Rmu_sc0001753.1_g000015

RNA helicase SDE3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001753.1
OG0000595
Physical Location & Seq
Forward (+)
84687 .. 85472
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001753.1_g000015.1.cds

Sequence Viewer

Length: 786 bp
atgtcatgcttttttgatcttctgagatgccttctgtgttgttctgatgagcctgattttcatcgaacttcttcctgttatacaagaaaccgttttgttgataccgctgaccttcactatgagtatgatcccattcccagtcccagtcccaggagcagccatttgccaacttcaacttcaacttcatttcagcctcagtactattctcgtgattttgttaattctctacttcattctcctgcttcacctcccaccacctcctcttataaaccaccacatcaatcaacaacaacaccaccagcatctcaatattattcatctaataacaaatcgccggtcacttcttttatcagttcatcttcatcatctaaaccaaccctatcgtctactattaaaccatcttcatcatcctctaagaagccacctcagccaacatcatctaattctaaaccaaatccatcctcccaaaaacctccatcacattcttcatctccatcttctccaaagctccctcctgtctacaagtcaattctatccccagcctcctcctcctcctccttctccccaaatgttacaagtcaacaccaacaagacgggaagaaaacagcttatgtgtgtgttgaagaggatccattacctgtattcatgattcctgaggatatcaaagccttgatcaagaacaaaattgtgcccaaagttctgattcgcccattatcccccacaacatacaaggactactttgccgctctcttatattctgaagatttctacttggaggtaccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.72

Weight (kDa)

8.78

Isoelectric Point (pI)

