RNA helicase SDE3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOV-10_beta-barrel | PF21634 | 369 - 448 | 7.7e-08 | Helicase MOV-10, beta-barrel domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1109 |
| Acc65I | GGTACC | 1 cut(s) | 1768 |
| AccB1I | GGYRCC | 1 cut(s) | 1768 |
| AccI | GTMKAC | 1 cut(s) | 1044 |
| AciI | CCGC | 4 cut(s) | 726, 749, 871, 1511 |
| AclWI | GGATC | 4 cut(s) | 12, 74, 242, 799 |
| AcoI | YGGCCR | 1 cut(s) | 2058 |
| AcuI | CTGAAG | 3 cut(s) | 110, 278, 1724 |
| AcyI | GRCGYC | 2 cut(s) | 1174, 1899 |
| AfaI | GTAC | 3 cut(s) | 747, 1552, 1770 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 870, 1241 |
| AflII | CTTAAG | 2 cut(s) | 610, 826 |
| AflIII | ACRYGT | 3 cut(s) | 665, 856, 1728 |
| AgsI | TTSAA | 8 cut(s) | 35, 203, 1090, 1130, 1150, 1388, 2077, 2093 |
| AjnI | CCWGG | 2 cut(s) | 371, 2060 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1587, 1619 |
| Alw21I | GWGCWC | 2 cut(s) | 1375, 2000 |
| Alw26I | GTCTC | 4 cut(s) | 396, 996, 1165, 1955 |
| AlwI | GGATC | 4 cut(s) | 12, 74, 242, 799 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1166 |
| Ama87I | CYCGRG | 1 cut(s) | 484 |
| AoxI | GGCC | 4 cut(s) | 374, 1507, 1531, 2058 |
| Asp718I | GGTACC | 1 cut(s) | 1768 |
| AspLEI | GCGC | 1 cut(s) | 2049 |
| AspS9I | GGNCC | 3 cut(s) | 1508, 1531, 2064 |
| AsuHPI | GGTGA | 6 cut(s) | 553, 570, 786, 837, 1273, 1723 |
| AvaI | CYCGRG | 1 cut(s) | 484 |
| AvaII | GGWCC | 1 cut(s) | 2064 |
| BaeGI | GKGCMC | 2 cut(s) | 969, 1666 |
| BalI | TGGCCA | 1 cut(s) | 2060 |
| BanI | GGYRCC | 1 cut(s) | 1768 |
| BanII | GRGCYC | 1 cut(s) | 1375 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2069, 2101 |
| BbsI | GAAGAC | 2 cut(s) | 668, 2084 |
| Bbv12I | GWGCWC | 2 cut(s) | 1375, 2000 |
| BbvCI | CCTCAGC | 2 cut(s) | 628, 1035 |
| BccI | CCATC | 9 cut(s) | 520, 526, 562, 571, 592, 712, 718, 763, 808 |
| BceAI | ACGGC | 1 cut(s) | 1819 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1197, 1231 |
| BciT130I | CCWGG | 2 cut(s) | 373, 2062 |
| BclI | TGATCA | 2 cut(s) | 681, 1795 |
| BcoDI | GTCTC | 4 cut(s) | 396, 996, 1165, 1955 |
| BfaI | CTAG | 4 cut(s) | 507, 765, 1875, 1976 |
| BfmI | CTRYAG | 2 cut(s) | 1380, 1479 |
| BfrI | CTTAAG | 2 cut(s) | 610, 826 |
| BglII | AGATCT | 1 cut(s) | 1446 |
| Bme1390I | CCNGG | 2 cut(s) | 373, 2062 |
| Bme18I | GGWCC | 1 cut(s) | 2064 |
