RNA helicase SDE3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOV-10_beta-barrel | PF21634 | 326 - 408 | 3.3e-08 | Helicase MOV-10, beta-barrel domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 989 |
| Acc65I | GGTACC | 1 cut(s) | 1648 |
| AccB1I | GGYRCC | 1 cut(s) | 1648 |
| AccI | GTMKAC | 1 cut(s) | 924 |
| AciI | CCGC | 4 cut(s) | 606, 629, 751, 1391 |
| AclI | AACGTT | 1 cut(s) | 395 |
| AclWI | GGATC | 4 cut(s) | 12, 51, 113, 679 |
| AcoI | YGGCCR | 1 cut(s) | 1938 |
| AcuI | CTGAAG | 1 cut(s) | 149 |
| AcyI | GRCGYC | 2 cut(s) | 1054, 1779 |
| AfaI | GTAC | 3 cut(s) | 627, 1432, 1650 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 750, 1121 |
| AflII | CTTAAG | 2 cut(s) | 490, 706 |
| AflIII | ACRYGT | 3 cut(s) | 545, 736, 1608 |
| AgsI | TTSAA | 7 cut(s) | 74, 970, 1030, 1268, 1585, 1957, 1973 |
| AjnI | CCWGG | 1 cut(s) | 1940 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1467, 1499 |
| Alw21I | GWGCWC | 2 cut(s) | 1255, 1880 |
| Alw26I | GTCTC | 4 cut(s) | 267, 876, 1045, 1835 |
| AlwI | GGATC | 4 cut(s) | 12, 51, 113, 679 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1046 |
| Ama87I | CYCGRG | 1 cut(s) | 355 |
| AoxI | GGCC | 3 cut(s) | 1387, 1411, 1938 |
| Asp718I | GGTACC | 1 cut(s) | 1648 |
| AspLEI | GCGC | 1 cut(s) | 1929 |
| AspS9I | GGNCC | 3 cut(s) | 1388, 1411, 1944 |
| AsuHPI | GGTGA | 5 cut(s) | 420, 424, 450, 666, 1153 |
| AvaI | CYCGRG | 1 cut(s) | 355 |
| AvaII | GGWCC | 1 cut(s) | 1944 |
| BaeGI | GKGCMC | 2 cut(s) | 849, 1546 |
| BalI | TGGCCA | 1 cut(s) | 1940 |
| BanI | GGYRCC | 1 cut(s) | 1648 |
| BanII | GRGCYC | 1 cut(s) | 1255 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1949, 1981 |
| BbsI | GAAGAC | 2 cut(s) | 548, 1964 |
| Bbv12I | GWGCWC | 2 cut(s) | 1255, 1880 |
| BbvCI | CCTCAGC | 2 cut(s) | 508, 915 |
| BceAI | ACGGC | 1 cut(s) | 1699 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1077, 1111 |
| BciT130I | CCWGG | 1 cut(s) | 1942 |
| BclI | TGATCA | 2 cut(s) | 561, 1675 |
| BcoDI | GTCTC | 4 cut(s) | 267, 876, 1045, 1835 |
| BfaI | CTAG | 3 cut(s) | 378, 645, 1755 |
| BfmI | CTRYAG | 2 cut(s) | 1260, 1359 |
| BfrI | CTTAAG | 2 cut(s) | 490, 706 |
| Bme1390I | CCNGG | 1 cut(s) | 1942 |
| Bme18I | GGWCC | 1 cut(s) | 1944 |
| BmeT110I | CYCGRG | 1 cut(s) | 355 |
| BmgT120I | GGNCC | 3 cut(s) | 1388, 1411, 1944 |
| BmiI | GGNNCC | 3 cut(s) | 291, 807, 1650 |