81.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
Acc65I GGTACC 1 cut(s) 778
AccB1I GGYRCC 1 cut(s) 778
AccBSI CCGCTC 1 cut(s) 746
AccI GTMKAC 2 cut(s) 386, 519
AciI CCGC 2 cut(s) 105, 744
AclWI GGATC 3 cut(s) 122, 623, 636
AcuI CTGAAG 1 cut(s) 780
AfaI GTAC 2 cut(s) 200, 780
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 3 cut(s) 174, 180, 623
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 160, 192
AluBI AGCT 2 cut(s) 508, 608
AluI AGCT 2 cut(s) 508, 608
AlwI GGATC 3 cut(s) 122, 623, 636
ApeKI GCWGC 1 cut(s) 156
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
Asp700I GAANNNNTTC 1 cut(s) 70
Asp718I GGTACC 1 cut(s) 778
AsuHPI GGTGA 1 cut(s) 237
AxyI CCTNAGG 1 cut(s) 654
BaeGI GKGCMC 1 cut(s) 693
BamHI GGATCC 1 cut(s) 628
BanI GGYRCC 1 cut(s) 778
BauI CACGAG 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 168
BccI CCATC 4 cut(s) 406, 466, 484, 502
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 672
BisI GCNGC 2 cut(s) 157, 744
BlsI GCNGC 2 cut(s) 158, 745
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 630, 780
BmrFI CCNGG 1 cut(s) 151
BmrI ACTGGG 2 cut(s) 132, 138
BmsI GCATC 2 cut(s) 17, 311
BmuI ACTGGG 2 cut(s) 132, 138
Bpu10I CCTNAGC 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 2 cut(s) 138, 144
Bse21I CCTNAGG 1 cut(s) 654
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 407, 458
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 4 cut(s) 14, 209, 440, 645
BseNI ACTGG 2 cut(s) 138, 144
BseRI GAGGAG 5 cut(s) 250, 535, 538, 541, 544
BseSI GKGCMC 1 cut(s) 693
BseXI GCAGC 1 cut(s) 168
BseYI CCCAGC 1 cut(s) 538
BshNI GGYRCC 1 cut(s) 778
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 2 cut(s) 126, 132
BslI CCNNNNNNNGG 1 cut(s) 150
BsmFI GGGAC 2 cut(s) 126, 132
Bsp1286I GDGCHC 1 cut(s) 693
Bsp143I GATC 4 cut(s) 16, 127, 628, 672
BspACI CCGC 2 cut(s) 105, 744
BspCNI CTCAG 4 cut(s) 15, 208, 439, 646
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 2 cut(s) 630, 780
BspPI GGATC 3 cut(s) 122, 623, 636
BspT107I GGYRCC 1 cut(s) 778
BsrBI CCGCTC 1 cut(s) 746
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 2 cut(s) 138, 144
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 4 cut(s) 16, 127, 628, 672
BssSI CACGAG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 618
BstDEI CTNAG 5 cut(s) 23, 195, 414, 426, 654
BstF5I GGATG 2 cut(s) 407, 458
BstKTI GATC 4 cut(s) 19, 130, 631, 675
BstMBI GATC 4 cut(s) 16, 127, 628, 672
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstSLI GKGCMC 1 cut(s) 693
BstV1I GCAGC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
Bsu36I CCTNAGG 1 cut(s) 654
BtsCI GGATG 2 cut(s) 407, 458
CciI TCATGA 1 cut(s) 645
Cfr10I RCCGGY 1 cut(s) 334
Csp6I GTAC 2 cut(s) 199, 779
CviAII CATG 2 cut(s) 6, 646
CviJI RGCY 9 cut(s) 52, 159, 193, 421, 430, 508, 542, 608, 668
CviKI_1 RGCY 9 cut(s) 52, 159, 193, 421, 430, 508, 542, 608, 668
CviQI GTAC 2 cut(s) 199, 779
DdeI CTNAG 5 cut(s) 23, 195, 414, 426, 654
DpnI GATC 4 cut(s) 18, 129, 630, 674
DpnII GATC 4 cut(s) 16, 127, 628, 672
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco32I GATATC 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 780
Eco81I CCTNAGG 1 cut(s) 654
EcoRII CCWGG 1 cut(s) 149
EcoRV GATATC 1 cut(s) 661
FaeI CATG 2 cut(s) 9, 649
FaiI YATR 9 cut(s) 7, 81, 120, 126, 267, 612, 647, 727, 754
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 2 cut(s) 126, 132
FatI CATG 2 cut(s) 5, 645
FbaI TGATCA 1 cut(s) 672
FblI GTMKAC 2 cut(s) 386, 519
Fnu4HI GCNGC 2 cut(s) 157, 744
FokI GGATG 2 cut(s) 394, 445
Fsp4HI GCNGC 2 cut(s) 157, 744
GluI GCNGC 2 cut(s) 157, 744
GsaI CCCAGC 1 cut(s) 542
HapII CCGG 1 cut(s) 335
Hin1II CATG 2 cut(s) 9, 649
HincII GTYRAC 1 cut(s) 581
HindII GTYRAC 1 cut(s) 581
HinfI GANTC 2 cut(s) 649, 703
HpaII CCGG 1 cut(s) 335
HphI GGTGA 1 cut(s) 237
Hpy166II GTNNAC 3 cut(s) 387, 520, 581
Hpy188I TCNGA 4 cut(s) 24, 46, 702, 760
Hpy188III TCNNGA 4 cut(s) 209, 646, 653, 676
Hpy8I GTNNAC 3 cut(s) 387, 520, 581
HpyAV CCTTC 3 cut(s) 41, 122, 568
HpyCH4III ACNGT 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 5 cut(s) 23, 195, 414, 426, 654
Hsp92II CATG 2 cut(s) 9, 649
KpnI GGTACC 1 cut(s) 782
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 4 cut(s) 16, 127, 628, 672
LmnI GCTCC 2 cut(s) 153, 513
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 2 cut(s) 17, 311
MaeIII GTNAC 2 cut(s) 337, 571
MalI GATC 4 cut(s) 18, 129, 630, 674
MbiI CCGCTC 1 cut(s) 746
MboI GATC 4 cut(s) 16, 127, 628, 672
MboII GAAGA 9 cut(s) 11, 63, 351, 393, 477, 489, 610, 635, 773
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 4 cut(s) 220, 442, 528, 684
MroXI GAANNNNTTC 1 cut(s) 70
MseI TTAA 2 cut(s) 219, 393
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 427
NdeII GATC 4 cut(s) 16, 127, 628, 672
NlaIII CATG 2 cut(s) 9, 649
NlaIV GGNNCC 2 cut(s) 630, 780
NmuCI GTSAC 1 cut(s) 337
PagI TCATGA 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 649, 703
PkrI GCNGC 2 cut(s) 158, 745
PsiI TTATAA 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 538
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 630, 780
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 2 cut(s) 200, 780
RsaNI GTAC 2 cut(s) 199, 779
SaqAI TTAA 2 cut(s) 219, 393
SatI GCNGC 2 cut(s) 157, 744
Sau3AI GATC 4 cut(s) 16, 127, 628, 672
ScaI AGTACT 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 693
SetI ASST 9 cut(s) 114, 250, 260, 427, 475, 510, 610, 640, 780
SfaNI GCATC 2 cut(s) 17, 311
Sse9I AATT 4 cut(s) 220, 442, 528, 684
SsiI CCGC 2 cut(s) 105, 744
SspI AATATT 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 64
TasI AATT 4 cut(s) 220, 442, 528, 684
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 2 cut(s) 649, 703
Tru1I TTAA 2 cut(s) 219, 393
Tru9I TTAA 2 cut(s) 219, 393
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 9 cut(s) 50, 174, 221, 306, 345, 351, 393, 477, 634
XmiI GTMKAC 2 cut(s) 386, 519
XmnI GAANNNNTTC 1 cut(s) 70
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.