| BmeT110I | CYCGRG | 1 cut(s) | 484 |
| BmgT120I | GGNCC | 3 cut(s) | 1508, 1531, 2064 |
| BmiI | GGNNCC | 3 cut(s) | 420, 927, 1770 |
| BmrFI | CCNGG | 2 cut(s) | 373, 2062 |
| BmsI | GCATC | 3 cut(s) | 1321, 1403, 1927 |
| BpiI | GAAGAC | 2 cut(s) | 668, 2084 |
| BpmI | CTGGAG | 3 cut(s) | 588, 1623, 1823 |
| Bpu10I | CCTNAGC | 4 cut(s) | 594, 628, 810, 1035 |
| BsaHI | GRCGYC | 2 cut(s) | 1174, 1899 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1587, 1617 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 870, 1241 |
| Bse3DI | GCAATG | 1 cut(s) | 1616 |
| BseBI | CCWGG | 2 cut(s) | 373, 2062 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 7 cut(s) | 26, 194, 512, 803, 1231, 1315, 1942 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 870, 1241 |
| BseMI | GCAATG | 1 cut(s) | 1616 |
| BseMII | CTCAG | 7 cut(s) | 131, 299, 642, 1026, 1158, 1944, 2113 |
| BseRI | GAGGAG | 1 cut(s) | 832 |
| BseSI | GKGCMC | 2 cut(s) | 969, 1666 |
| BshFI | GGCC | 4 cut(s) | 376, 1509, 1533, 2060 |
| BshNI | GGYRCC | 1 cut(s) | 1768 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1375, 2000 |
| BsiHKCI | CYCGRG | 1 cut(s) | 484 |
| BslFI | GGGAC | 1 cut(s) | 574 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 870, 1241 |
| BsmAI | GTCTC | 4 cut(s) | 396, 996, 1165, 1955 |
| BsmBI | CGTCTC | 2 cut(s) | 396, 1165 |
| BsmFI | GGGAC | 1 cut(s) | 574 |
| BsmI | GAATGC | 3 cut(s) | 353, 772, 1245 |
| BsnI | GGCC | 4 cut(s) | 376, 1509, 1533, 2060 |
| BsoBI | CYCGRG | 1 cut(s) | 484 |
| Bsp1286I | GDGCHC | 4 cut(s) | 969, 1375, 1666, 2000 |
| BspACI | CCGC | 4 cut(s) | 726, 749, 871, 1511 |
| BspANI | GGCC | 4 cut(s) | 376, 1509, 1533, 2060 |
| BspCNI | CTCAG | 7 cut(s) | 130, 298, 641, 1027, 1159, 1945, 2112 |
| BspHI | TCATGA | 1 cut(s) | 1798 |
| BspLI | GGNNCC | 3 cut(s) | 420, 927, 1770 |
| BspMAI | CTGCAG | 2 cut(s) | 1384, 1483 |
| BspPI | GGATC | 4 cut(s) | 12, 74, 242, 799 |
| BspQI | GCTCTTC | 1 cut(s) | 1259 |
| BspT107I | GGYRCC | 1 cut(s) | 1768 |
| BspTI | CTTAAG | 2 cut(s) | 610, 826 |
| BsrDI | GCAATG | 1 cut(s) | 1616 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssNI | GRCGYC | 2 cut(s) | 1174, 1899 |
| BssT1I | CCWWGG | 1 cut(s) | 414 |
| Bst2UI | CCWGG | 2 cut(s) | 373, 2062 |
| Bst4CI | ACNGT | 3 cut(s) | 411, 1256, 1575 |
| Bst6I | CTCTTC | 1 cut(s) | 1259 |
| BstACI | GRCGYC | 2 cut(s) | 1174, 1899 |