| BmrFI | CCNGG | 1 cut(s) | 1942 |
| BmsI | GCATC | 3 cut(s) | 1201, 1283, 1807 |
| BpiI | GAAGAC | 2 cut(s) | 548, 1964 |
| BpmI | CTGGAG | 3 cut(s) | 468, 1503, 1703 |
| Bpu10I | CCTNAGC | 3 cut(s) | 508, 690, 915 |
| BsaHI | GRCGYC | 2 cut(s) | 1054, 1779 |
| BsaJI | CCNNGG | 1 cut(s) | 285 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1467, 1497 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 750, 1121 |
| Bse1I | ACTGG | 1 cut(s) | 18 |
| Bse3DI | GCAATG | 1 cut(s) | 1496 |
| BseBI | CCWGG | 1 cut(s) | 1942 |
| BseDI | CCNNGG | 1 cut(s) | 285 |
| BseGI | GGATG | 8 cut(s) | 19, 65, 383, 683, 1012, 1111, 1195, 1822 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 750, 1121 |
| BseMI | GCAATG | 1 cut(s) | 1496 |
| BseMII | CTCAG | 7 cut(s) | 41, 170, 522, 906, 1038, 1824, 1993 |
| BseNI | ACTGG | 1 cut(s) | 18 |
| BseRI | GAGGAG | 2 cut(s) | 712, 1655 |
| BseSI | GKGCMC | 2 cut(s) | 849, 1546 |
| BshFI | GGCC | 3 cut(s) | 1389, 1413, 1940 |
| BshNI | GGYRCC | 1 cut(s) | 1648 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1255, 1880 |
| BsiHKCI | CYCGRG | 1 cut(s) | 355 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 750, 1121 |
| BsmAI | GTCTC | 4 cut(s) | 267, 876, 1045, 1835 |
| BsmBI | CGTCTC | 2 cut(s) | 267, 1045 |
| BsmI | GAATGC | 3 cut(s) | 224, 652, 1125 |
| BsnI | GGCC | 3 cut(s) | 1389, 1413, 1940 |
| BsoBI | CYCGRG | 1 cut(s) | 355 |
| Bsp1286I | GDGCHC | 4 cut(s) | 849, 1255, 1546, 1880 |
| BspACI | CCGC | 4 cut(s) | 606, 629, 751, 1391 |
| BspANI | GGCC | 3 cut(s) | 1389, 1413, 1940 |
| BspCNI | CTCAG | 7 cut(s) | 40, 169, 521, 907, 1039, 1825, 1992 |
| BspHI | TCATGA | 1 cut(s) | 1678 |
| BspLI | GGNNCC | 3 cut(s) | 291, 807, 1650 |
| BspMAI | CTGCAG | 2 cut(s) | 1264, 1363 |
| BspPI | GGATC | 4 cut(s) | 12, 51, 113, 679 |
| BspQI | GCTCTTC | 1 cut(s) | 1139 |
| BspT107I | GGYRCC | 1 cut(s) | 1648 |
| BspTI | CTTAAG | 2 cut(s) | 490, 706 |
| BsrDI | GCAATG | 1 cut(s) | 1496 |
| BsrI | ACTGG | 1 cut(s) | 18 |
| BssECI | CCNNGG | 1 cut(s) | 285 |
| BssNI | GRCGYC | 2 cut(s) | 1054, 1779 |
| BssT1I | CCWWGG | 1 cut(s) | 285 |
| Bst2UI | CCWGG | 1 cut(s) | 1942 |
| Bst4CI | ACNGT | 3 cut(s) | 282, 1136, 1455 |
| Bst6I | CTCTTC | 1 cut(s) | 1139 |
| BstACI | GRCGYC | 2 cut(s) | 1054, 1779 |
| BstAFI | CTTAAG | 2 cut(s) | 490, 706 |
| BstC8I | GCNNGC | 2 cut(s) | 714, 1391 |
