Rmu_co8177450.1_g000001

RNA helicase SDE3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8177450.1
OG0000595
Physical Location & Seq
Forward (+)
1 .. 639
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8177450.1_g000001.1.cds

Sequence Viewer

Length: 435 bp
cactcacatgtagccaatcagcgggggaagtcatattattcatgggtgcaaaagggttcattacctatatacaaggttcccaagaacattaaagcttcgatcaagaaagatagagtgcccaaagttcttgaccagccattgtctcccttaacctataagaactactttgctgctctcttatatgctgaggaagtctacttggagaaatggaaagattatcaaatgttggaagtgacattgaacttgcaagaagcaattataaaggctaaaaagaaggatgaaaaaatctttgtaaaattgaagttagattcagttcctgagagacgcccattccttttatcaagggattttgtctatgcaagaccttcgggtagggatgttcagccatttgagtatgcaagtccaggtcaacaaggtgtaagcttttatgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.8

Weight (kDa)

9.65

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccI GTMKAC 1 cut(s) 195
AciI CCGC 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 21
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 2 cut(s) 241, 301
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 2 cut(s) 95, 423
AluI AGCT 2 cut(s) 95, 423
Alw26I GTCTC 2 cut(s) 147, 316
AlwNI CAGNNNCTG 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BciT130I CCWGG 1 cut(s) 405
BcoDI GTCTC 2 cut(s) 147, 316
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 405
BseGI GGATG 2 cut(s) 283, 382
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 177, 309
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 2 cut(s) 147, 316
BsmBI CGTCTC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 1 cut(s) 22
BspCNI CTCAG 2 cut(s) 178, 310
BspLI GGNNCC 1 cut(s) 78
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 405
BstACI GRCGYC 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 186, 318
BstF5I GGATG 2 cut(s) 283, 382
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 2 cut(s) 147, 316
BstMBI GATC 1 cut(s) 99
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 403
BstSLI GKGCMC 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 157
BtsCI GGATG 2 cut(s) 283, 382
CaiI CAGNNNCTG 1 cut(s) 317
CseI GACGC 1 cut(s) 333
CviAII CATG 2 cut(s) 8, 42
CviJI RGCY 6 cut(s) 14, 95, 136, 266, 385, 423
CviKI_1 RGCY 6 cut(s) 14, 95, 136, 266, 385, 423
DdeI CTNAG 2 cut(s) 186, 318
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 403
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 2 cut(s) 11, 45
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 2 cut(s) 7, 41
FauI CCCGC 1 cut(s) 15
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 2 cut(s) 290, 389
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
HgaI GACGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 2 cut(s) 11, 45
HincII GTYRAC 1 cut(s) 410
HindII GTYRAC 1 cut(s) 410
HindIII AAGCTT 2 cut(s) 93, 421
HinfI GANTC 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 196, 410
Hpy188III TCNNGA 3 cut(s) 103, 128, 317
Hpy8I GTNNAC 2 cut(s) 196, 410
HpyAV CCTTC 2 cut(s) 268, 375
HpyCH4V TGCA 4 cut(s) 49, 247, 359, 398
HpyF3I CTNAG 2 cut(s) 186, 318
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 2 cut(s) 11, 45
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 4 cut(s) 146, 330, 390, 417
Lsp1109I GCAGC 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 2 cut(s) 255, 296
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 1 cut(s) 181
MseI TTAA 2 cut(s) 90, 149
MslI CAYNNNNRTG 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
NdeII GATC 1 cut(s) 99
NlaIII CATG 2 cut(s) 11, 45
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 11
PciI ACATGT 1 cut(s) 7
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 172
PscI ACATGT 1 cut(s) 7
PsiI TTATAA 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 6
SaqAI TTAA 2 cut(s) 90, 149
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 120
SetI ASST 8 cut(s) 67, 78, 97, 155, 367, 409, 418, 425
SmiMI CAYNNNNRTG 1 cut(s) 6
Sse9I AATT 2 cut(s) 255, 296
SsiI CCGC 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 403
TaqI TCGA 1 cut(s) 98
TasI AATT 2 cut(s) 255, 296
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 2 cut(s) 90, 149
Tru9I TTAA 2 cut(s) 90, 149
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 30, 48, 294
XceI RCATGY 1 cut(s) 11
XmiI GTMKAC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.