RNA helicase SDE3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SWIM | PF04434 | 63 - 86 | 2.7e-08 | SWIM zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 73 |
| AcoI | YGGCCR | 1 cut(s) | 364 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 362 |
| AgsI | TTSAA | 1 cut(s) | 274 |
| AhlI | ACTAGT | 1 cut(s) | 95 |
| AluBI | AGCT | 2 cut(s) | 139, 287 |
| AluI | AGCT | 2 cut(s) | 139, 287 |
| Alw21I | GWGCWC | 2 cut(s) | 124, 141 |
| AlwI | GGATC | 1 cut(s) | 73 |
| AoxI | GGCC | 3 cut(s) | 196, 333, 364 |
| ApeKI | GCWGC | 1 cut(s) | 287 |
| AspS9I | GGNCC | 1 cut(s) | 196 |
| AsuHPI | GGTGA | 1 cut(s) | 25 |
| BalI | TGGCCA | 1 cut(s) | 366 |
| BanII | GRGCYC | 1 cut(s) | 141 |
| Bbv12I | GWGCWC | 2 cut(s) | 124, 141 |
| BbvI | GCAGC | 1 cut(s) | 274 |
| BccI | CCATC | 3 cut(s) | 4, 125, 263 |
| BciVI | GTATCC | 1 cut(s) | 231 |
| BcuI | ACTAGT | 1 cut(s) | 95 |
| BfaI | CTAG | 2 cut(s) | 69, 96 |
| BfmI | CTRYAG | 1 cut(s) | 186 |
| BfuI | GTATCC | 1 cut(s) | 231 |
| BglII | AGATCT | 1 cut(s) | 190 |
| BisI | GCNGC | 1 cut(s) | 288 |
| BlsI | GCNGC | 1 cut(s) | 289 |
| BmgT120I | GGNCC | 1 cut(s) | 196 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 362 |
| Bse1I | ACTGG | 1 cut(s) | 160 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 362 |
| BseNI | ACTGG | 1 cut(s) | 160 |
| BseXI | GCAGC | 1 cut(s) | 274 |
| BshFI | GGCC | 3 cut(s) | 198, 335, 366 |
| BsiHKAI | GWGCWC | 2 cut(s) | 124, 141 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 362 |
| BsnI | GGCC | 3 cut(s) | 198, 335, 366 |
| Bsp1286I | GDGCHC | 2 cut(s) | 124, 141 |
| Bsp143I | GATC | 4 cut(s) | 65, 81, 150, 190 |
| BspANI | GGCC | 3 cut(s) | 198, 335, 366 |
| BspPI | GGATC | 1 cut(s) | 73 |
| BsrI | ACTGG | 1 cut(s) | 160 |
| BssMI | GATC | 4 cut(s) | 65, 81, 150, 190 |
| Bst6I | CTCTTC | 1 cut(s) | 25 |
| BstKTI | GATC | 4 cut(s) | 68, 84, 153, 193 |
| BstMBI | GATC | 4 cut(s) | 65, 81, 150, 190 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 260 |
| BstNSI | RCATGY | 1 cut(s) | 185 |
| BstSFI | CTRYAG | 1 cut(s) | 186 |
| BstV1I | GCAGC | 1 cut(s) | 274 |
| BstX2I | RGATCY | 2 cut(s) | 65, 190 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 155 |
| BstYI | RGATCY | 2 cut(s) | 65, 190 |
| BsuI | GTATCC | 1 cut(s) | 231 |
| BsuRI | GGCC | 3 cut(s) | 198, 335, 366 |
| BtsIMutI | CAGTG | 1 cut(s) | 153 |
| Cfr13I | GGNCC | 1 cut(s) | 196 |
| CviAII | CATG | 4 cut(s) | 170, 182, 243, 251 |
| CviJI | RGCY | 7 cut(s) | 38, 139, 159, 198, 287, 335, 366 |
| CviKI_1 | RGCY | 7 cut(s) | 38, 139, 159, 198, 287, 335, 366 |
| DpnI | GATC | 4 cut(s) | 67, 83, 152, 192 |
| DpnII | GATC | 4 cut(s) | 65, 81, 150, 190 |
| EaeI | YGGCCR | 1 cut(s) | 364 |
| Eam1104I | CTCTTC | 1 cut(s) | 25 |
| EarI | CTCTTC | 1 cut(s) | 25 |
| Ecl136II | GAGCTC | 1 cut(s) | 139 |
| Eco147I | AGGCCT | 1 cut(s) | 335 |
| Eco24I | GRGCYC | 1 cut(s) | 141 |