| BstF5I | GGATG | 8 cut(s) | 19, 65, 383, 683, 1012, 1111, 1195, 1822 |
| BstHHI | GCGC | 1 cut(s) | 1929 |
| BstMAI | GTCTC | 4 cut(s) | 267, 876, 1045, 1835 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1259, 1268, 1386, 1826, 1865 |
| BstNI | CCWGG | 1 cut(s) | 1942 |
| BstNSI | RCATGY | 5 cut(s) | 524, 549, 740, 1563, 1612 |
| BstSCI | CCNGG | 1 cut(s) | 1940 |
| BstSFI | CTRYAG | 2 cut(s) | 1260, 1359 |
| BstSLI | GKGCMC | 2 cut(s) | 849, 1546 |
| BstV2I | GAAGAC | 2 cut(s) | 548, 1964 |
| BsuRI | GGCC | 3 cut(s) | 1389, 1413, 1940 |
| BtsCI | GGATG | 8 cut(s) | 19, 65, 383, 683, 1012, 1111, 1195, 1822 |
| BtsI | GCAGTG | 1 cut(s) | 1782 |
| BtsIMutI | CAGTG | 3 cut(s) | 11, 596, 1782 |
| Cac8I | GCNNGC | 2 cut(s) | 714, 1391 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1046 |
| CciI | TCATGA | 1 cut(s) | 1678 |
| CfoI | GCGC | 1 cut(s) | 1929 |
| Cfr13I | GGNCC | 3 cut(s) | 1388, 1411, 1944 |
| CseI | GACGC | 2 cut(s) | 1062, 1768 |
| Csp6I | GTAC | 3 cut(s) | 626, 1431, 1649 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 267, 302 |
| CviQI | GTAC | 3 cut(s) | 626, 1431, 1649 |
| DraI | TTTAAA | 1 cut(s) | 1246 |
| EaeI | YGGCCR | 1 cut(s) | 1938 |
| Eam1104I | CTCTTC | 1 cut(s) | 1139 |
| EarI | CTCTTC | 1 cut(s) | 1139 |
| Ecl136II | GAGCTC | 1 cut(s) | 1253 |
| Eco130I | CCWWGG | 1 cut(s) | 285 |
| Eco24I | GRGCYC | 1 cut(s) | 1255 |
| Eco47I | GGWCC | 1 cut(s) | 1944 |
| Eco53kI | GAGCTC | 1 cut(s) | 1253 |
| Eco57I | CTGAAG | 1 cut(s) | 149 |
| Eco88I | CYCGRG | 1 cut(s) | 355 |
| EcoICRI | GAGCTC | 1 cut(s) | 1253 |
| EcoRII | CCWGG | 1 cut(s) | 1940 |
| EcoT14I | CCWWGG | 1 cut(s) | 285 |
| EcoT38I | GRGCYC | 1 cut(s) | 1255 |
| ErhI | CCWWGG | 1 cut(s) | 285 |
| Esp3I | CGTCTC | 2 cut(s) | 267, 1045 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 484, 516, 557, 589, 700, 732, 878, 910 |
| FauI | CCCGC | 3 cut(s) | 613, 744, 1398 |
| FauNDI | CATATG | 2 cut(s) | 1210, 1538 |
| FbaI | TGATCA | 2 cut(s) | 561, 1675 |
| FblI | GTMKAC | 1 cut(s) | 924 |
| FokI | GGATG | 8 cut(s) | 6, 52, 370, 670, 1019, 1118, 1182, 1829 |
| FriOI | GRGCYC | 1 cut(s) | 1255 |
| FspBI | CTAG | 3 cut(s) | 378, 645, 1755 |
| GlaI | GCGC | 1 cut(s) | 1928 |
| GsuI | CTGGAG | 3 cut(s) | 468, 1503, 1703 |
| HaeIII | GGCC | 3 cut(s) | 1389, 1413, 1940 |
| HgaI | GACGC | 2 cut(s) | 1062, 1768 |
| HhaI | GCGC | 1 cut(s) | 1929 |
| Hin1I | GRCGYC | 2 cut(s) | 1054, 1779 |
