87 - 167 3.7e-08 Helicase MOV-10, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 266
Acc65I GGTACC 1 cut(s) 925
AccB1I GGYRCC 1 cut(s) 925
AccI GTMKAC 1 cut(s) 201
AciI CCGC 2 cut(s) 668, 770
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 2 cut(s) 13, 1215
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 2 cut(s) 331, 1056
AfaI GTAC 2 cut(s) 709, 927
AfiI CCNNNNNNNGG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 885
AgsI TTSAA 7 cut(s) 247, 287, 307, 545, 862, 1234, 1250
AjnI CCWGG 2 cut(s) 595, 1217
AloI GAACNNNNNNTCC 2 cut(s) 744, 776
AluBI AGCT 8 cut(s) 498, 530, 548, 792, 847, 1035, 1130, 1160
AluI AGCT 8 cut(s) 498, 530, 548, 792, 847, 1035, 1130, 1160
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 3 cut(s) 154, 322, 1112
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 323
AoxI GGCC 4 cut(s) 13, 664, 688, 1215
ApeKI GCWGC 6 cut(s) 177, 536, 548, 635, 902, 1097
Asp718I GGTACC 1 cut(s) 925
AspLEI GCGC 1 cut(s) 1206
AspS9I GGNCC 3 cut(s) 665, 688, 1221
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 1 cut(s) 1221
BaeGI GKGCMC 1 cut(s) 823
BalI TGGCCA 1 cut(s) 1217
BanI GGYRCC 1 cut(s) 925
BanII GRGCYC 1 cut(s) 532
BarI GAAGNNNNNNTAC 2 cut(s) 1226, 1258
BbsI GAAGAC 1 cut(s) 1241
Bbv12I GWGCWC 1 cut(s) 532
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 6 cut(s) 164, 523, 535, 622, 889, 1084
BccI CCATC 2 cut(s) 33, 111
BceAI ACGGC 1 cut(s) 976
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciT130I CCWGG 2 cut(s) 597, 1219
BclI TGATCA 1 cut(s) 952
BcoDI GTCTC 3 cut(s) 154, 322, 1112
BfaI CTAG 1 cut(s) 1032
BfmI CTRYAG 2 cut(s) 537, 636
BisI GCNGC 7 cut(s) 178, 537, 549, 636, 771, 903, 1098
BlsI GCNGC 7 cut(s) 179, 538, 550, 637, 772, 904, 1099
Bme1390I CCNGG 2 cut(s) 597, 1219
Bme18I GGWCC 1 cut(s) 1221
BmgT120I GGNCC 3 cut(s) 665, 688, 1221
BmiI GGNNCC 2 cut(s) 44, 927
BmrFI CCNGG 2 cut(s) 597, 1219
BmsI GCATC 3 cut(s) 478, 560, 1084
BpiI GAAGAC 1 cut(s) 1241
BpmI CTGGAG 2 cut(s) 780, 980
Bpu10I CCTNAGC 1 cut(s) 192
BsaHI GRCGYC 2 cut(s) 331, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 773
BseBI CCWGG 2 cut(s) 597, 1219
BseGI GGATG 4 cut(s) 99, 388, 472, 1099
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 1 cut(s) 773
BseMII CTCAG 5 cut(s) 121, 183, 315, 1101, 1270
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 932
BseSI GKGCMC 1 cut(s) 823
BseXI GCAGC 6 cut(s) 164, 523, 535, 622, 889, 1084
BshFI GGCC 4 cut(s) 15, 666, 690, 1217
BshNI GGYRCC 1 cut(s) 925
BsiHKAI GWGCWC 1 cut(s) 532
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 3 cut(s) 154, 322, 1112
BsmBI CGTCTC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 4 cut(s) 15, 666, 690, 1217
Bsp1286I GDGCHC 2 cut(s) 532, 823
Bsp143I GATC 5 cut(s) 123, 603, 802, 952, 1011
BspACI CCGC 2 cut(s) 668, 770
BspANI GGCC 4 cut(s) 15, 666, 690, 1217
BspCNI CTCAG 5 cut(s) 120, 184, 316, 1102, 1269
BspHI TCATGA 1 cut(s) 955
BspLI GGNNCC 2 cut(s) 44, 927
BspMAI CTGCAG 2 cut(s) 541, 640
BspPI GGATC 1 cut(s) 131
BspQI GCTCTTC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 925
BsrDI GCAATG 1 cut(s) 773
BsrFI RCCGGY 1 cut(s) 15