| Eco53kI | GAGCTC | 1 cut(s) | 139 |
| EcoICRI | GAGCTC | 1 cut(s) | 139 |
| EcoT38I | GRGCYC | 1 cut(s) | 141 |
| FaeI | CATG | 4 cut(s) | 173, 185, 246, 254 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 22, 54 |
| FatI | CATG | 4 cut(s) | 169, 181, 242, 250 |
| Fnu4HI | GCNGC | 1 cut(s) | 288 |
| FriOI | GRGCYC | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 1 cut(s) | 288 |
| FspBI | CTAG | 2 cut(s) | 69, 96 |
| GluI | GCNGC | 1 cut(s) | 288 |
| HaeIII | GGCC | 3 cut(s) | 198, 335, 366 |
| Hin1II | CATG | 4 cut(s) | 173, 185, 246, 254 |
| HinfI | GANTC | 1 cut(s) | 72 |
| HphI | GGTGA | 1 cut(s) | 25 |
| Hpy188I | TCNGA | 1 cut(s) | 102 |
| Hpy188III | TCNNGA | 4 cut(s) | 69, 76, 148, 274 |
| HpyAV | CCTTC | 1 cut(s) | 46 |
| HpyCH4V | TGCA | 3 cut(s) | 210, 263, 290 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 260 |
| Hsp92II | CATG | 4 cut(s) | 173, 185, 246, 254 |
| Kzo9I | GATC | 4 cut(s) | 65, 81, 150, 190 |
| LmnI | GCTCC | 1 cut(s) | 136 |
| LpnPI | CCDG | 5 cut(s) | 141, 161, 179, 226, 266 |
| Lsp1109I | GCAGC | 1 cut(s) | 274 |
| MaeI | CTAG | 2 cut(s) | 69, 96 |
| MalI | GATC | 4 cut(s) | 67, 83, 152, 192 |
| MboI | GATC | 4 cut(s) | 65, 81, 150, 190 |
| MboII | GAAGA | 2 cut(s) | 42, 91 |
| MflI | RGATCY | 2 cut(s) | 65, 190 |
| MhlI | GDGCHC | 2 cut(s) | 124, 141 |
| MlsI | TGGCCA | 1 cut(s) | 366 |
| MluNI | TGGCCA | 1 cut(s) | 366 |
| MmeI | TCCRAC | 1 cut(s) | 43 |
| MnlI | CCTC | 4 cut(s) | 9, 209, 325, 364 |
| Mox20I | TGGCCA | 1 cut(s) | 366 |
| MscI | TGGCCA | 1 cut(s) | 366 |
| MslI | CAYNNNNRTG | 1 cut(s) | 129 |
| Msp20I | TGGCCA | 1 cut(s) | 366 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 260 |
| NdeII | GATC | 4 cut(s) | 65, 81, 150, 190 |
| NlaIII | CATG | 4 cut(s) | 173, 185, 246, 254 |
| NspI | RCATGY | 1 cut(s) | 185 |
| PceI | AGGCCT | 1 cut(s) | 335 |
| PfeI | GAWTC | 1 cut(s) | 72 |
| PkrI | GCNGC | 1 cut(s) | 289 |
| Psp124BI | GAGCTC | 1 cut(s) | 141 |
| PspPI | GGNCC | 1 cut(s) | 196 |
| PsuI | RGATCY | 2 cut(s) | 65, 190 |
| RseI | CAYNNNNRTG | 1 cut(s) | 129 |
| SacI | GAGCTC | 1 cut(s) | 141 |
| SatI | GCNGC | 1 cut(s) | 288 |
| Sau3AI | GATC | 4 cut(s) | 65, 81, 150, 190 |
| Sau96I | GGNCC | 1 cut(s) | 196 |
| SduI | GDGCHC | 2 cut(s) | 124, 141 |
| SetI | ASST | 7 cut(s) | 50, 141, 215, 272, 289, 312, 326 |
| SfcI | CTRYAG | 1 cut(s) | 186 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 129 |
| SpeI | ACTAGT | 1 cut(s) | 95 |
| SseBI | AGGCCT | 1 cut(s) | 335 |
| SspMI | CTAG | 2 cut(s) | 69, 96 |
| SstI | GAGCTC | 1 cut(s) | 141 |
| StuI | AGGCCT | 1 cut(s) | 335 |
| TfiI | GAWTC | 1 cut(s) | 72 |
| TscAI | CASTG | 1 cut(s) | 160 |
| TseI | GCWGC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 1 cut(s) | 239 |
| TspRI | CASTG | 1 cut(s) | 160 |
| XbaI | TCTAGA | 1 cut(s) | 68 |
| XceI | RCATGY | 1 cut(s) | 185 |
| XspI | CTAG | 2 cut(s) | 69, 96 |