Rh1CG029700

RNA helicase SDE3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000595
Physical Location & Seq
Reverse (-)
5945422 .. 5948067
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG029700.1

Sequence Viewer

Length: 1935 bp
ATGATGAGGTTGGGGATAATCATTGGGGCTTCAGCAATATTATTGTGGGAATACTTTGAAAATAAGAGACCCACACCATCATCATCATCCCCTGAAACGCCACCTCAGCGGCAGCCAACGTCATCTAATTCTAAACCACATCCAGCCTCCGCAGAACCCCCACCATATTCTTCTAAACCACCTTCATCTCCAGCTTCTTCTAAACCACCTTCATCCCCAGCTTCTTCTCCCCCACCATATTCTTCTAAACCACCTTCATCCCCAGCTTCTTCTAAACCACCTTCATCTGCAGCTTCCCCACAACCACCTGCATCCCCAGCATGTTCTTCTAAACCACCTTCATCTCCAGTTTCCCCACAACGCCCAGCATATTCTTCTAAACCATCTTCATCTCCATCTTCCCCAAAACACCCTCCAACACATTTTTCAATACCATCTCCATCTCCACCTCCATCTCCCCCAAAGTGCCCCCCTGTCTTTAAGTCAGTTCTACGCCCAGCCTCCTCTTCCTCAAATAATGATGATATAAGTCAAAACCAACAATATGGGAAGAGAACAGCTTATGTGTGTGTTGAAGAGGATCCATTACCTGTATTCATGATTCCTGAGGATGTCGAAGCCTTGATCAAGAAAGAAATTGCGCCCAAAGTTCTGAATCGCCCATTATCTCCCACAACATACAAGGACTACTTTGCCGCTCTCTTATATTCTGAAGATTTCTACTTGGAGAAATGGAGTGATTTCCTTTTGAAGGGTGTGACATTAGCGTTGGATGAAAGTTCAATTTATAAAAACCGGAAAAAGGAAGCACTTTATAAAAATCGGAAAAAGGAAGATAAGGAAGACAAAACCTTTGTAGCATTTGAGCTTGATCGTGTTCCTGAGGAACGACCATTCCTCTTGTCAAGGGACTTGGTCCTTGCACGACCAGTGGGGAAGAGTTCTACTGAGCCCTTTAAGGGCCCCATCCATAAAGTTGTTGGGAGCAATCGCGTTTTGGTTGAATTTGAGGATGGCTTTTATTCTTATCATCATTCCAACAAAAAATATGATATCAGCTTCTCATACAATAGAGTTTGTTTGAAAAGAGCCCACCATGCAGTAAAAGCTGCATCAGATGCCTTGTTTCAGAACTTCCTCTTCCCTGACTGTGACTCACGAGCAAGCATTCCTGCTGCACCAGCTCTGCTTTCTACTACCTATCATAAGCTAGATCAAGAGCAACGTTCTGCAGTCGGACATATCTTAAGGATTCAGGGCTCACCACCTTATGTAGTAACTGGTCCAGACTGTGAAGGCAAATCTTTTGCAAATTTAAGAGAACCTTCAAGAACTGGAGTGGTTGTTAGTGAAGCAGTATACCAATTATGTCGGAAGTCACCAGAGTATCGCATTCTTATCTGTGCACCTACTAACAGCTGCTGCGATATGCTGATGAGAAGCTTGGTGAAGGTGATTCCAGAGTCTACTATGTTTCGTGCCAATGCTGCATTCCGAGACAGAGATGAGGTACCTGAGGACATCCTCCATTTATCCCTTTACAAAGAGTCTGGTTTTTCTTGTCCTGCAATAGAGAAACTCCGGGAATACAAGGTGATTTTCTCAACTTTCATGAGTAGCTTCCGACTACATGATAAAGGCATAGCTGCTGGACATTTTAGCCACATTTTTCTGGTGGATGCTTCATCTGCTATTGAACCGGAAACATTGGTCGCCCTGACTAACTTTGCTGTCAAGGCCACTAGTGTTATAGTTACTGGTAATCATGGAAATAGTCCGCTCTGGGTTCGCGCTGACATTGCAAGGAAAAAGGGACTCAAGATTTCATACTTTGAACGACTCTGCAAGCTCAGGCCATATAGAAGCCCCAGTCCAATGTTCATCACACAACTAGACCTGAACCAAAAGTCAGAGTACCAAACAAGACCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

