RNA helicase SDE3
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 944 |
| Acc36I | ACCTGC | 2 cut(s) | 476, 944 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 978 |
| AccBSI | CCGCTC | 2 cut(s) | 229, 838 |
| AccII | CGCG | 2 cut(s) | 528, 1013 |
| AciI | CCGC | 4 cut(s) | 229, 299, 395, 838 |
| AclWI | GGATC | 2 cut(s) | 720, 884 |
| AcuI | CTGAAG | 1 cut(s) | 786 |
| AdeI | CACNNNGTG | 2 cut(s) | 745, 978 |
| AfaI | GTAC | 2 cut(s) | 424, 539 |
| AfeI | AGCGCT | 1 cut(s) | 1045 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 978, 1030 |
| AgsI | TTSAA | 1 cut(s) | 263 |
| AjiI | CACGTC | 1 cut(s) | 1055 |
| AjnI | CCWGG | 2 cut(s) | 1023, 1029 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 305, 337 |
| AleI | CACNNNNGTG | 2 cut(s) | 785, 1077 |
| AluBI | AGCT | 4 cut(s) | 355, 404, 845, 1092 |
| AluI | AGCT | 4 cut(s) | 355, 404, 845, 1092 |
| Alw26I | GTCTC | 1 cut(s) | 119 |
| AlwI | GGATC | 2 cut(s) | 720, 884 |
| Aor51HI | AGCGCT | 1 cut(s) | 1045 |
| AoxI | GGCC | 4 cut(s) | 49, 433, 814, 939 |
| ApeKI | GCWGC | 3 cut(s) | 250, 301, 1089 |
| AspLEI | GCGC | 2 cut(s) | 528, 1046 |
| AspS9I | GGNCC | 4 cut(s) | 49, 407, 763, 1027 |
| AsuC2I | CCSGG | 1 cut(s) | 200 |
| AsuHPI | GGTGA | 1 cut(s) | 887 |
| AsuNHI | GCTAGC | 2 cut(s) | 697, 841 |
| AvaII | GGWCC | 3 cut(s) | 407, 763, 1027 |
| AxyI | CCTNAGG | 1 cut(s) | 430 |
| BbsI | GAAGAC | 1 cut(s) | 98 |
| BbvI | GCAGC | 2 cut(s) | 262, 288 |
| BccI | CCATC | 1 cut(s) | 180 |
| BceAI | ACGGC | 2 cut(s) | 144, 591 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 121, 155 |
| BciT130I | CCWGG | 2 cut(s) | 1025, 1031 |
| BclI | TGATCA | 2 cut(s) | 342, 859 |
| BcnI | CCSGG | 1 cut(s) | 200 |
| BcoDI | GTCTC | 1 cut(s) | 119 |
| BfaI | CTAG | 5 cut(s) | 143, 609, 698, 842, 1093 |
| BfmI | CTRYAG | 3 cut(s) | 44, 302, 951 |
| BfoI | RGCGCY | 1 cut(s) | 1047 |
| BfuAI | ACCTGC | 2 cut(s) | 476, 944 |
| BisI | GCNGC | 5 cut(s) | 251, 299, 302, 839, 1090 |
| BlsI | GCNGC | 5 cut(s) | 252, 300, 303, 840, 1091 |
| Bme1390I | CCNGG | 3 cut(s) | 200, 1025, 1031 |
| Bme18I | GGWCC | 3 cut(s) | 407, 763, 1027 |
| BmgBI | CACGTC | 1 cut(s) | 1055 |
| BmgT120I | GGNCC | 4 cut(s) | 49, 407, 763, 1027 |
| BmiI | GGNNCC | 3 cut(s) | 153, 399, 618 |
| BmrFI | CCNGG | 3 cut(s) | 200, 1025, 1031 |
| BmrI | ACTGGG | 1 cut(s) | 386 |
| BmsI | GCATC | 2 cut(s) | 541, 587 |
| BmtI | GCTAGC | 2 cut(s) | 701, 845 |
| BmuI | ACTGGG | 1 cut(s) | 386 |
| BpiI | GAAGAC | 1 cut(s) | 98 |
| BpmI | CTGGAG | 1 cut(s) | 212 |
| BpuMI | CCSGG | 1 cut(s) | 200 |
| Bsa29I | ATCGAT | 1 cut(s) | 668 |
