RNA helicase SDE3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOV-10_beta-barrel | PF21634 | 283 - 358 | 2.1e-08 | Helicase MOV-10, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1659 |
| Acc65I | GGTACC | 1 cut(s) | 1510 |
| AccB1I | GGYRCC | 1 cut(s) | 1510 |
| AccII | CGCG | 5 cut(s) | 585, 725, 987, 1171, 1497 |
| AciI | CCGC | 4 cut(s) | 583, 723, 1417, 1495 |
| AclI | AACGTT | 1 cut(s) | 563 |
| AclWI | GGATC | 2 cut(s) | 612, 1217 |
| AcoI | YGGCCR | 1 cut(s) | 1291 |
| AcsI | RAATTY | 2 cut(s) | 1016, 1586 |
| AcuI | CTGAAG | 1 cut(s) | 1838 |
| AfaI | GTAC | 3 cut(s) | 202, 1116, 1512 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 528, 971 |
| AflIII | ACRYGT | 1 cut(s) | 1470 |
| AgeI | ACCGGT | 2 cut(s) | 1208, 1757 |
| AgsI | TTSAA | 8 cut(s) | 80, 504, 594, 1022, 1081, 1096, 1450, 1835 |
| AhlI | ACTAGT | 1 cut(s) | 1721 |
| AjnI | CCWGG | 3 cut(s) | 139, 1765, 1844 |
| Alw21I | GWGCWC | 4 cut(s) | 1105, 1208, 1362, 1408 |
| Alw26I | GTCTC | 6 cut(s) | 193, 256, 319, 382, 471, 723 |
| Alw44I | GTGCAC | 2 cut(s) | 1204, 1358 |
| AlwI | GGATC | 2 cut(s) | 612, 1217 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 715 |
| AoxI | GGCC | 6 cut(s) | 530, 785, 1050, 1291, 1639, 1713 |
| ApaLI | GTGCAC | 2 cut(s) | 1204, 1358 |
| ApeKI | GCWGC | 4 cut(s) | 746, 830, 1198, 1487 |
| ApoI | RAATTY | 2 cut(s) | 1016, 1586 |
| AsiGI | ACCGGT | 2 cut(s) | 1208, 1757 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1774 |
| Asp718I | GGTACC | 1 cut(s) | 1510 |
| AspLEI | GCGC | 1 cut(s) | 587 |
| AspS9I | GGNCC | 4 cut(s) | 144, 530, 1051, 1714 |
| AsuHPI | GGTGA | 5 cut(s) | 53, 1034, 1097, 1263, 1772 |
| AsuII | TTCGAA | 1 cut(s) | 795 |
| AvaII | GGWCC | 1 cut(s) | 144 |
| BaeGI | GKGCMC | 2 cut(s) | 1208, 1362 |
| BalI | TGGCCA | 1 cut(s) | 1293 |
| BanI | GGYRCC | 1 cut(s) | 1510 |
| BanII | GRGCYC | 2 cut(s) | 1105, 1551 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 193, 225, 256, 288, 319, 351 |
| BbsI | GAAGAC | 2 cut(s) | 1524, 1875 |
| Bbv12I | GWGCWC | 4 cut(s) | 1105, 1208, 1362, 1408 |
| BbvCI | CCTCAGC | 1 cut(s) | 762 |
| BbvI | GCAGC | 4 cut(s) | 733, 842, 1185, 1474 |
| BceAI | ACGGC | 1 cut(s) | 521 |
| BciT130I | CCWGG | 3 cut(s) | 141, 1767, 1846 |
| BcoDI | GTCTC | 6 cut(s) | 193, 256, 319, 382, 471, 723 |
| BcuI | ACTAGT | 1 cut(s) | 1721 |
| BfaI | CTAG | 3 cut(s) | 1010, 1410, 1722 |
| BfmI | CTRYAG | 2 cut(s) | 1239, 1647 |
| BisI | GCNGC | 4 cut(s) | 747, 831, 1199, 1488 |
| BlpI | GCTNAGC | 1 cut(s) | 960 |
| BlsI | GCNGC | 4 cut(s) | 748, 832, 1200, 1489 |
| Bme1390I | CCNGG | 3 cut(s) | 141, 1767, 1846 |
| Bme18I | GGWCC | 1 cut(s) | 144 |