644

Amino Acids

71.33

Weight (kDa)

9.23

Isoelectric Point (pI)

69.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOV-10_beta-barrel PF21634 278 - 354 3.4e-09 Helicase MOV-10, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 789, 816
AarI CACCTGC 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 316
Acc65I GGTACC 1 cut(s) 1510
AccB1I GGYRCC 1 cut(s) 1510
AccBSI CCGCTC 2 cut(s) 698, 1780
AccI GTMKAC 2 cut(s) 1359, 1466
AccII CGCG 2 cut(s) 993, 1791
AciI CCGC 4 cut(s) 109, 150, 696, 1778
AclI AACGTT 1 cut(s) 1225
AclWI GGATC 2 cut(s) 575, 588
AcsI RAATTY 2 cut(s) 1004, 1312
AcuI CTGAAG 2 cut(s) 15, 732
AfaI GTAC 2 cut(s) 1512, 1916
AfiI CCNNNNNNNGG 3 cut(s) 751, 802, 959
AflII CTTAAG 1 cut(s) 1246
AhlI ACTAGT 1 cut(s) 1742
AjuI GAANNNNNNNTTGG 4 cut(s) 409, 441, 1475, 1507
AloI GAACNNNNNNTCC 2 cut(s) 879, 911
Alw21I GWGCWC 1 cut(s) 1408
Alw26I GTCTC 2 cut(s) 61, 1491
Alw44I GTGCAC 1 cut(s) 1404
AlwI GGATC 2 cut(s) 575, 588
AlwNI CAGNNNCTG 1 cut(s) 1422
AoxI GGCC 3 cut(s) 961, 1737, 1853
ApaI GGGCCC 1 cut(s) 965
ApaLI GTGCAC 1 cut(s) 1404
ApeKI GCWGC 8 cut(s) 112, 290, 1109, 1175, 1419, 1422, 1487, 1646
ApoI RAATTY 2 cut(s) 1004, 1312
ArsI GACNNNNNNTTYG 2 cut(s) 836, 868
Asp718I GGTACC 1 cut(s) 1510
AspLEI GCGC 2 cut(s) 643, 1793
AspS9I GGNCC 4 cut(s) 916, 961, 962, 1283
AsuC2I CCSGG 1 cut(s) 1583
AsuHPI GGTGA 5 cut(s) 1254, 1371, 1459, 1465, 1606
AvaII GGWCC 2 cut(s) 916, 1283
AxyI CCTNAGG 3 cut(s) 606, 882, 1515
BaeGI GKGCMC 3 cut(s) 470, 965, 1408
BaeI ACNNNNGTAYC 2 cut(s) 1370, 1403
BamHI GGATCC 1 cut(s) 580
BanI GGYRCC 1 cut(s) 1510
BanII GRGCYC 4 cut(s) 954, 965, 1093, 1262
BauI CACGAG 1 cut(s) 1158
BbsI GAAGAC 1 cut(s) 849
Bbv12I GWGCWC 1 cut(s) 1408
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 8 cut(s) 124, 302, 1096, 1162, 1406, 1409, 1474, 1633
BccI CCATC 8 cut(s) 85, 391, 403, 442, 448, 460, 974, 1007
BclI TGATCA 1 cut(s) 624
BcnI CCSGG 1 cut(s) 1583
BcoDI GTCTC 2 cut(s) 61, 1491
BcuI ACTAGT 1 cut(s) 1742
BfaI CTAG 3 cut(s) 1211, 1743, 1892
BfmI CTRYAG 2 cut(s) 288, 1230
BfrI CTTAAG 1 cut(s) 1246
BfuAI ACCTGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 1583
