RNA helicase SDE3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOV-10_beta-barrel | PF21634 | 260 - 336 | 6.6e-10 | Helicase MOV-10, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 735, 762 |
| Acc65I | GGTACC | 1 cut(s) | 1456 |
| AccB1I | GGYRCC | 1 cut(s) | 1456 |
| AccBSI | CCGCTC | 2 cut(s) | 644, 1726 |
| AccI | GTMKAC | 2 cut(s) | 1305, 1412 |
| AccII | CGCG | 2 cut(s) | 939, 1737 |
| AccIII | TCCGGA | 1 cut(s) | 1231 |
| AciI | CCGC | 3 cut(s) | 36, 642, 1724 |
| AclI | AACGTT | 1 cut(s) | 1171 |
| AclWI | GGATC | 1 cut(s) | 534 |
| AcoI | YGGCCR | 1 cut(s) | 836 |
| AcsI | RAATTY | 1 cut(s) | 950 |
| AcuI | CTGAAG | 1 cut(s) | 678 |
| AfaI | GTAC | 2 cut(s) | 1458, 1862 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 697, 748, 905 |
| AflII | CTTAAG | 1 cut(s) | 1192 |
| AgsI | TTSAA | 8 cut(s) | 521, 697, 729, 950, 1015, 1030, 1275, 1781 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1421, 1453 |
| Alw21I | GWGCWC | 1 cut(s) | 1354 |
| Alw44I | GTGCAC | 1 cut(s) | 1350 |
| AlwI | GGATC | 1 cut(s) | 534 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1368 |
| Aor13HI | TCCGGA | 1 cut(s) | 1231 |
| AoxI | GGCC | 4 cut(s) | 836, 907, 1683, 1799 |
| ApaLI | GTGCAC | 1 cut(s) | 1350 |
| ApeKI | GCWGC | 5 cut(s) | 1055, 1365, 1368, 1433, 1592 |
| ApoI | RAATTY | 1 cut(s) | 950 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 782, 814 |
| Asp718I | GGTACC | 1 cut(s) | 1456 |
| AspLEI | GCGC | 2 cut(s) | 589, 1739 |
| AspS9I | GGNCC | 3 cut(s) | 862, 907, 1229 |
| AsuC2I | CCSGG | 1 cut(s) | 1529 |
| AsuHPI | GGTGA | 5 cut(s) | 1200, 1317, 1405, 1411, 1552 |
| AvaII | GGWCC | 2 cut(s) | 862, 1229 |
| AxyI | CCTNAGG | 2 cut(s) | 552, 1461 |
| BaeGI | GKGCMC | 2 cut(s) | 416, 1354 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1316, 1349 |
| BanI | GGYRCC | 1 cut(s) | 1456 |
| BanII | GRGCYC | 3 cut(s) | 900, 1039, 1208 |
| BauI | CACGAG | 1 cut(s) | 1104 |
| BbsI | GAAGAC | 1 cut(s) | 795 |
| Bbv12I | GWGCWC | 1 cut(s) | 1354 |
| BbvI | GCAGC | 5 cut(s) | 1042, 1352, 1355, 1420, 1579 |
| BccI | CCATC | 3 cut(s) | 73, 79, 394 |
| BceAI | ACGGC | 1 cut(s) | 851 |
| BclI | TGATCA | 2 cut(s) | 570, 1159 |
| BcnI | CCSGG | 1 cut(s) | 1529 |
| BfaI | CTAG | 1 cut(s) | 1838 |
| BfmI | CTRYAG | 1 cut(s) | 1176 |
| BfrI | CTTAAG | 1 cut(s) | 1192 |
| BisI | GCNGC | 6 cut(s) | 642, 1056, 1366, 1369, 1434, 1593 |
| BlsI | GCNGC | 6 cut(s) | 643, 1057, 1367, 1370, 1435, 1594 |
| Bme1390I | CCNGG | 1 cut(s) | 1529 |
| Bme18I | GGWCC | 2 cut(s) | 862, 1229 |
| BmgT120I | GGNCC | 3 cut(s) | 862, 907, 1229 |
| BmiI | GGNNCC | 1 cut(s) | 1458 |
| BmrFI | CCNGG | 1 cut(s) | 1529 |
| BmsI | GCATC | 3 cut(s) | 1054, 1067, 1615 |