| BmgT120I | GGNCC | 4 cut(s) | 144, 530, 1051, 1714 |
| BmiI | GGNNCC | 2 cut(s) | 145, 1512 |
| BmrFI | CCNGG | 3 cut(s) | 141, 1767, 1846 |
| BmrI | ACTGGG | 1 cut(s) | 318 |
| BmsI | GCATC | 5 cut(s) | 470, 696, 1133, 1383, 1669 |
| BmuI | ACTGGG | 1 cut(s) | 318 |
| BpiI | GAAGAC | 2 cut(s) | 1524, 1875 |
| BpmI | CTGGAG | 1 cut(s) | 1828 |
| Bpu10I | CCTNAGC | 1 cut(s) | 762 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 960 |
| Bpu14I | TTCGAA | 1 cut(s) | 795 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1227 |
| BsaJI | CCNNGG | 2 cut(s) | 140, 867 |
| BsaWI | WCCGGW | 4 cut(s) | 439, 490, 1208, 1757 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 528, 971 |
| Bse118I | RCCGGY | 2 cut(s) | 1208, 1757 |
| Bse1I | ACTGG | 9 cut(s) | 185, 248, 311, 324, 374, 1193, 1339, 1344, 1363 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1227 |
| BseBI | CCWGG | 3 cut(s) | 141, 1767, 1846 |
| BseDI | CCNNGG | 2 cut(s) | 140, 867 |
| BseGI | GGATG | 4 cut(s) | 556, 1398, 1521, 1684 |
| BseJI | GATNNNNATC | 1 cut(s) | 1227 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 528, 971 |
| BseMII | CTCAG | 5 cut(s) | 753, 951, 1149, 1452, 1785 |
| BseNI | ACTGG | 9 cut(s) | 185, 248, 311, 324, 374, 1193, 1339, 1344, 1363 |
| BseRI | GAGGAG | 1 cut(s) | 351 |
| BseSI | GKGCMC | 2 cut(s) | 1208, 1362 |
| BseXI | GCAGC | 4 cut(s) | 733, 842, 1185, 1474 |
| BsgI | GTGCAG | 1 cut(s) | 1173 |
| Bsh1236I | CGCG | 5 cut(s) | 585, 725, 987, 1171, 1497 |
| BshFI | GGCC | 6 cut(s) | 532, 787, 1052, 1293, 1641, 1715 |
| BshNI | GGYRCC | 1 cut(s) | 1510 |
| BshTI | ACCGGT | 2 cut(s) | 1208, 1757 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1105, 1208, 1362, 1408 |
| BsiSI | CCGG | 4 cut(s) | 440, 491, 1209, 1758 |
| BslFI | GGGAC | 6 cut(s) | 157, 202, 265, 391, 938, 964 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 528, 971 |
| BsmAI | GTCTC | 6 cut(s) | 193, 256, 319, 382, 471, 723 |
| BsmBI | CGTCTC | 1 cut(s) | 471 |
| BsmFI | GGGAC | 6 cut(s) | 157, 202, 265, 391, 938, 964 |
| BsmI | GAATGC | 4 cut(s) | 1179, 1260, 1489, 1490 |
| BsnI | GGCC | 6 cut(s) | 532, 787, 1052, 1293, 1641, 1715 |
| Bsp119I | TTCGAA | 1 cut(s) | 795 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1105, 1208, 1362, 1408, 1551 |
| Bsp1407I | TGTACA | 1 cut(s) | 1114 |
| Bsp143I | GATC | 3 cut(s) | 604, 1222, 1596 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 960 |
| BspACI | CCGC | 4 cut(s) | 583, 723, 1417, 1495 |
| BspANI | GGCC | 6 cut(s) | 532, 787, 1052, 1293, 1641, 1715 |
| BspCNI | CTCAG | 5 cut(s) | 754, 952, 1150, 1453, 1786 |
| BspFNI | CGCG | 5 cut(s) | 585, 725, 987, 1171, 1497 |