Bme18I GGWCC 2 cut(s) 916, 1283
BmgT120I GGNCC 4 cut(s) 916, 961, 962, 1283
BmiI GGNNCC 4 cut(s) 582, 963, 964, 1512
BmrFI CCNGG 1 cut(s) 1583
BmrI ACTGGG 1 cut(s) 1863
BmsI GCATC 4 cut(s) 320, 1108, 1121, 1669
BmuI ACTGGG 1 cut(s) 1863
BpiI GAAGAC 1 cut(s) 849
BpmI CTGGAG 3 cut(s) 174, 330, 1356
Bpu10I CCTNAGC 2 cut(s) 105, 1850
BpuEI CTTGAG 1 cut(s) 1802
BpuMI CCSGG 1 cut(s) 1583
BsaI GGTCTC 1 cut(s) 61
BsaWI WCCGGW 2 cut(s) 795, 1699
BsaXI ACNNNNNCTCC 2 cut(s) 1329, 1359
Bsc4I CCNNNNNNNGG 3 cut(s) 751, 802, 959
Bse1I ACTGG 6 cut(s) 347, 929, 1285, 1339, 1762, 1869
Bse21I CCTNAGG 3 cut(s) 606, 882, 1515
Bse3DI GCAATG 1 cut(s) 1797
BseLI CCNNNNNNNGG 3 cut(s) 751, 802, 959
BseMI GCAATG 1 cut(s) 1797
BseMII CTCAG 6 cut(s) 119, 597, 873, 939, 1506, 1864
BseNI ACTGG 6 cut(s) 347, 929, 1285, 1339, 1762, 1869
BseRI GAGGAG 1 cut(s) 493
BseSI GKGCMC 3 cut(s) 470, 965, 1408
BseXI GCAGC 8 cut(s) 124, 302, 1096, 1162, 1406, 1409, 1474, 1633
BseYI CCCAGC 5 cut(s) 217, 262, 316, 364, 496
BsgI GTGCAG 1 cut(s) 1161
Bsh1236I CGCG 2 cut(s) 993, 1791
BshFI GGCC 3 cut(s) 963, 1739, 1855
BshNI GGYRCC 1 cut(s) 1510
BsiHKAI GWGCWC 1 cut(s) 1408
BsiSI CCGG 3 cut(s) 796, 1582, 1700
BslFI GGGAC 2 cut(s) 923, 1827
BslI CCNNNNNNNGG 3 cut(s) 751, 802, 959
BsmAI GTCTC 2 cut(s) 61, 1491
BsmFI GGGAC 2 cut(s) 923, 1827
BsmI GAATGC 3 cut(s) 1167, 1392, 1490
BsnI GGCC 3 cut(s) 963, 1739, 1855
Bso31I GGTCTC 1 cut(s) 61
Bsp120I GGGCCC 1 cut(s) 961
Bsp1286I GDGCHC 6 cut(s) 470, 954, 965, 1093, 1262, 1408
Bsp143I GATC 4 cut(s) 580, 624, 871, 1213
BspACI CCGC 4 cut(s) 109, 150, 696, 1778
BspANI GGCC 3 cut(s) 963, 1739, 1855
BspCNI CTCAG 6 cut(s) 118, 598, 874, 940, 1507, 1863
BspFNI CGCG 2 cut(s) 993, 1791
BspHI TCATGA 2 cut(s) 597, 1611
BspLI GGNNCC 4 cut(s) 582, 963, 964, 1512
BspMAI CTGCAG 2 cut(s) 292, 1234
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 2 cut(s) 575, 588
BspT107I GGYRCC 1 cut(s) 1510
BspTI CTTAAG 1 cut(s) 1246
BspTNI GGTCTC 1 cut(s) 61
BsrBI CCGCTC 2 cut(s) 698, 1780
BsrDI GCAATG 1 cut(s) 1797
BsrI ACTGG 6 cut(s) 347, 929, 1285, 1339, 1762, 1869
BssMI GATC 4 cut(s) 580, 624, 871, 1213
BssNAI GTATAC 1 cut(s) 1360