| BpiI | GAAGAC | 1 cut(s) | 795 |
| BpmI | CTGGAG | 5 cut(s) | 102, 177, 255, 333, 1302 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1796 |
| BpuEI | CTTGAG | 1 cut(s) | 1748 |
| BpuMI | CCSGG | 1 cut(s) | 1529 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1164 |
| BsaWI | WCCGGW | 2 cut(s) | 741, 1231 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1275, 1305 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 697, 748, 905 |
| Bse1I | ACTGG | 7 cut(s) | 194, 272, 350, 875, 1231, 1285, 1708 |
| Bse21I | CCTNAGG | 2 cut(s) | 552, 1461 |
| Bse3DI | GCAATG | 1 cut(s) | 1743 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1164 |
| BseAI | TCCGGA | 1 cut(s) | 1231 |
| BseGI | GGATG | 9 cut(s) | 25, 161, 236, 314, 724, 964, 1467, 1478, 1630 |
| BseJI | GATNNNNATC | 1 cut(s) | 1164 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 697, 748, 905 |
| BseMI | GCAATG | 1 cut(s) | 1743 |
| BseMII | CTCAG | 5 cut(s) | 543, 819, 885, 1452, 1810 |
| BseNI | ACTGG | 7 cut(s) | 194, 272, 350, 875, 1231, 1285, 1708 |
| BseRI | GAGGAG | 3 cut(s) | 439, 442, 445 |
| BseSI | GKGCMC | 2 cut(s) | 416, 1354 |
| BseXI | GCAGC | 5 cut(s) | 1042, 1352, 1355, 1420, 1579 |
| BseYI | CCCAGC | 7 cut(s) | 166, 211, 241, 289, 319, 367, 442 |
| Bsh1236I | CGCG | 2 cut(s) | 939, 1737 |
| BshFI | GGCC | 4 cut(s) | 838, 909, 1685, 1801 |
| BshNI | GGYRCC | 1 cut(s) | 1456 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1354 |
| BsiSI | CCGG | 4 cut(s) | 742, 1232, 1528, 1646 |
| BslFI | GGGAC | 2 cut(s) | 869, 1773 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 697, 748, 905 |
| BsmFI | GGGAC | 2 cut(s) | 869, 1773 |
| BsmI | GAATGC | 2 cut(s) | 1338, 1436 |
| BsnI | GGCC | 4 cut(s) | 838, 909, 1685, 1801 |
| Bsp1286I | GDGCHC | 5 cut(s) | 416, 900, 1039, 1208, 1354 |
| Bsp13I | TCCGGA | 1 cut(s) | 1231 |
| Bsp143I | GATC | 4 cut(s) | 526, 570, 1159, 1165 |
| BspACI | CCGC | 3 cut(s) | 36, 642, 1724 |
| BspANI | GGCC | 4 cut(s) | 838, 909, 1685, 1801 |
| BspCNI | CTCAG | 5 cut(s) | 544, 820, 886, 1453, 1809 |
| BspEI | TCCGGA | 1 cut(s) | 1231 |
| BspFNI | CGCG | 2 cut(s) | 939, 1737 |
| BspHI | TCATGA | 1 cut(s) | 543 |
| BspLI | GGNNCC | 1 cut(s) | 1458 |
| BspMAI | CTGCAG | 1 cut(s) | 1180 |
| BspPI | GGATC | 1 cut(s) | 534 |
| BspT107I | GGYRCC | 1 cut(s) | 1456 |
| BspTI | CTTAAG | 1 cut(s) | 1192 |
| BsrBI | CCGCTC | 2 cut(s) | 644, 1726 |
| BsrDI | GCAATG | 1 cut(s) | 1743 |
| BsrI | ACTGG | 7 cut(s) | 194, 272, 350, 875, 1231, 1285, 1708 |
| BssMI | GATC | 4 cut(s) | 526, 570, 1159, 1165 |
| BssNAI | GTATAC | 1 cut(s) | 1306 |
| BssSI | CACGAG | 1 cut(s) | 1104 |
| Bst1107I | GTATAC | 1 cut(s) | 1306 |
| Bst2BI | CACGAG | 1 cut(s) | 1104 |