| BspLI | GGNNCC | 2 cut(s) | 145, 1512 |
| BspMAI | CTGCAG | 2 cut(s) | 1243, 1651 |
| BspPI | GGATC | 2 cut(s) | 612, 1217 |
| BspT104I | TTCGAA | 1 cut(s) | 795 |
| BspT107I | GGYRCC | 1 cut(s) | 1510 |
| BsrFI | RCCGGY | 2 cut(s) | 1208, 1757 |
| BsrGI | TGTACA | 1 cut(s) | 1114 |
| BsrI | ACTGG | 9 cut(s) | 185, 248, 311, 324, 374, 1193, 1339, 1344, 1363 |
| BssAI | RCCGGY | 2 cut(s) | 1208, 1757 |
| BssECI | CCNNGG | 2 cut(s) | 140, 867 |
| BssMI | GATC | 3 cut(s) | 604, 1222, 1596 |
| BssT1I | CCWWGG | 1 cut(s) | 867 |
| Bst2UI | CCWGG | 3 cut(s) | 141, 1767, 1846 |
| Bst4CI | ACNGT | 4 cut(s) | 814, 1747, 1775, 1874 |
| Bst6I | CTCTTC | 4 cut(s) | 595, 852, 1157, 1897 |
| BstAUI | TGTACA | 1 cut(s) | 1114 |
| BstBI | TTCGAA | 1 cut(s) | 795 |
| BstC8I | GCNNGC | 5 cut(s) | 534, 1173, 1177, 1291, 1295 |
| BstDEI | CTNAG | 6 cut(s) | 549, 762, 960, 1158, 1461, 1794 |
| BstF5I | GGATG | 4 cut(s) | 556, 1398, 1521, 1684 |
| BstFNI | CGCG | 5 cut(s) | 585, 725, 987, 1171, 1497 |
| BstHHI | GCGC | 1 cut(s) | 587 |
| BstKTI | GATC | 3 cut(s) | 607, 1225, 1599 |
| BstMAI | GTCTC | 6 cut(s) | 193, 256, 319, 382, 471, 723 |
| BstMBI | GATC | 3 cut(s) | 604, 1222, 1596 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1109, 1130, 1266, 1487, 1617, 1688, 1813 |
| BstNI | CCWGG | 3 cut(s) | 141, 1767, 1846 |
| BstNSI | RCATGY | 1 cut(s) | 1474 |
| BstSCI | CCNGG | 3 cut(s) | 139, 1765, 1844 |
| BstSFI | CTRYAG | 2 cut(s) | 1239, 1647 |
| BstSLI | GKGCMC | 2 cut(s) | 1208, 1362 |
| BstUI | CGCG | 5 cut(s) | 585, 725, 987, 1171, 1497 |
| BstV1I | GCAGC | 4 cut(s) | 733, 842, 1185, 1474 |
| BstV2I | GAAGAC | 2 cut(s) | 1524, 1875 |
| BsuRI | GGCC | 6 cut(s) | 532, 787, 1052, 1293, 1641, 1715 |
| BtgZI | GCGATG | 3 cut(s) | 68, 324, 673 |
| BtsCI | GGATG | 4 cut(s) | 556, 1398, 1521, 1684 |
| BtsI | GCAGTG | 3 cut(s) | 1006, 1185, 1362 |
| BtsIMutI | CAGTG | 6 cut(s) | 810, 1006, 1185, 1200, 1362, 1857 |
| Cac8I | GCNNGC | 5 cut(s) | 534, 1173, 1177, 1291, 1295 |
| CaiI | CAGNNNCTG | 1 cut(s) | 715 |
| CfoI | GCGC | 1 cut(s) | 587 |
| Cfr10I | RCCGGY | 2 cut(s) | 1208, 1757 |
| Cfr13I | GGNCC | 4 cut(s) | 144, 530, 1051, 1714 |
| CseI | GACGC | 1 cut(s) | 976 |
| Csp6I | GTAC | 3 cut(s) | 201, 1115, 1511 |
| CspAI | ACCGGT | 2 cut(s) | 1208, 1757 |
| CviAII | CATG | 5 cut(s) | 53, 1471, 1533, 1612, 1631 |
| CviQI | GTAC | 3 cut(s) | 201, 1115, 1511 |
| DdeI | CTNAG | 6 cut(s) | 549, 762, 960, 1158, 1461, 1794 |
| DpnI | GATC | 3 cut(s) | 606, 1224, 1598 |
| DpnII | GATC | 3 cut(s) | 604, 1222, 1596 |