BssSI CACGAG 1 cut(s) 1158
Bst1107I GTATAC 1 cut(s) 1360
Bst2BI CACGAG 1 cut(s) 1158
Bst4CI ACNGT 2 cut(s) 1151, 1292
Bst6I CTCTTC 5 cut(s) 511, 545, 570, 932, 1145
BstAFI CTTAAG 1 cut(s) 1246
BstAPI GCANNNNNTGC 1 cut(s) 1118
BstC8I GCNNGC 2 cut(s) 1165, 1847
BstDEI CTNAG 6 cut(s) 105, 606, 882, 948, 1515, 1850
BstENI CCTNNNNNAGG 1 cut(s) 749
BstFNI CGCG 2 cut(s) 993, 1791
BstHHI GCGC 2 cut(s) 643, 1793
BstKTI GATC 4 cut(s) 583, 627, 874, 1216
BstMAI GTCTC 2 cut(s) 61, 1491
BstMBI GATC 4 cut(s) 580, 624, 871, 1213
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 1581
BstSFI CTRYAG 2 cut(s) 288, 1230
BstSLI GKGCMC 3 cut(s) 470, 965, 1408
BstUI CGCG 2 cut(s) 993, 1791
BstV1I GCAGC 8 cut(s) 124, 302, 1096, 1162, 1406, 1409, 1474, 1633
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 1 cut(s) 580
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 1 cut(s) 580
BstZ17I GTATAC 1 cut(s) 1360
Bsu36I CCTNAGG 3 cut(s) 606, 882, 1515
BsuRI GGCC 3 cut(s) 963, 1739, 1855
BtsIMutI CAGTG 1 cut(s) 936
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 1165, 1847
CaiI CAGNNNCTG 1 cut(s) 1422
CciI TCATGA 2 cut(s) 597, 1611
CfoI GCGC 2 cut(s) 643, 1793
Cfr13I GGNCC 4 cut(s) 916, 961, 962, 1283
Csp6I GTAC 2 cut(s) 1511, 1915
CviAII CATG 6 cut(s) 321, 598, 1097, 1612, 1631, 1766
CviQI GTAC 2 cut(s) 1511, 1915
DdeI CTNAG 6 cut(s) 105, 606, 882, 948, 1515, 1850
DpnI GATC 4 cut(s) 582, 626, 873, 1215
DpnII GATC 4 cut(s) 580, 624, 871, 1213
Eam1104I CTCTTC 5 cut(s) 511, 545, 570, 932, 1145
EarI CTCTTC 5 cut(s) 511, 545, 570, 932, 1145
Eco24I GRGCYC 4 cut(s) 954, 965, 1093, 1262
Eco31I GGTCTC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 1054
Eco47I GGWCC 2 cut(s) 916, 1283
Eco57I CTGAAG 2 cut(s) 15, 732
Eco81I CCTNAGG 3 cut(s) 606, 882, 1515
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoO109I RGGNCCY 2 cut(s) 961, 962
EcoRV GATATC 1 cut(s) 1054
EcoT38I GRGCYC 4 cut(s) 954, 965, 1093, 1262
FaeI CATG 6 cut(s) 324, 601, 1100, 1615, 1634, 1769
FalI AAGNNNNNCTT 4 cut(s) 674, 706, 1309, 1341
FaqI GGGAC 2 cut(s) 923, 1827
FatI CATG 6 cut(s) 320, 597, 1096, 1611, 1630, 1765
FbaI TGATCA 1 cut(s) 624
FblI GTMKAC 2 cut(s) 1359, 1466