| BstAFI | CTTAAG | 2 cut(s) | 610, 826 |
| BstC8I | GCNNGC | 2 cut(s) | 834, 1511 |
| BstF5I | GGATG | 7 cut(s) | 26, 194, 512, 803, 1231, 1315, 1942 |
| BstHHI | GCGC | 1 cut(s) | 2049 |
| BstMAI | GTCTC | 4 cut(s) | 396, 996, 1165, 1955 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1379, 1388, 1506, 1946, 1985 |
| BstNI | CCWGG | 2 cut(s) | 373, 2062 |
| BstNSI | RCATGY | 5 cut(s) | 644, 669, 860, 1683, 1732 |
| BstSCI | CCNGG | 2 cut(s) | 371, 2060 |
| BstSFI | CTRYAG | 2 cut(s) | 1380, 1479 |
| BstSLI | GKGCMC | 2 cut(s) | 969, 1666 |
| BstV2I | GAAGAC | 2 cut(s) | 668, 2084 |
| BstX2I | RGATCY | 1 cut(s) | 1446 |
| BstYI | RGATCY | 1 cut(s) | 1446 |
| BsuRI | GGCC | 4 cut(s) | 376, 1509, 1533, 2060 |
| BtsCI | GGATG | 7 cut(s) | 26, 194, 512, 803, 1231, 1315, 1942 |
| BtsI | GCAGTG | 1 cut(s) | 1902 |
| BtsIMutI | CAGTG | 2 cut(s) | 716, 1902 |
| Cac8I | GCNNGC | 2 cut(s) | 834, 1511 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1166 |
| CciI | TCATGA | 1 cut(s) | 1798 |
| CfoI | GCGC | 1 cut(s) | 2049 |
| Cfr13I | GGNCC | 3 cut(s) | 1508, 1531, 2064 |
| CseI | GACGC | 2 cut(s) | 1182, 1888 |
| Csp6I | GTAC | 3 cut(s) | 746, 1551, 1769 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 396, 431 |
| CviQI | GTAC | 3 cut(s) | 746, 1551, 1769 |
| DraI | TTTAAA | 1 cut(s) | 1366 |
| EaeI | YGGCCR | 1 cut(s) | 2058 |
| Eam1104I | CTCTTC | 1 cut(s) | 1259 |
| EarI | CTCTTC | 1 cut(s) | 1259 |
| Ecl136II | GAGCTC | 1 cut(s) | 1373 |
| Eco130I | CCWWGG | 1 cut(s) | 414 |
| Eco24I | GRGCYC | 1 cut(s) | 1375 |
| Eco47I | GGWCC | 1 cut(s) | 2064 |
| Eco53kI | GAGCTC | 1 cut(s) | 1373 |
| Eco57I | CTGAAG | 3 cut(s) | 110, 278, 1724 |
| Eco88I | CYCGRG | 1 cut(s) | 484 |
| EcoICRI | GAGCTC | 1 cut(s) | 1373 |
| EcoRII | CCWGG | 2 cut(s) | 371, 2060 |
| EcoT14I | CCWWGG | 1 cut(s) | 414 |
| EcoT38I | GRGCYC | 1 cut(s) | 1375 |
| ErhI | CCWWGG | 1 cut(s) | 414 |
| Esp3I | CGTCTC | 2 cut(s) | 396, 1165 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 604, 636, 820, 852, 998, 1030 |
| FaqI | GGGAC | 1 cut(s) | 574 |
| FauI | CCCGC | 3 cut(s) | 733, 864, 1518 |
| FauNDI | CATATG | 2 cut(s) | 1330, 1658 |
| FbaI | TGATCA | 2 cut(s) | 681, 1795 |
| FblI | GTMKAC | 1 cut(s) | 1044 |
| FokI | GGATG | 7 cut(s) | 13, 181, 499, 790, 1238, 1302, 1949 |
| FriOI | GRGCYC | 1 cut(s) | 1375 |
| FspBI | CTAG | 4 cut(s) | 507, 765, 1875, 1976 |