| BsaJI | CCNNGG | 1 cut(s) | 582 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 978, 1030 |
| Bse1I | ACTGG | 2 cut(s) | 136, 381 |
| Bse21I | CCTNAGG | 1 cut(s) | 430 |
| Bse3DI | GCAATG | 1 cut(s) | 345 |
| BseBI | CCWGG | 2 cut(s) | 1025, 1031 |
| BseCI | ATCGAT | 1 cut(s) | 668 |
| BseDI | CCNNGG | 1 cut(s) | 582 |
| BseGI | GGATG | 6 cut(s) | 178, 191, 538, 578, 866, 1074 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 978, 1030 |
| BseMI | GCAATG | 1 cut(s) | 345 |
| BseMII | CTCAG | 1 cut(s) | 1031 |
| BseNI | ACTGG | 2 cut(s) | 136, 381 |
| BseRI | GAGGAG | 3 cut(s) | 44, 284, 297 |
| BseXI | GCAGC | 2 cut(s) | 262, 288 |
| BseYI | CCCAGC | 1 cut(s) | 474 |
| Bsh1236I | CGCG | 2 cut(s) | 528, 1013 |
| Bsh1285I | CGRYCG | 1 cut(s) | 99 |
| BshFI | GGCC | 4 cut(s) | 51, 435, 816, 941 |
| BshVI | ATCGAT | 1 cut(s) | 668 |
| BsiEI | CGRYCG | 1 cut(s) | 99 |
| BsiSI | CCGG | 1 cut(s) | 199 |
| BslFI | GGGAC | 2 cut(s) | 86, 611 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 978, 1030 |
| BsmAI | GTCTC | 1 cut(s) | 119 |
| BsmBI | CGTCTC | 1 cut(s) | 119 |
| BsmFI | GGGAC | 2 cut(s) | 86, 611 |
| BsnI | GGCC | 4 cut(s) | 51, 435, 816, 941 |
| Bsp143I | GATC | 7 cut(s) | 96, 342, 712, 859, 876, 1014, 1058 |
| Bsp68I | TCGCGA | 1 cut(s) | 1013 |
| BspACI | CCGC | 4 cut(s) | 229, 299, 395, 838 |
| BspANI | GGCC | 4 cut(s) | 51, 435, 816, 941 |
| BspCNI | CTCAG | 1 cut(s) | 1032 |
| BspDI | ATCGAT | 1 cut(s) | 668 |
| BspFNI | CGCG | 2 cut(s) | 528, 1013 |
| BspHI | TCATGA | 1 cut(s) | 847 |
| BspLI | GGNNCC | 3 cut(s) | 153, 399, 618 |
| BspMAI | CTGCAG | 3 cut(s) | 48, 306, 955 |
| BspMI | ACCTGC | 2 cut(s) | 476, 944 |
| BspOI | GCTAGC | 2 cut(s) | 701, 845 |
| BspPI | GGATC | 2 cut(s) | 720, 884 |
| BsrBI | CCGCTC | 2 cut(s) | 229, 838 |
| BsrDI | GCAATG | 1 cut(s) | 345 |
| BsrI | ACTGG | 2 cut(s) | 136, 381 |
| BssECI | CCNNGG | 1 cut(s) | 582 |
| BssMI | GATC | 7 cut(s) | 96, 342, 712, 859, 876, 1014, 1058 |
| Bst2UI | CCWGG | 2 cut(s) | 1025, 1031 |
| Bst4CI | ACNGT | 5 cut(s) | 209, 586, 743, 904, 922 |
| Bst6I | CTCTTC | 3 cut(s) | 117, 174, 282 |
| BstC8I | GCNNGC | 5 cut(s) | 231, 357, 699, 814, 843 |
| BstDEI | CTNAG | 2 cut(s) | 430, 1040 |
| BstDSI | CCRYGG | 1 cut(s) | 582 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1028 |
| BstF5I | GGATG | 6 cut(s) | 178, 191, 538, 578, 866, 1074 |
| BstFNI | CGCG | 2 cut(s) | 528, 1013 |
| BstH2I | RGCGCY | 1 cut(s) | 1047 |
| BstHHI | GCGC | 2 cut(s) | 528, 1046 |
| BstKTI | GATC | 7 cut(s) | 99, 345, 715, 862, 879, 1017, 1061 |
| BstMAI | GTCTC | 1 cut(s) | 119 |
| BstMBI | GATC | 7 cut(s) | 96, 342, 712, 859, 876, 1014, 1058 |