| Bst4CI | ACNGT | 4 cut(s) | 1097, 1238, 1693, 1817 |
| Bst6I | CTCTTC | 2 cut(s) | 491, 1091 |
| BstAFI | CTTAAG | 1 cut(s) | 1192 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1064 |
| BstC8I | GCNNGC | 3 cut(s) | 124, 1111, 1793 |
| BstDEI | CTNAG | 7 cut(s) | 225, 303, 552, 828, 894, 1461, 1796 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 695 |
| BstF5I | GGATG | 9 cut(s) | 25, 161, 236, 314, 724, 964, 1467, 1478, 1630 |
| BstFNI | CGCG | 2 cut(s) | 939, 1737 |
| BstHHI | GCGC | 2 cut(s) | 589, 1739 |
| BstKTI | GATC | 4 cut(s) | 529, 573, 1162, 1168 |
| BstMBI | GATC | 4 cut(s) | 526, 570, 1159, 1165 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1043, 1052, 1064, 1433, 1682, 1745 |
| BstSCI | CCNGG | 1 cut(s) | 1527 |
| BstSFI | CTRYAG | 1 cut(s) | 1176 |
| BstSLI | GKGCMC | 2 cut(s) | 416, 1354 |
| BstUI | CGCG | 2 cut(s) | 939, 1737 |
| BstV1I | GCAGC | 5 cut(s) | 1042, 1352, 1355, 1420, 1579 |
| BstV2I | GAAGAC | 1 cut(s) | 795 |
| BstZ17I | GTATAC | 1 cut(s) | 1306 |
| Bsu36I | CCTNAGG | 2 cut(s) | 552, 1461 |
| BsuRI | GGCC | 4 cut(s) | 838, 909, 1685, 1801 |
| BtsCI | GGATG | 9 cut(s) | 25, 161, 236, 314, 724, 964, 1467, 1478, 1630 |
| BtsIMutI | CAGTG | 1 cut(s) | 882 |
| Cac8I | GCNNGC | 3 cut(s) | 124, 1111, 1793 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1368 |
| CciI | TCATGA | 1 cut(s) | 543 |
| CfoI | GCGC | 2 cut(s) | 589, 1739 |
| Cfr13I | GGNCC | 3 cut(s) | 862, 907, 1229 |
| Csp6I | GTAC | 2 cut(s) | 1457, 1861 |
| CviAII | CATG | 4 cut(s) | 544, 1043, 1577, 1712 |
| CviQI | GTAC | 2 cut(s) | 1457, 1861 |
| DdeI | CTNAG | 7 cut(s) | 225, 303, 552, 828, 894, 1461, 1796 |
| DpnI | GATC | 4 cut(s) | 528, 572, 1161, 1167 |
| DpnII | GATC | 4 cut(s) | 526, 570, 1159, 1165 |
| EaeI | YGGCCR | 1 cut(s) | 836 |
| Eam1104I | CTCTTC | 2 cut(s) | 491, 1091 |
| EarI | CTCTTC | 2 cut(s) | 491, 1091 |
| Eco24I | GRGCYC | 3 cut(s) | 900, 1039, 1208 |
| Eco32I | GATATC | 2 cut(s) | 559, 1000 |
| Eco47I | GGWCC | 2 cut(s) | 862, 1229 |
| Eco57I | CTGAAG | 1 cut(s) | 678 |
| Eco81I | CCTNAGG | 2 cut(s) | 552, 1461 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 695 |
| EcoO109I | RGGNCCY | 1 cut(s) | 907 |
| EcoRV | GATATC | 2 cut(s) | 559, 1000 |
| EcoT38I | GRGCYC | 3 cut(s) | 900, 1039, 1208 |
| FaeI | CATG | 4 cut(s) | 547, 1046, 1580, 1715 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 620, 652, 1255, 1287 |
| FaqI | GGGAC | 2 cut(s) | 869, 1773 |
| FatI | CATG | 4 cut(s) | 543, 1042, 1576, 1711 |
| FbaI | TGATCA | 2 cut(s) | 570, 1159 |
| FblI | GTMKAC | 2 cut(s) | 1305, 1412 |
| Fnu4HI | GCNGC | 6 cut(s) | 642, 1056, 1366, 1369, 1434, 1593 |
| FokI | GGATG | 9 cut(s) | 12, 148, 223, 301, 731, 971, 1454, 1465, 1637 |