FriOI GRGCYC 4 cut(s) 954, 965, 1093, 1262
FspBI CTAG 3 cut(s) 1211, 1743, 1892
GlaI GCGC 2 cut(s) 642, 1792
GsaI CCCAGC 5 cut(s) 221, 266, 320, 368, 500
GsuI CTGGAG 3 cut(s) 174, 330, 1356
HaeIII GGCC 3 cut(s) 963, 1739, 1855
HapII CCGG 3 cut(s) 796, 1582, 1700
HhaI GCGC 2 cut(s) 643, 1793
Hin1II CATG 6 cut(s) 324, 601, 1100, 1615, 1634, 1769
Hin6I GCGC 2 cut(s) 641, 1791
HinP1I GCGC 2 cut(s) 641, 1791
HindIII AAGCTT 1 cut(s) 1441
HinfI GANTC 9 cut(s) 601, 655, 1154, 1252, 1456, 1463, 1547, 1815, 1839
HpaII CCGG 3 cut(s) 796, 1582, 1700
HphI GGTGA 5 cut(s) 1254, 1371, 1459, 1465, 1606
Hpy166II GTNNAC 3 cut(s) 1360, 1406, 1467
Hpy8I GTNNAC 3 cut(s) 1360, 1406, 1467
HpyAV CCTTC 9 cut(s) 192, 219, 264, 291, 348, 745, 1289, 1335, 1444
HpyCH4III ACNGT 2 cut(s) 1151, 1292
HpyCH4IV ACGT 2 cut(s) 119, 1225
HpyF3I CTNAG 6 cut(s) 105, 606, 882, 948, 1515, 1850
HpySE526I ACGT 2 cut(s) 119, 1225
Hsp92II CATG 6 cut(s) 324, 601, 1100, 1615, 1634, 1769
HspAI GCGC 2 cut(s) 641, 1791
KpnI GGTACC 1 cut(s) 1514
Ksp22I TGATCA 1 cut(s) 624
Kzo9I GATC 4 cut(s) 580, 624, 871, 1213
LmnI GCTCC 1 cut(s) 984
Lsp1109I GCAGC 8 cut(s) 124, 302, 1096, 1162, 1406, 1409, 1474, 1633
LweI GCATC 4 cut(s) 320, 1108, 1121, 1669
MaeI CTAG 3 cut(s) 1211, 1743, 1892
MaeII ACGT 2 cut(s) 119, 1225
MaeIII GTNAC 5 cut(s) 757, 1151, 1276, 1377, 1753
MalI GATC 4 cut(s) 582, 626, 873, 1215
MbiI CCGCTC 2 cut(s) 698, 1780
MboI GATC 4 cut(s) 580, 624, 871, 1213
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 6 cut(s) 470, 954, 965, 1093, 1262, 1408
MluCI AATT 6 cut(s) 127, 636, 783, 1004, 1312, 1364
MlyI GAGTC 5 cut(s) 1148, 1472, 1556, 1809, 1833
MmeI TCCRAC 6 cut(s) 440, 750, 1062, 1216, 1352, 1648
MseI TTAA 4 cut(s) 480, 957, 1247, 1316
MspA1I CMGCKG 2 cut(s) 109, 1419
MspCI CTTAAG 1 cut(s) 1246
MspI CCGG 3 cut(s) 796, 1582, 1700
MspR9I CCNGG 1 cut(s) 1583
Mva1269I GAATGC 3 cut(s) 1167, 1392, 1490
MvnI CGCG 2 cut(s) 993, 1791
NciI CCSGG 1 cut(s) 1583
NdeII GATC 4 cut(s) 580, 624, 871, 1213
NlaIII CATG 6 cut(s) 324, 601, 1100, 1615, 1634, 1769
NlaIV GGNNCC 4 cut(s) 582, 963, 964, 1512
NmuCI GTSAC 3 cut(s) 757, 1151, 1377
NspI RCATGY 1 cut(s) 324