| GlaI | GCGC | 1 cut(s) | 2048 |
| GsuI | CTGGAG | 3 cut(s) | 588, 1623, 1823 |
| HaeIII | GGCC | 4 cut(s) | 376, 1509, 1533, 2060 |
| HgaI | GACGC | 2 cut(s) | 1182, 1888 |
| HhaI | GCGC | 1 cut(s) | 2049 |
| Hin1I | GRCGYC | 2 cut(s) | 1174, 1899 |
| Hin6I | GCGC | 1 cut(s) | 2047 |
| HinP1I | GCGC | 1 cut(s) | 2047 |
| HinfI | GANTC | 6 cut(s) | 575, 1157, 1463, 1546, 1565, 1714 |
| HphI | GGTGA | 6 cut(s) | 553, 570, 786, 837, 1273, 1723 |
| Hpy166II | GTNNAC | 1 cut(s) | 1045 |
| Hpy188I | TCNGA | 5 cut(s) | 574, 1292, 1320, 1704, 2122 |
| Hpy8I | GTNNAC | 1 cut(s) | 1045 |
| Hpy99I | CGWCG | 1 cut(s) | 1688 |
| HpyAV | CCTTC | 6 cut(s) | 133, 301, 1117, 1224, 1702, 1889 |
| HpyCH4III | ACNGT | 3 cut(s) | 411, 1256, 1575 |
| HpyCH4V | TGCA | 9 cut(s) | 353, 898, 1096, 1208, 1382, 1394, 1481, 1621, 1748 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1379, 1388, 1506, 1946, 1985 |
| Hsp92I | GRCGYC | 2 cut(s) | 1174, 1899 |
| HspAI | GCGC | 1 cut(s) | 2047 |
| KpnI | GGTACC | 1 cut(s) | 1772 |
| Ksp22I | TGATCA | 2 cut(s) | 681, 1795 |
| LguI | GCTCTTC | 1 cut(s) | 1259 |
| LmnI | GCTCC | 1 cut(s) | 1544 |
| LweI | GCATC | 3 cut(s) | 1321, 1403, 1927 |
| MaeI | CTAG | 4 cut(s) | 507, 765, 1875, 1976 |
| MaeIII | GTNAC | 5 cut(s) | 1081, 1724, 1870, 1900, 2011 |
| MflI | RGATCY | 1 cut(s) | 1446 |
| MhlI | GDGCHC | 4 cut(s) | 969, 1375, 1666, 2000 |
| MlsI | TGGCCA | 1 cut(s) | 2060 |
| MluCI | AATT | 4 cut(s) | 1054, 1104, 1145, 1981 |
| MluNI | TGGCCA | 1 cut(s) | 2060 |
| MmeI | TCCRAC | 2 cut(s) | 845, 1056 |
| Mox20I | TGGCCA | 1 cut(s) | 2060 |
| MscI | TGGCCA | 1 cut(s) | 2060 |
| MseI | TTAA | 8 cut(s) | 492, 611, 827, 939, 998, 1350, 1365, 1670 |
| MslI | CAYNNNNRTG | 2 cut(s) | 639, 855 |
| Msp20I | TGGCCA | 1 cut(s) | 2060 |
| MspA1I | CMGCKG | 4 cut(s) | 107, 275, 871, 2003 |
| MspCI | CTTAAG | 2 cut(s) | 610, 826 |
| MspR9I | CCNGG | 2 cut(s) | 373, 2062 |
| Mva1269I | GAATGC | 3 cut(s) | 353, 772, 1245 |
| MvaI | CCWGG | 2 cut(s) | 373, 2062 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1379, 1388, 1506, 1946, 1985 |
| NdeI | CATATG | 2 cut(s) | 1330, 1658 |
| NlaIV | GGNNCC | 3 cut(s) | 420, 927, 1770 |
| NmuCI | GTSAC | 3 cut(s) | 1081, 1724, 1900 |
| NspI | RCATGY | 5 cut(s) | 644, 669, 860, 1683, 1732 |
| PagI | TCATGA | 1 cut(s) | 1798 |
| PciI | ACATGT | 3 cut(s) | 665, 856, 1728 |