| FriOI | GRGCYC | 3 cut(s) | 900, 1039, 1208 |
| Fsp4HI | GCNGC | 6 cut(s) | 642, 1056, 1366, 1369, 1434, 1593 |
| FspBI | CTAG | 1 cut(s) | 1838 |
| GlaI | GCGC | 2 cut(s) | 588, 1738 |
| GluI | GCNGC | 6 cut(s) | 642, 1056, 1366, 1369, 1434, 1593 |
| GsaI | CCCAGC | 7 cut(s) | 170, 215, 245, 293, 323, 371, 446 |
| GsuI | CTGGAG | 5 cut(s) | 102, 177, 255, 333, 1302 |
| HaeIII | GGCC | 4 cut(s) | 838, 909, 1685, 1801 |
| HapII | CCGG | 4 cut(s) | 742, 1232, 1528, 1646 |
| HhaI | GCGC | 2 cut(s) | 589, 1739 |
| Hin1II | CATG | 4 cut(s) | 547, 1046, 1580, 1715 |
| Hin6I | GCGC | 2 cut(s) | 587, 1737 |
| HinP1I | GCGC | 2 cut(s) | 587, 1737 |
| HincII | GTYRAC | 2 cut(s) | 479, 1413 |
| HindII | GTYRAC | 2 cut(s) | 479, 1413 |
| HindIII | AAGCTT | 2 cut(s) | 1154, 1387 |
| HpaII | CCGG | 4 cut(s) | 742, 1232, 1528, 1646 |
| HphI | GGTGA | 5 cut(s) | 1200, 1317, 1405, 1411, 1552 |
| Hpy166II | GTNNAC | 4 cut(s) | 479, 1306, 1352, 1413 |
| Hpy8I | GTNNAC | 4 cut(s) | 479, 1306, 1352, 1413 |
| HpyCH4III | ACNGT | 4 cut(s) | 1097, 1238, 1693, 1817 |
| HpyCH4IV | ACGT | 1 cut(s) | 1171 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1043, 1052, 1064, 1433, 1682, 1745 |
| HpyF3I | CTNAG | 7 cut(s) | 225, 303, 552, 828, 894, 1461, 1796 |
| HpySE526I | ACGT | 1 cut(s) | 1171 |
| Hsp92II | CATG | 4 cut(s) | 547, 1046, 1580, 1715 |
| HspAI | GCGC | 2 cut(s) | 587, 1737 |
| Kpn2I | TCCGGA | 1 cut(s) | 1231 |
| KpnI | GGTACC | 1 cut(s) | 1460 |
| Ksp22I | TGATCA | 2 cut(s) | 570, 1159 |
| Kzo9I | GATC | 4 cut(s) | 526, 570, 1159, 1165 |
| LmnI | GCTCC | 1 cut(s) | 930 |
| Lsp1109I | GCAGC | 5 cut(s) | 1042, 1352, 1355, 1420, 1579 |
| LweI | GCATC | 3 cut(s) | 1054, 1067, 1615 |
| MaeI | CTAG | 1 cut(s) | 1838 |
| MaeII | ACGT | 1 cut(s) | 1171 |
| MaeIII | GTNAC | 5 cut(s) | 703, 1097, 1222, 1323, 1699 |
| MalI | GATC | 4 cut(s) | 528, 572, 1161, 1167 |
| MbiI | CCGCTC | 2 cut(s) | 644, 1726 |
| MboI | GATC | 4 cut(s) | 526, 570, 1159, 1165 |
| MhlI | GDGCHC | 5 cut(s) | 416, 900, 1039, 1208, 1354 |
| MluCI | AATT | 6 cut(s) | 13, 530, 582, 729, 950, 1310 |
| MlyI | GAGTC | 5 cut(s) | 1094, 1418, 1502, 1755, 1779 |
| MmeI | TCCRAC | 5 cut(s) | 696, 1008, 1162, 1298, 1594 |
| MroI | TCCGGA | 1 cut(s) | 1231 |
| MseI | TTAA | 4 cut(s) | 426, 903, 1193, 1262 |
| MspA1I | CMGCKG | 1 cut(s) | 1365 |
| MspCI | CTTAAG | 1 cut(s) | 1192 |
| MspI | CCGG | 4 cut(s) | 742, 1232, 1528, 1646 |
| MspR9I | CCNGG | 1 cut(s) | 1529 |
| Mva1269I | GAATGC | 2 cut(s) | 1338, 1436 |
| MvnI | CGCG | 2 cut(s) | 939, 1737 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1043, 1052, 1064, 1433, 1682, 1745 |
| NciI | CCSGG | 1 cut(s) | 1529 |
| NdeII | GATC | 4 cut(s) | 526, 570, 1159, 1165 |