| BstMCI | CGRYCG | 1 cut(s) | 99 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 356, 401 |
| BstNI | CCWGG | 2 cut(s) | 1025, 1031 |
| BstSCI | CCNGG | 3 cut(s) | 198, 1023, 1029 |
| BstSFI | CTRYAG | 3 cut(s) | 44, 302, 951 |
| BstUI | CGCG | 2 cut(s) | 528, 1013 |
| BstV1I | GCAGC | 2 cut(s) | 262, 288 |
| BstV2I | GAAGAC | 1 cut(s) | 98 |
| BstX2I | RGATCY | 1 cut(s) | 876 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 518, 709 |
| BstYI | RGATCY | 1 cut(s) | 876 |
| Bsu15I | ATCGAT | 1 cut(s) | 668 |
| Bsu36I | CCTNAGG | 1 cut(s) | 430 |
| BsuRI | GGCC | 4 cut(s) | 51, 435, 816, 941 |
| BsuTUI | ATCGAT | 1 cut(s) | 668 |
| BtgI | CCRYGG | 1 cut(s) | 582 |
| BtrI | CACGTC | 1 cut(s) | 1055 |
| BtsCI | GGATG | 6 cut(s) | 178, 191, 538, 578, 866, 1074 |
| BtsI | GCAGTG | 1 cut(s) | 41 |
| BtsIMutI | CAGTG | 1 cut(s) | 41 |
| BtuMI | TCGCGA | 1 cut(s) | 1013 |
| BveI | ACCTGC | 2 cut(s) | 476, 944 |
| Cac8I | GCNNGC | 5 cut(s) | 231, 357, 699, 814, 843 |
| CciI | TCATGA | 1 cut(s) | 847 |
| CfoI | GCGC | 2 cut(s) | 528, 1046 |
| Cfr13I | GGNCC | 4 cut(s) | 49, 407, 763, 1027 |
| ClaI | ATCGAT | 1 cut(s) | 668 |
| Csp6I | GTAC | 2 cut(s) | 423, 538 |
| CviAII | CATG | 6 cut(s) | 148, 254, 448, 512, 848, 1083 |
| CviQI | GTAC | 2 cut(s) | 423, 538 |
| DdeI | CTNAG | 2 cut(s) | 430, 1040 |
| DpnI | GATC | 7 cut(s) | 98, 344, 714, 861, 878, 1016, 1060 |
| DpnII | GATC | 7 cut(s) | 96, 342, 712, 859, 876, 1014, 1058 |
| DraIII | CACNNNGTG | 2 cut(s) | 745, 978 |
| Eam1104I | CTCTTC | 3 cut(s) | 117, 174, 282 |
| EarI | CTCTTC | 3 cut(s) | 117, 174, 282 |
| Eco147I | AGGCCT | 2 cut(s) | 435, 816 |
| Eco47I | GGWCC | 3 cut(s) | 407, 763, 1027 |
| Eco47III | AGCGCT | 1 cut(s) | 1045 |
| Eco57I | CTGAAG | 1 cut(s) | 786 |
| Eco81I | CCTNAGG | 1 cut(s) | 430 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1028 |
| EcoO109I | RGGNCCY | 1 cut(s) | 763 |
| EcoRII | CCWGG | 2 cut(s) | 1023, 1029 |
| EcoT22I | ATGCAT | 1 cut(s) | 556 |
| Esp3I | CGTCTC | 1 cut(s) | 119 |
| FaeI | CATG | 6 cut(s) | 151, 257, 451, 515, 851, 1086 |
| FaqI | GGGAC | 2 cut(s) | 86, 611 |
| FatI | CATG | 6 cut(s) | 147, 253, 447, 511, 847, 1082 |
| FauI | CCCGC | 1 cut(s) | 222 |
| FbaI | TGATCA | 2 cut(s) | 342, 859 |
| Fnu4HI | GCNGC | 5 cut(s) | 251, 299, 302, 839, 1090 |
| FokI | GGATG | 6 cut(s) | 185, 198, 545, 565, 853, 1061 |
| Fsp4HI | GCNGC | 5 cut(s) | 251, 299, 302, 839, 1090 |
| FspBI | CTAG | 5 cut(s) | 143, 609, 698, 842, 1093 |
| GlaI | GCGC | 2 cut(s) | 527, 1045 |
| GluI | GCNGC | 5 cut(s) | 251, 299, 302, 839, 1090 |
| GsaI | CCCAGC | 1 cut(s) | 478 |
| GsuI | CTGGAG | 1 cut(s) | 212 |
| HaeII | RGCGCY | 1 cut(s) | 1047 |