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 15
BssMI GATC 5 cut(s) 123, 603, 802, 952, 1011
BssNI GRCGYC 2 cut(s) 331, 1056
Bst2UI CCWGG 2 cut(s) 597, 1219
Bst4CI ACNGT 2 cut(s) 413, 732
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 2 cut(s) 331, 1056
BstC8I GCNNGC 1 cut(s) 668
BstDEI CTNAG 5 cut(s) 107, 192, 324, 1110, 1256
BstF5I GGATG 4 cut(s) 99, 388, 472, 1099
BstHHI GCGC 1 cut(s) 1206
BstKTI GATC 5 cut(s) 126, 606, 805, 955, 1014
BstMAI GTCTC 3 cut(s) 154, 322, 1112
BstMBI GATC 5 cut(s) 123, 603, 802, 952, 1011
BstMWI GCNNNNNNNGC 5 cut(s) 536, 545, 663, 1103, 1142
BstNI CCWGG 2 cut(s) 597, 1219
BstNSI RCATGY 2 cut(s) 840, 889
BstSCI CCNGG 2 cut(s) 595, 1217
BstSFI CTRYAG 2 cut(s) 537, 636
BstSLI GKGCMC 1 cut(s) 823
BstV1I GCAGC 6 cut(s) 164, 523, 535, 622, 889, 1084
BstV2I GAAGAC 1 cut(s) 1241
BsuRI GGCC 4 cut(s) 15, 666, 690, 1217
BtsCI GGATG 4 cut(s) 99, 388, 472, 1099
BtsI GCAGTG 1 cut(s) 1059
BtsIMutI CAGTG 3 cut(s) 27, 91, 1059
Cac8I GCNNGC 1 cut(s) 668
CaiI CAGNNNCTG 1 cut(s) 323
CciI TCATGA 1 cut(s) 955
CfoI GCGC 1 cut(s) 1206
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 3 cut(s) 665, 688, 1221
CseI GACGC 2 cut(s) 339, 1045
Csp6I GTAC 2 cut(s) 708, 926
CviAII CATG 6 cut(s) 452, 533, 837, 886, 948, 956
CviQI GTAC 2 cut(s) 708, 926
DdeI CTNAG 5 cut(s) 107, 192, 324, 1110, 1256
DpnI GATC 5 cut(s) 125, 605, 804, 954, 1013
DpnII GATC 5 cut(s) 123, 603, 802, 952, 1011
DraI TTTAAA 1 cut(s) 523
EaeI YGGCCR 2 cut(s) 13, 1215
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Ecl136II GAGCTC 1 cut(s) 530
Eco24I GRGCYC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 1221
Eco53kI GAGCTC 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 595, 1217
EcoT38I GRGCYC 1 cut(s) 532
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 6 cut(s) 455, 536, 840, 889, 951, 959
FatI CATG 6 cut(s) 451, 532, 836, 885, 947, 955
FauI CCCGC 1 cut(s) 675
FauNDI CATATG 2 cut(s) 487, 815
FbaI TGATCA 1 cut(s) 952
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 7 cut(s) 178, 537, 549, 636, 771, 903, 1098
FokI GGATG 4 cut(s) 86, 395, 459, 1106
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 7 cut(s) 178, 537, 549, 636, 771, 903, 1098
FspBI CTAG 1 cut(s) 1032
GlaI GCGC 1 cut(s) 1205
GluI GCNGC 7 cut(s) 178, 537, 549, 636, 771, 903, 1098
GsuI CTGGAG 2 cut(s) 780, 980
HaeIII GGCC 4 cut(s) 15, 666, 690, 1217
HapII CCGG 1 cut(s) 16
HgaI GACGC 2 cut(s) 339, 1045
HhaI GCGC 1 cut(s) 1206
Hin1I GRCGYC 2 cut(s) 331, 1056
Hin1II CATG 6 cut(s) 455, 536, 840, 889, 951, 959
Hin6I GCGC 1 cut(s) 1204
HinP1I GCGC 1 cut(s) 1204
HinfI GANTC 7 cut(s) 65, 314, 620, 703, 722, 871, 937
HpaII CCGG 1 cut(s) 16
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 3 cut(s) 449, 477, 1279
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 845
HpyAV CCTTC 4 cut(s) 56, 274, 381, 1046
HpyCH4III ACNGT 2 cut(s) 413, 732
HpyCH4V TGCA 7 cut(s) 253, 365, 539, 551, 638, 778, 905
HpyF10VI GCNNNNNNNGC 5 cut(s) 536, 545, 663, 1103, 1142
HpyF3I CTNAG 5 cut(s) 107, 192, 324, 1110, 1256
Hsp92I GRCGYC 2 cut(s) 331, 1056
Hsp92II CATG 6 cut(s) 455, 536, 840, 889, 951, 959
HspAI GCGC 1 cut(s) 1204