| Hin6I | GCGC | 1 cut(s) | 1927 |
| HinP1I | GCGC | 1 cut(s) | 1927 |
| HindIII | AAGCTT | 1 cut(s) | 822 |
| HinfI | GANTC | 6 cut(s) | 455, 1037, 1426, 1445, 1594, 1660 |
| HphI | GGTGA | 5 cut(s) | 420, 424, 450, 666, 1153 |
| Hpy166II | GTNNAC | 2 cut(s) | 471, 925 |
| Hpy188I | TCNGA | 5 cut(s) | 454, 1172, 1200, 1444, 2002 |
| Hpy8I | GTNNAC | 2 cut(s) | 471, 925 |
| Hpy99I | CGWCG | 1 cut(s) | 1568 |
| HpyAV | CCTTC | 5 cut(s) | 172, 997, 1104, 1769, 1943 |
| HpyCH4III | ACNGT | 3 cut(s) | 282, 1136, 1455 |
| HpyCH4IV | ACGT | 1 cut(s) | 395 |
| HpyCH4V | TGCA | 9 cut(s) | 224, 778, 976, 1088, 1262, 1274, 1361, 1501, 1628 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1259, 1268, 1386, 1826, 1865 |
| HpySE526I | ACGT | 1 cut(s) | 395 |
| Hsp92I | GRCGYC | 2 cut(s) | 1054, 1779 |
| HspAI | GCGC | 1 cut(s) | 1927 |
| KpnI | GGTACC | 1 cut(s) | 1652 |
| Ksp22I | TGATCA | 2 cut(s) | 561, 1675 |
| LguI | GCTCTTC | 1 cut(s) | 1139 |
| LmnI | GCTCC | 1 cut(s) | 1424 |
| LweI | GCATC | 3 cut(s) | 1201, 1283, 1807 |
| MaeI | CTAG | 3 cut(s) | 378, 645, 1755 |
| MaeII | ACGT | 1 cut(s) | 395 |
| MaeIII | GTNAC | 5 cut(s) | 961, 1604, 1750, 1780, 1891 |
| MhlI | GDGCHC | 4 cut(s) | 849, 1255, 1546, 1880 |
| MlsI | TGGCCA | 1 cut(s) | 1940 |
| MluCI | AATT | 4 cut(s) | 984, 1025, 1342, 1861 |
| MluNI | TGGCCA | 1 cut(s) | 1940 |
| MlyI | GAGTC | 1 cut(s) | 1439 |
| MmeI | TCCRAC | 2 cut(s) | 725, 936 |
| Mox20I | TGGCCA | 1 cut(s) | 1940 |
| MscI | TGGCCA | 1 cut(s) | 1940 |
| MseI | TTAA | 8 cut(s) | 363, 491, 707, 819, 878, 1230, 1245, 1550 |
| MslI | CAYNNNNRTG | 2 cut(s) | 519, 735 |
| Msp20I | TGGCCA | 1 cut(s) | 1940 |
| MspA1I | CMGCKG | 3 cut(s) | 146, 751, 1883 |
| MspCI | CTTAAG | 2 cut(s) | 490, 706 |
| MspR9I | CCNGG | 1 cut(s) | 1942 |
| Mva1269I | GAATGC | 3 cut(s) | 224, 652, 1125 |
| MvaI | CCWGG | 1 cut(s) | 1942 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1259, 1268, 1386, 1826, 1865 |
| NdeI | CATATG | 2 cut(s) | 1210, 1538 |
| NlaIV | GGNNCC | 3 cut(s) | 291, 807, 1650 |
| NmuCI | GTSAC | 3 cut(s) | 961, 1604, 1780 |
| NspI | RCATGY | 5 cut(s) | 524, 549, 740, 1563, 1612 |
| PagI | TCATGA | 1 cut(s) | 1678 |
| PciI | ACATGT | 3 cut(s) | 545, 736, 1608 |
| PciSI | GCTCTTC | 1 cut(s) | 1139 |
| PctI | GAATGC | 3 cut(s) | 224, 652, 1125 |
| PfeI | GAWTC | 5 cut(s) | 455, 1037, 1426, 1594, 1660 |