| HaeIII | GGCC | 4 cut(s) | 51, 435, 816, 941 |
| HapII | CCGG | 1 cut(s) | 199 |
| HhaI | GCGC | 2 cut(s) | 528, 1046 |
| Hin1II | CATG | 6 cut(s) | 151, 257, 451, 515, 851, 1086 |
| Hin6I | GCGC | 2 cut(s) | 526, 1044 |
| HinP1I | GCGC | 2 cut(s) | 526, 1044 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HinfI | GANTC | 5 cut(s) | 313, 386, 691, 750, 982 |
| HpaII | CCGG | 1 cut(s) | 199 |
| HphI | GGTGA | 1 cut(s) | 887 |
| Hpy166II | GTNNAC | 2 cut(s) | 205, 540 |
| Hpy188I | TCNGA | 4 cut(s) | 12, 637, 717, 1041 |
| Hpy188III | TCNNGA | 3 cut(s) | 848, 884, 1012 |
| Hpy8I | GTNNAC | 2 cut(s) | 205, 540 |
| Hpy99I | CGWCG | 1 cut(s) | 1059 |
| HpyAV | CCTTC | 1 cut(s) | 1009 |
| HpyCH4III | ACNGT | 5 cut(s) | 209, 586, 743, 904, 922 |
| HpyCH4IV | ACGT | 1 cut(s) | 1054 |
| HpyCH4V | TGCA | 9 cut(s) | 25, 46, 161, 304, 338, 485, 554, 953, 1082 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 356, 401 |
| HpyF3I | CTNAG | 2 cut(s) | 430, 1040 |
| HpySE526I | ACGT | 1 cut(s) | 1054 |
| Hsp92II | CATG | 6 cut(s) | 151, 257, 451, 515, 851, 1086 |
| HspAI | GCGC | 2 cut(s) | 526, 1044 |
| Ksp22I | TGATCA | 2 cut(s) | 342, 859 |
| Kzo9I | GATC | 7 cut(s) | 96, 342, 712, 859, 876, 1014, 1058 |
| LmnI | GCTCC | 4 cut(s) | 226, 622, 835, 1086 |
| Lsp1109I | GCAGC | 2 cut(s) | 262, 288 |
| LweI | GCATC | 2 cut(s) | 541, 587 |
| MaeI | CTAG | 5 cut(s) | 143, 609, 698, 842, 1093 |
| MaeII | ACGT | 1 cut(s) | 1054 |
| MaeIII | GTNAC | 3 cut(s) | 113, 438, 1050 |
| MalI | GATC | 7 cut(s) | 98, 344, 714, 861, 878, 1016, 1060 |
| MbiI | CCGCTC | 2 cut(s) | 229, 838 |
| MboI | GATC | 7 cut(s) | 96, 342, 712, 859, 876, 1014, 1058 |
| MboII | GAAGA | 7 cut(s) | 103, 134, 191, 299, 380, 745, 792 |
| MfeI | CAATTG | 1 cut(s) | 20 |
| MflI | RGATCY | 1 cut(s) | 876 |
| MluCI | AATT | 2 cut(s) | 20, 258 |
| MlyI | GAGTC | 1 cut(s) | 700 |
| MmeI | TCCRAC | 2 cut(s) | 690, 904 |
| Mph1103I | ATGCAT | 1 cut(s) | 556 |
| MslI | CAYNNNNRTG | 4 cut(s) | 452, 510, 785, 1077 |
| MspA1I | CMGCKG | 3 cut(s) | 301, 395, 404 |
| MspI | CCGG | 1 cut(s) | 199 |
| MspR9I | CCNGG | 3 cut(s) | 200, 1025, 1031 |
| MunI | CAATTG | 1 cut(s) | 20 |
| MvaI | CCWGG | 2 cut(s) | 1025, 1031 |
| MvnI | CGCG | 2 cut(s) | 528, 1013 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 356, 401 |
| NciI | CCSGG | 1 cut(s) | 200 |
| NdeII | GATC | 7 cut(s) | 96, 342, 712, 859, 876, 1014, 1058 |
| NheI | GCTAGC | 2 cut(s) | 697, 841 |
| NlaIII | CATG | 6 cut(s) | 151, 257, 451, 515, 851, 1086 |
| NlaIV | GGNNCC | 3 cut(s) | 153, 399, 618 |
| NmuCI | GTSAC | 2 cut(s) | 113, 1050 |
| NruI | TCGCGA | 1 cut(s) | 1013 |
| NsiI | ATGCAT | 1 cut(s) | 556 |