KpnI GGTACC 1 cut(s) 929
Ksp22I TGATCA 1 cut(s) 952
Kzo9I GATC 5 cut(s) 123, 603, 802, 952, 1011
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 1 cut(s) 701
Lsp1109I GCAGC 6 cut(s) 164, 523, 535, 622, 889, 1084
LweI GCATC 3 cut(s) 478, 560, 1084
MaeI CTAG 1 cut(s) 1032
MaeIII GTNAC 6 cut(s) 85, 238, 881, 1027, 1057, 1168
MalI GATC 5 cut(s) 125, 605, 804, 954, 1013
MboI GATC 5 cut(s) 123, 603, 802, 952, 1011
MboII GAAGA 5 cut(s) 48, 433, 874, 1006, 1246
MhlI GDGCHC 2 cut(s) 532, 823
MlsI TGGCCA 1 cut(s) 1217
MluCI AATT 3 cut(s) 261, 302, 1138
MluNI TGGCCA 1 cut(s) 1217
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 1217
MscI TGGCCA 1 cut(s) 1217
MseI TTAA 5 cut(s) 80, 156, 507, 522, 827
Msp20I TGGCCA 1 cut(s) 1217
MspA1I CMGCKG 1 cut(s) 1160
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 2 cut(s) 597, 1219
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 2 cut(s) 597, 1219
MwoI GCNNNNNNNGC 5 cut(s) 536, 545, 663, 1103, 1142
NdeI CATATG 2 cut(s) 487, 815
NdeII GATC 5 cut(s) 123, 603, 802, 952, 1011
NlaIII CATG 6 cut(s) 455, 536, 840, 889, 951, 959
NlaIV GGNNCC 2 cut(s) 44, 927
NmuCI GTSAC 4 cut(s) 85, 238, 881, 1057
NspI RCATGY 2 cut(s) 840, 889
PagI TCATGA 1 cut(s) 955
PciI ACATGT 1 cut(s) 885
PciSI GCTCTTC 1 cut(s) 416
PctI GAATGC 1 cut(s) 402
PfeI GAWTC 6 cut(s) 314, 620, 703, 722, 871, 937
PfoI TCCNGGA 1 cut(s) 595
PkrI GCNGC 7 cut(s) 179, 538, 550, 637, 772, 904, 1099
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PscI ACATGT 1 cut(s) 885
PsiI TTATAA 1 cut(s) 266
Psp124BI GAGCTC 1 cut(s) 532
Psp6I CCWGG 2 cut(s) 595, 1217
PspGI CCWGG 2 cut(s) 595, 1217
PspN4I GGNNCC 2 cut(s) 44, 927
PspPI GGNCC 3 cut(s) 665, 688, 1221
PstI CTGCAG 2 cut(s) 541, 640
PstNI CAGNNNCTG 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 1160
RsaI GTAC 2 cut(s) 709, 927
RsaNI GTAC 2 cut(s) 708, 926
SacI GAGCTC 1 cut(s) 532
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 5 cut(s) 80, 156, 507, 522, 827
SatI GCNGC 7 cut(s) 178, 537, 549, 636, 771, 903, 1098
Sau3AI GATC 5 cut(s) 123, 603, 802, 952, 1011
Sau96I GGNCC 3 cut(s) 665, 688, 1221
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 597, 1219
SduI GDGCHC 2 cut(s) 532, 823
SfaNI GCATC 3 cut(s) 478, 560, 1084
SfcI CTRYAG 2 cut(s) 537, 636
SinI GGWCC 1 cut(s) 1221
Sse9I AATT 3 cut(s) 261, 302, 1138
SsiI CCGC 2 cut(s) 668, 770
SspMI CTAG 1 cut(s) 1032
SstI GAGCTC 1 cut(s) 532
StyD4I CCNGG 2 cut(s) 595, 1217
TaaI ACNGT 2 cut(s) 413, 732
TaqI TCGA 3 cut(s) 763, 892, 910
TasI AATT 3 cut(s) 261, 302, 1138
TauI GCSGC 1 cut(s) 773
TfiI GAWTC 6 cut(s) 314, 620, 703, 722, 871, 937
Tru1I TTAA 5 cut(s) 80, 156, 507, 522, 827
Tru9I TTAA 5 cut(s) 80, 156, 507, 522, 827
TscAI CASTG 3 cut(s) 27, 98, 1066
TseFI GTSAC 4 cut(s) 85, 238, 881, 1057
TseI GCWGC 6 cut(s) 177, 536, 548, 635, 902, 1097
Tsp45I GTSAC 4 cut(s) 85, 238, 881, 1057
TspDTI ATGAA 1 cut(s) 1065
TspGWI ACGGA 1 cut(s) 688
TspRI CASTG 3 cut(s) 27, 98, 1066
VpaK11BI GGWCC 1 cut(s) 1221
XceI RCATGY 2 cut(s) 840, 889
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 1 cut(s) 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.