| PleI | GAGTC | 1 cut(s) | 1439 |
| PpsI | GAGTC | 1 cut(s) | 1439 |
| PscI | ACATGT | 3 cut(s) | 545, 736, 1608 |
| PsiI | TTATAA | 1 cut(s) | 989 |
| Psp124BI | GAGCTC | 1 cut(s) | 1255 |
| Psp1406I | AACGTT | 1 cut(s) | 395 |
| Psp6I | CCWGG | 1 cut(s) | 1940 |
| PspGI | CCWGG | 1 cut(s) | 1940 |
| PspN4I | GGNNCC | 3 cut(s) | 291, 807, 1650 |
| PspPI | GGNCC | 3 cut(s) | 1388, 1411, 1944 |
| PstI | CTGCAG | 2 cut(s) | 1264, 1363 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1046 |
| PvuII | CAGCTG | 2 cut(s) | 146, 1883 |
| RsaI | GTAC | 3 cut(s) | 627, 1432, 1650 |
| RsaNI | GTAC | 3 cut(s) | 626, 1431, 1649 |
| RseI | CAYNNNNRTG | 2 cut(s) | 519, 735 |
| SacI | GAGCTC | 1 cut(s) | 1255 |
| SapI | GCTCTTC | 1 cut(s) | 1139 |
| SaqAI | TTAA | 8 cut(s) | 363, 491, 707, 819, 878, 1230, 1245, 1550 |
| Sau96I | GGNCC | 3 cut(s) | 1388, 1411, 1944 |
| SchI | GAGTC | 1 cut(s) | 1439 |
| ScrFI | CCNGG | 1 cut(s) | 1942 |
| SduI | GDGCHC | 4 cut(s) | 849, 1255, 1546, 1880 |
| SfaNI | GCATC | 3 cut(s) | 1201, 1283, 1807 |
| SfcI | CTRYAG | 2 cut(s) | 1260, 1359 |
| SinI | GGWCC | 1 cut(s) | 1944 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 519, 735 |
| SmlI | CTYRAG | 2 cut(s) | 490, 706 |
| SmoI | CTYRAG | 2 cut(s) | 490, 706 |
| Sse9I | AATT | 4 cut(s) | 984, 1025, 1342, 1861 |
| SsiI | CCGC | 4 cut(s) | 606, 629, 751, 1391 |
| SspMI | CTAG | 3 cut(s) | 378, 645, 1755 |
| SstI | GAGCTC | 1 cut(s) | 1255 |
| StyD4I | CCNGG | 1 cut(s) | 1940 |
| StyI | CCWWGG | 1 cut(s) | 285 |
| TaaI | ACNGT | 3 cut(s) | 282, 1136, 1455 |
| TaiI | ACGT | 1 cut(s) | 398 |
| TaqI | TCGA | 5 cut(s) | 253, 827, 1486, 1615, 1633 |
| TaqII | GACCGA | 1 cut(s) | 1961 |
| TasI | AATT | 4 cut(s) | 984, 1025, 1342, 1861 |
| TfiI | GAWTC | 5 cut(s) | 455, 1037, 1426, 1594, 1660 |
| Tru1I | TTAA | 8 cut(s) | 363, 491, 707, 819, 878, 1230, 1245, 1550 |
| Tru9I | TTAA | 8 cut(s) | 363, 491, 707, 819, 878, 1230, 1245, 1550 |
| TscAI | CASTG | 3 cut(s) | 18, 603, 1789 |
| TseFI | GTSAC | 3 cut(s) | 961, 1604, 1780 |
| Tsp45I | GTSAC | 3 cut(s) | 961, 1604, 1780 |
| TspGWI | ACGGA | 2 cut(s) | 249, 1411 |
| TspRI | CASTG | 3 cut(s) | 18, 603, 1789 |
| Vha464I | CTTAAG | 2 cut(s) | 490, 706 |
| VpaK11BI | GGWCC | 1 cut(s) | 1944 |
| XceI | RCATGY | 5 cut(s) | 524, 549, 740, 1563, 1612 |
| XmiI | GTMKAC | 1 cut(s) | 924 |
| XspI | CTAG | 3 cut(s) | 378, 645, 1755 |