| NlaIII | CATG | 4 cut(s) | 547, 1046, 1580, 1715 |
| NlaIV | GGNNCC | 1 cut(s) | 1458 |
| NmuCI | GTSAC | 3 cut(s) | 703, 1097, 1323 |
| PagI | TCATGA | 1 cut(s) | 543 |
| PctI | GAATGC | 2 cut(s) | 1338, 1436 |
| PfeI | GAWTC | 5 cut(s) | 41, 547, 601, 1198, 1402 |
| PflFI | GACNNNGTC | 1 cut(s) | 860 |
| PfoI | TCCNGGA | 1 cut(s) | 1527 |
| PkrI | GCNGC | 6 cut(s) | 643, 1057, 1367, 1370, 1435, 1594 |
| PleI | GAGTC | 5 cut(s) | 1094, 1417, 1501, 1755, 1779 |
| PpsI | GAGTC | 5 cut(s) | 1094, 1417, 1501, 1755, 1779 |
| PsiI | TTATAA | 2 cut(s) | 735, 762 |
| Psp1406I | AACGTT | 1 cut(s) | 1171 |
| PspFI | CCCAGC | 7 cut(s) | 166, 211, 241, 289, 319, 367, 442 |
| PspN4I | GGNNCC | 1 cut(s) | 1458 |
| PspPI | GGNCC | 3 cut(s) | 862, 907, 1229 |
| PstI | CTGCAG | 1 cut(s) | 1180 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1368 |
| PsyI | GACNNNGTC | 1 cut(s) | 860 |
| PvuII | CAGCTG | 1 cut(s) | 1365 |
| RsaI | GTAC | 2 cut(s) | 1458, 1862 |
| RsaNI | GTAC | 2 cut(s) | 1457, 1861 |
| SalI | GTCGAC | 1 cut(s) | 1411 |
| SaqAI | TTAA | 4 cut(s) | 426, 903, 1193, 1262 |
| SatI | GCNGC | 6 cut(s) | 642, 1056, 1366, 1369, 1434, 1593 |
| Sau3AI | GATC | 4 cut(s) | 526, 570, 1159, 1165 |
| Sau96I | GGNCC | 3 cut(s) | 862, 907, 1229 |
| SchI | GAGTC | 5 cut(s) | 1094, 1418, 1502, 1755, 1779 |
| ScrFI | CCNGG | 1 cut(s) | 1529 |
| SduI | GDGCHC | 5 cut(s) | 416, 900, 1039, 1208, 1354 |
| SfaNI | GCATC | 3 cut(s) | 1054, 1067, 1615 |
| SfcI | CTRYAG | 1 cut(s) | 1176 |
| SinI | GGWCC | 2 cut(s) | 862, 1229 |
| SmlI | CTYRAG | 2 cut(s) | 1192, 1763 |
| SmoI | CTYRAG | 2 cut(s) | 1192, 1763 |
| Sse9I | AATT | 6 cut(s) | 13, 530, 582, 729, 950, 1310 |
| SsiI | CCGC | 3 cut(s) | 36, 642, 1724 |
| SspMI | CTAG | 1 cut(s) | 1838 |
| StyD4I | CCNGG | 1 cut(s) | 1527 |
| TaaI | ACNGT | 4 cut(s) | 1097, 1238, 1693, 1817 |
| TaiI | ACGT | 1 cut(s) | 1174 |
| TaqI | TCGA | 2 cut(s) | 561, 1412 |
| TasI | AATT | 6 cut(s) | 13, 530, 582, 729, 950, 1310 |
| TauI | GCSGC | 1 cut(s) | 644 |
| TfiI | GAWTC | 5 cut(s) | 41, 547, 601, 1198, 1402 |
| Tru1I | TTAA | 4 cut(s) | 426, 903, 1193, 1262 |
| Tru9I | TTAA | 4 cut(s) | 426, 903, 1193, 1262 |
| TscAI | CASTG | 1 cut(s) | 882 |
| TseFI | GTSAC | 3 cut(s) | 703, 1097, 1323 |
| TseI | GCWGC | 5 cut(s) | 1055, 1365, 1368, 1433, 1592 |
| Tsp45I | GTSAC | 3 cut(s) | 703, 1097, 1323 |
| TspRI | CASTG | 1 cut(s) | 882 |
| Tth111I | GACNNNGTC | 1 cut(s) | 860 |
| Vha464I | CTTAAG | 1 cut(s) | 1192 |
| VneI | GTGCAC | 1 cut(s) | 1350 |
| VpaK11BI | GGWCC | 2 cut(s) | 862, 1229 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 695 |
| XapI | RAATTY | 1 cut(s) | 950 |
| XmiI | GTMKAC | 2 cut(s) | 1305, 1412 |
| XspI | CTAG | 1 cut(s) | 1838 |