| DraI | TTTAAA | 2 cut(s) | 433, 841 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1659 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1659 |
| EaeI | YGGCCR | 1 cut(s) | 1291 |
| Eam1104I | CTCTTC | 4 cut(s) | 595, 852, 1157, 1897 |
| EarI | CTCTTC | 4 cut(s) | 595, 852, 1157, 1897 |
| Ecl136II | GAGCTC | 1 cut(s) | 1103 |
| Eco130I | CCWWGG | 1 cut(s) | 867 |
| Eco147I | AGGCCT | 1 cut(s) | 1641 |
| Eco24I | GRGCYC | 2 cut(s) | 1105, 1551 |
| Eco32I | GATATC | 1 cut(s) | 676 |
| Eco47I | GGWCC | 1 cut(s) | 144 |
| Eco53kI | GAGCTC | 1 cut(s) | 1103 |
| Eco57I | CTGAAG | 1 cut(s) | 1838 |
| EcoICRI | GAGCTC | 1 cut(s) | 1103 |
| EcoO109I | RGGNCCY | 1 cut(s) | 144 |
| EcoRII | CCWGG | 3 cut(s) | 139, 1765, 1844 |
| EcoRV | GATATC | 1 cut(s) | 676 |
| EcoT14I | CCWWGG | 1 cut(s) | 867 |
| EcoT22I | ATGCAT | 2 cut(s) | 463, 1126 |
| EcoT38I | GRGCYC | 2 cut(s) | 1105, 1551 |
| ErhI | CCWWGG | 1 cut(s) | 867 |
| Esp3I | CGTCTC | 1 cut(s) | 471 |
| FaeI | CATG | 5 cut(s) | 56, 1474, 1536, 1615, 1634 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 725, 757 |
| FaqI | GGGAC | 6 cut(s) | 157, 202, 265, 391, 938, 964 |
| FatI | CATG | 5 cut(s) | 52, 1470, 1532, 1611, 1630 |
| FauI | CCCGC | 2 cut(s) | 590, 730 |
| FauNDI | CATATG | 1 cut(s) | 1400 |
| Fnu4HI | GCNGC | 4 cut(s) | 747, 831, 1199, 1488 |
| FokI | GGATG | 4 cut(s) | 543, 1405, 1508, 1691 |
| FriOI | GRGCYC | 2 cut(s) | 1105, 1551 |
| Fsp4HI | GCNGC | 4 cut(s) | 747, 831, 1199, 1488 |
| FspBI | CTAG | 3 cut(s) | 1010, 1410, 1722 |
| GlaI | GCGC | 1 cut(s) | 586 |
| GluI | GCNGC | 4 cut(s) | 747, 831, 1199, 1488 |
| GsuI | CTGGAG | 1 cut(s) | 1828 |
| HaeIII | GGCC | 6 cut(s) | 532, 787, 1052, 1293, 1641, 1715 |
| HapII | CCGG | 4 cut(s) | 440, 491, 1209, 1758 |
| HgaI | GACGC | 1 cut(s) | 976 |
| HhaI | GCGC | 1 cut(s) | 587 |
| Hin1II | CATG | 5 cut(s) | 56, 1474, 1536, 1615, 1634 |
| Hin6I | GCGC | 1 cut(s) | 585 |
| HinP1I | GCGC | 1 cut(s) | 585 |
| HindIII | AAGCTT | 1 cut(s) | 1441 |
| HpaII | CCGG | 4 cut(s) | 440, 491, 1209, 1758 |
| HphI | GGTGA | 5 cut(s) | 53, 1034, 1097, 1263, 1772 |
| Hpy166II | GTNNAC | 3 cut(s) | 1206, 1360, 1763 |
| Hpy188I | TCNGA | 5 cut(s) | 1129, 1468, 1569, 1592, 1910 |
| Hpy188III | TCNNGA | 4 cut(s) | 668, 679, 1329, 1460 |
| Hpy8I | GTNNAC | 3 cut(s) | 1206, 1360, 1763 |
| Hpy99I | CGWCG | 3 cut(s) | 992, 1251, 1573 |
| HpyAV | CCTTC | 2 cut(s) | 1302, 1797 |
| HpyCH4III | ACNGT | 4 cut(s) | 814, 1747, 1775, 1874 |
| HpyCH4IV | ACGT | 4 cut(s) | 75, 422, 563, 1369 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1109, 1130, 1266, 1487, 1617, 1688, 1813 |
| HpyF3I | CTNAG | 6 cut(s) | 549, 762, 960, 1158, 1461, 1794 |
| HpySE526I | ACGT | 4 cut(s) | 75, 422, 563, 1369 |