| OliI | CACNNNNGTG | 2 cut(s) | 785, 1077 |
| PagI | TCATGA | 1 cut(s) | 847 |
| PaqCI | CACCTGC | 1 cut(s) | 944 |
| PceI | AGGCCT | 2 cut(s) | 435, 816 |
| PfeI | GAWTC | 4 cut(s) | 313, 386, 750, 982 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 978 |
| PkrI | GCNGC | 5 cut(s) | 252, 300, 303, 840, 1091 |
| Ple19I | CGATCG | 1 cut(s) | 99 |
| PleI | GAGTC | 1 cut(s) | 699 |
| PpsI | GAGTC | 1 cut(s) | 699 |
| PpuMI | RGGWCCY | 1 cut(s) | 763 |
| Psp5II | RGGWCCY | 1 cut(s) | 763 |
| Psp6I | CCWGG | 2 cut(s) | 1023, 1029 |
| PspFI | CCCAGC | 1 cut(s) | 474 |
| PspGI | CCWGG | 2 cut(s) | 1023, 1029 |
| PspN4I | GGNNCC | 3 cut(s) | 153, 399, 618 |
| PspPI | GGNCC | 4 cut(s) | 49, 407, 763, 1027 |
| PspPPI | RGGWCCY | 1 cut(s) | 763 |
| PstI | CTGCAG | 3 cut(s) | 48, 306, 955 |
| PsuI | RGATCY | 1 cut(s) | 876 |
| PvuI | CGATCG | 1 cut(s) | 99 |
| PvuII | CAGCTG | 1 cut(s) | 404 |
| RruI | TCGCGA | 1 cut(s) | 1013 |
| RsaI | GTAC | 2 cut(s) | 424, 539 |
| RsaNI | GTAC | 2 cut(s) | 423, 538 |
| RseI | CAYNNNNRTG | 4 cut(s) | 452, 510, 785, 1077 |
| SatI | GCNGC | 5 cut(s) | 251, 299, 302, 839, 1090 |
| Sau3AI | GATC | 7 cut(s) | 96, 342, 712, 859, 876, 1014, 1058 |
| Sau96I | GGNCC | 4 cut(s) | 49, 407, 763, 1027 |
| SchI | GAGTC | 1 cut(s) | 700 |
| ScrFI | CCNGG | 3 cut(s) | 200, 1025, 1031 |
| SfaNI | GCATC | 2 cut(s) | 541, 587 |
| SfcI | CTRYAG | 3 cut(s) | 44, 302, 951 |
| SinI | GGWCC | 3 cut(s) | 407, 763, 1027 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 452, 510, 785, 1077 |
| Sse9I | AATT | 2 cut(s) | 20, 258 |
| SseBI | AGGCCT | 2 cut(s) | 435, 816 |
| SsiI | CCGC | 4 cut(s) | 229, 299, 395, 838 |
| SspMI | CTAG | 5 cut(s) | 143, 609, 698, 842, 1093 |
| StuI | AGGCCT | 2 cut(s) | 435, 816 |
| StyD4I | CCNGG | 3 cut(s) | 198, 1023, 1029 |
| TaaI | ACNGT | 5 cut(s) | 209, 586, 743, 904, 922 |
| TaiI | ACGT | 1 cut(s) | 1057 |
| TaqI | TCGA | 4 cut(s) | 99, 668, 885, 1057 |
| TasI | AATT | 2 cut(s) | 20, 258 |
| TatI | WGTACW | 1 cut(s) | 537 |
| TauI | GCSGC | 2 cut(s) | 301, 841 |
| TfiI | GAWTC | 4 cut(s) | 313, 386, 750, 982 |
| TscAI | CASTG | 1 cut(s) | 48 |
| TseFI | GTSAC | 2 cut(s) | 113, 1050 |
| TseI | GCWGC | 3 cut(s) | 250, 301, 1089 |
| Tsp45I | GTSAC | 2 cut(s) | 113, 1050 |
| TspDTI | ATGAA | 5 cut(s) | 192, 270, 491, 759, 855 |
| TspGWI | ACGGA | 2 cut(s) | 889, 1067 |
| TspRI | CASTG | 1 cut(s) | 48 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 978 |
| VpaK11BI | GGWCC | 3 cut(s) | 407, 763, 1027 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1028 |
| XspI | CTAG | 5 cut(s) | 143, 609, 698, 842, 1093 |
| Zsp2I | ATGCAT | 1 cut(s) | 556 |