PagI TCATGA 2 cut(s) 597, 1611
PaqCI CACCTGC 1 cut(s) 316
PctI GAATGC 3 cut(s) 1167, 1392, 1490
PfeI GAWTC 4 cut(s) 601, 655, 1252, 1456
PflFI GACNNNGTC 1 cut(s) 914
PfoI TCCNGGA 1 cut(s) 1581
PleI GAGTC 5 cut(s) 1148, 1471, 1555, 1809, 1833
PpsI GAGTC 5 cut(s) 1148, 1471, 1555, 1809, 1833
PsiI TTATAA 2 cut(s) 789, 816
Psp1406I AACGTT 1 cut(s) 1225
PspFI CCCAGC 5 cut(s) 217, 262, 316, 364, 496
PspN4I GGNNCC 4 cut(s) 582, 963, 964, 1512
PspOMI GGGCCC 1 cut(s) 961
PspPI GGNCC 4 cut(s) 916, 961, 962, 1283
PstI CTGCAG 2 cut(s) 292, 1234
PstNI CAGNNNCTG 1 cut(s) 1422
PsuI RGATCY 1 cut(s) 580
PsyI GACNNNGTC 1 cut(s) 914
PvuII CAGCTG 1 cut(s) 1419
RsaI GTAC 2 cut(s) 1512, 1916
RsaNI GTAC 2 cut(s) 1511, 1915
SaqAI TTAA 4 cut(s) 480, 957, 1247, 1316
Sau3AI GATC 4 cut(s) 580, 624, 871, 1213
Sau96I GGNCC 4 cut(s) 916, 961, 962, 1283
SchI GAGTC 5 cut(s) 1148, 1472, 1556, 1809, 1833
ScrFI CCNGG 1 cut(s) 1583
SduI GDGCHC 6 cut(s) 470, 954, 965, 1093, 1262, 1408
SfaNI GCATC 4 cut(s) 320, 1108, 1121, 1669
SfcI CTRYAG 2 cut(s) 288, 1230
SinI GGWCC 2 cut(s) 916, 1283
SmlI CTYRAG 2 cut(s) 1246, 1817
SmoI CTYRAG 2 cut(s) 1246, 1817
SpeI ACTAGT 1 cut(s) 1742
Sse9I AATT 6 cut(s) 127, 636, 783, 1004, 1312, 1364
SsiI CCGC 4 cut(s) 109, 150, 696, 1778
SspI AATATT 1 cut(s) 39
SspMI CTAG 3 cut(s) 1211, 1743, 1892
StyD4I CCNGG 1 cut(s) 1581
TaaI ACNGT 2 cut(s) 1151, 1292
TaiI ACGT 2 cut(s) 122, 1228
TaqI TCGA 1 cut(s) 615
TasI AATT 6 cut(s) 127, 636, 783, 1004, 1312, 1364
TauI GCSGC 2 cut(s) 112, 698
TfiI GAWTC 4 cut(s) 601, 655, 1252, 1456
Tru1I TTAA 4 cut(s) 480, 957, 1247, 1316
Tru9I TTAA 4 cut(s) 480, 957, 1247, 1316
TscAI CASTG 1 cut(s) 936
TseFI GTSAC 3 cut(s) 757, 1151, 1377
TseI GCWGC 8 cut(s) 112, 290, 1109, 1175, 1419, 1422, 1487, 1646
Tsp45I GTSAC 3 cut(s) 757, 1151, 1377
TspRI CASTG 1 cut(s) 936
Tth111I GACNNNGTC 1 cut(s) 914
Vha464I CTTAAG 1 cut(s) 1246
VneI GTGCAC 1 cut(s) 1404
VpaK11BI GGWCC 2 cut(s) 916, 1283
XagI CCTNNNNNAGG 1 cut(s) 749
XapI RAATTY 2 cut(s) 1004, 1312
XceI RCATGY 1 cut(s) 324
XcmI CCANNNNNNNNNTGG 1 cut(s) 977
XmiI GTMKAC 2 cut(s) 1359, 1466
XspI CTAG 3 cut(s) 1211, 1743, 1892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.