| Hsp92II | CATG | 5 cut(s) | 56, 1474, 1536, 1615, 1634 |
| HspAI | GCGC | 1 cut(s) | 585 |
| KpnI | GGTACC | 1 cut(s) | 1514 |
| Kzo9I | GATC | 3 cut(s) | 604, 1222, 1596 |
| LmnI | GCTCC | 4 cut(s) | 558, 1311, 1411, 1897 |
| Lsp1109I | GCAGC | 4 cut(s) | 733, 842, 1185, 1474 |
| LweI | GCATC | 5 cut(s) | 470, 696, 1133, 1383, 1669 |
| MaeI | CTAG | 3 cut(s) | 1010, 1410, 1722 |
| MaeII | ACGT | 4 cut(s) | 75, 422, 563, 1369 |
| MaeIII | GTNAC | 5 cut(s) | 14, 808, 1365, 1412, 1753 |
| MalI | GATC | 3 cut(s) | 606, 1224, 1598 |
| MboI | GATC | 3 cut(s) | 604, 1222, 1596 |
| MfeI | CAATTG | 1 cut(s) | 1892 |
| MhlI | GDGCHC | 5 cut(s) | 1105, 1208, 1362, 1408, 1551 |
| MlsI | TGGCCA | 1 cut(s) | 1293 |
| MluNI | TGGCCA | 1 cut(s) | 1293 |
| MlyI | GAGTC | 3 cut(s) | 1169, 1472, 1833 |
| MmeI | TCCRAC | 4 cut(s) | 584, 1285, 1446, 1592 |
| Mox20I | TGGCCA | 1 cut(s) | 1293 |
| Mph1103I | ATGCAT | 2 cut(s) | 463, 1126 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1774 |
| MscI | TGGCCA | 1 cut(s) | 1293 |
| MseI | TTAA | 5 cut(s) | 390, 432, 567, 840, 1256 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1610 |
| Msp20I | TGGCCA | 1 cut(s) | 1293 |
| MspA1I | CMGCKG | 1 cut(s) | 1419 |
| MspI | CCGG | 4 cut(s) | 440, 491, 1209, 1758 |
| MspR9I | CCNGG | 3 cut(s) | 141, 1767, 1846 |
| MssI | GTTTAAAC | 1 cut(s) | 433 |
| MunI | CAATTG | 1 cut(s) | 1892 |
| Mva1269I | GAATGC | 4 cut(s) | 1179, 1260, 1489, 1490 |
| MvaI | CCWGG | 3 cut(s) | 141, 1767, 1846 |
| MvnI | CGCG | 5 cut(s) | 585, 725, 987, 1171, 1497 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1109, 1130, 1266, 1487, 1617, 1688, 1813 |
| NdeI | CATATG | 1 cut(s) | 1400 |
| NdeII | GATC | 3 cut(s) | 604, 1222, 1596 |
| NlaIII | CATG | 5 cut(s) | 56, 1474, 1536, 1615, 1634 |
| NlaIV | GGNNCC | 2 cut(s) | 145, 1512 |
| NmuCI | GTSAC | 2 cut(s) | 14, 808 |
| NsiI | ATGCAT | 2 cut(s) | 463, 1126 |
| NspI | RCATGY | 1 cut(s) | 1474 |
| NspV | TTCGAA | 1 cut(s) | 795 |
| PceI | AGGCCT | 1 cut(s) | 1641 |
| PciI | ACATGT | 1 cut(s) | 1470 |
| PctI | GAATGC | 4 cut(s) | 1179, 1260, 1489, 1490 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1774 |
| PfeI | GAWTC | 6 cut(s) | 56, 443, 644, 901, 1456, 1786 |
| PflFI | GACNNNGTC | 1 cut(s) | 929 |
| PinAI | ACCGGT | 2 cut(s) | 1208, 1757 |
| PkrI | GCNGC | 4 cut(s) | 748, 832, 1200, 1489 |
| PleI | GAGTC | 3 cut(s) | 1168, 1471, 1833 |
| PmeI | GTTTAAAC | 1 cut(s) | 433 |
| PpsI | GAGTC | 3 cut(s) | 1168, 1471, 1833 |
| PpuMI | RGGWCCY | 1 cut(s) | 144 |
| PscI | ACATGT | 1 cut(s) | 1470 |
| Psp124BI | GAGCTC | 1 cut(s) | 1105 |
| Psp1406I | AACGTT | 1 cut(s) | 563 |