| PciSI | GCTCTTC | 1 cut(s) | 1259 |
| PctI | GAATGC | 3 cut(s) | 353, 772, 1245 |
| PfeI | GAWTC | 6 cut(s) | 575, 1157, 1463, 1546, 1565, 1714 |
| PscI | ACATGT | 3 cut(s) | 665, 856, 1728 |
| PsiI | TTATAA | 1 cut(s) | 1109 |
| Psp124BI | GAGCTC | 1 cut(s) | 1375 |
| Psp6I | CCWGG | 2 cut(s) | 371, 2060 |
| PspGI | CCWGG | 2 cut(s) | 371, 2060 |
| PspN4I | GGNNCC | 3 cut(s) | 420, 927, 1770 |
| PspPI | GGNCC | 3 cut(s) | 1508, 1531, 2064 |
| PstI | CTGCAG | 2 cut(s) | 1384, 1483 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1166 |
| PsuI | RGATCY | 1 cut(s) | 1446 |
| PvuII | CAGCTG | 3 cut(s) | 107, 275, 2003 |
| RsaI | GTAC | 3 cut(s) | 747, 1552, 1770 |
| RsaNI | GTAC | 3 cut(s) | 746, 1551, 1769 |
| RseI | CAYNNNNRTG | 2 cut(s) | 639, 855 |
| SacI | GAGCTC | 1 cut(s) | 1375 |
| SapI | GCTCTTC | 1 cut(s) | 1259 |
| SaqAI | TTAA | 8 cut(s) | 492, 611, 827, 939, 998, 1350, 1365, 1670 |
| Sau96I | GGNCC | 3 cut(s) | 1508, 1531, 2064 |
| ScrFI | CCNGG | 2 cut(s) | 373, 2062 |
| SduI | GDGCHC | 4 cut(s) | 969, 1375, 1666, 2000 |
| SfaNI | GCATC | 3 cut(s) | 1321, 1403, 1927 |
| SfcI | CTRYAG | 2 cut(s) | 1380, 1479 |
| SinI | GGWCC | 1 cut(s) | 2064 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 639, 855 |
| SmlI | CTYRAG | 2 cut(s) | 610, 826 |
| SmoI | CTYRAG | 2 cut(s) | 610, 826 |
| Sse9I | AATT | 4 cut(s) | 1054, 1104, 1145, 1981 |
| SsiI | CCGC | 4 cut(s) | 726, 749, 871, 1511 |
| SspMI | CTAG | 4 cut(s) | 507, 765, 1875, 1976 |
| SstI | GAGCTC | 1 cut(s) | 1375 |
| StyD4I | CCNGG | 2 cut(s) | 371, 2060 |
| StyI | CCWWGG | 1 cut(s) | 414 |
| TaaI | ACNGT | 3 cut(s) | 411, 1256, 1575 |
| TaqI | TCGA | 4 cut(s) | 382, 947, 1735, 1753 |
| TasI | AATT | 4 cut(s) | 1054, 1104, 1145, 1981 |
| TfiI | GAWTC | 6 cut(s) | 575, 1157, 1463, 1546, 1565, 1714 |
| Tru1I | TTAA | 8 cut(s) | 492, 611, 827, 939, 998, 1350, 1365, 1670 |
| Tru9I | TTAA | 8 cut(s) | 492, 611, 827, 939, 998, 1350, 1365, 1670 |
| TscAI | CASTG | 2 cut(s) | 723, 1909 |
| TseFI | GTSAC | 3 cut(s) | 1081, 1724, 1900 |
| Tsp45I | GTSAC | 3 cut(s) | 1081, 1724, 1900 |
| TspGWI | ACGGA | 2 cut(s) | 378, 1531 |
| TspRI | CASTG | 2 cut(s) | 723, 1909 |
| Vha464I | CTTAAG | 2 cut(s) | 610, 826 |
| VpaK11BI | GGWCC | 1 cut(s) | 2064 |
| XceI | RCATGY | 5 cut(s) | 644, 669, 860, 1683, 1732 |
| XmiI | GTMKAC | 1 cut(s) | 1044 |
| XspI | CTAG | 4 cut(s) | 507, 765, 1875, 1976 |