| Psp5II | RGGWCCY | 1 cut(s) | 144 |
| Psp6I | CCWGG | 3 cut(s) | 139, 1765, 1844 |
| PspGI | CCWGG | 3 cut(s) | 139, 1765, 1844 |
| PspN4I | GGNNCC | 2 cut(s) | 145, 1512 |
| PspPI | GGNCC | 4 cut(s) | 144, 530, 1051, 1714 |
| PspPPI | RGGWCCY | 1 cut(s) | 144 |
| PstI | CTGCAG | 2 cut(s) | 1243, 1651 |
| PstNI | CAGNNNCTG | 1 cut(s) | 715 |
| PsyI | GACNNNGTC | 1 cut(s) | 929 |
| RsaI | GTAC | 3 cut(s) | 202, 1116, 1512 |
| RsaNI | GTAC | 3 cut(s) | 201, 1115, 1511 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1610 |
| SacI | GAGCTC | 1 cut(s) | 1105 |
| SaqAI | TTAA | 5 cut(s) | 390, 432, 567, 840, 1256 |
| SatI | GCNGC | 4 cut(s) | 747, 831, 1199, 1488 |
| Sau3AI | GATC | 3 cut(s) | 604, 1222, 1596 |
| Sau96I | GGNCC | 4 cut(s) | 144, 530, 1051, 1714 |
| SchI | GAGTC | 3 cut(s) | 1169, 1472, 1833 |
| ScrFI | CCNGG | 3 cut(s) | 141, 1767, 1846 |
| SduI | GDGCHC | 5 cut(s) | 1105, 1208, 1362, 1408, 1551 |
| SfaNI | GCATC | 5 cut(s) | 470, 696, 1133, 1383, 1669 |
| SfcI | CTRYAG | 2 cut(s) | 1239, 1647 |
| SfuI | TTCGAA | 1 cut(s) | 795 |
| SinI | GGWCC | 1 cut(s) | 144 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1610 |
| SpeI | ACTAGT | 1 cut(s) | 1721 |
| SseBI | AGGCCT | 1 cut(s) | 1641 |
| SsiI | CCGC | 4 cut(s) | 583, 723, 1417, 1495 |
| SspMI | CTAG | 3 cut(s) | 1010, 1410, 1722 |
| SstI | GAGCTC | 1 cut(s) | 1105 |
| StuI | AGGCCT | 1 cut(s) | 1641 |
| StyD4I | CCNGG | 3 cut(s) | 139, 1765, 1844 |
| StyI | CCWWGG | 1 cut(s) | 867 |
| TaaI | ACNGT | 4 cut(s) | 814, 1747, 1775, 1874 |
| TaiI | ACGT | 4 cut(s) | 78, 425, 566, 1372 |
| TaqI | TCGA | 6 cut(s) | 5, 795, 920, 1328, 1477, 1789 |
| TatI | WGTACW | 2 cut(s) | 200, 1114 |
| TfiI | GAWTC | 6 cut(s) | 56, 443, 644, 901, 1456, 1786 |
| Tru1I | TTAA | 5 cut(s) | 390, 432, 567, 840, 1256 |
| Tru9I | TTAA | 5 cut(s) | 390, 432, 567, 840, 1256 |
| TscAI | CASTG | 6 cut(s) | 817, 1006, 1192, 1200, 1362, 1857 |
| TseFI | GTSAC | 2 cut(s) | 14, 808 |
| TseI | GCWGC | 4 cut(s) | 746, 830, 1198, 1487 |
| Tsp45I | GTSAC | 2 cut(s) | 14, 808 |
| TspDTI | ATGAA | 6 cut(s) | 201, 264, 327, 390, 1815, 1873 |
| TspGWI | ACGGA | 2 cut(s) | 1398, 1586 |
| TspRI | CASTG | 6 cut(s) | 817, 1006, 1192, 1200, 1362, 1857 |
| Tth111I | GACNNNGTC | 1 cut(s) | 929 |
| VneI | GTGCAC | 2 cut(s) | 1204, 1358 |
| VpaK11BI | GGWCC | 1 cut(s) | 144 |
| XapI | RAATTY | 2 cut(s) | 1016, 1586 |
| XceI | RCATGY | 1 cut(s) | 1474 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1301 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1774 |
| XspI | CTAG | 3 cut(s) | 1010, 1410, 1722 |
| Zsp2I | ATGCAT | 2 cut(s) | 463, 1126 |