MD13G1238300.v1.1

RNA helicase SDE3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000595
Physical Location & Seq
Forward (+)
24203221 .. 24205953
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1238300.v1.1.491

Sequence Viewer

Length: 1704 bp
ATGTCGATTTTTAGTGACTTCTGGAGATGGATTTTTGGCGGTAAAGATGAGCATGATTCTAATTCTGCTTCTCACGTTCAAAATCGCACACAAACCCGTTCCTATGAGCAATCTCAACCCCCATTTCCTCCATCTAAACCACTCTCATCTCCCTGTAATCCATCTTCATCGTCCCCGAAACCTTCCACGTCATTGTTTAAACCACCGGAATCTTCTTCTCTCAATGCATCGTCTCCATTTTCTTCTAATCCCCCTCCGGTATGTGCTTCAAAACCATCTCCATCTTCCCCTACTGGGCCTGCCGTATCTTCCACTAAGCTCCATCCAACGTTTAAGCCGGTTCTATCCCGCGCCTCTTCAAATGTATTGGATCAAAAGGGGAAGAAAAGCTATGTGTGGGTTGAGAATGATTCATTACCTCTGTTCGCAATTCCTGACGATATCCAAGATTTGATCAAGAATGGCATCGCACCCAAAGTTCTAAACCAGCCTCTGTCTCCCGCGACATATAAGGATTACTTCGCTGCTCTCTTATATGCTGAAGAATTATACTACGAGAAATGGCCTCACTTCGAATTGGAGAATGTCCCTGTGGAGTTGCAGGAAGCAGCAATTTTTAAAAAACCAGACAAAGAAGAGAAAACCTTGGTAGCATTTGATATGGCTTCTTTTCCTTCGAATCGCCCATTTCTTTTGTCGAGGGACTTGGTCTATGTGCGACCATCGGGGACAAAAGCTGAGCTATTTCAGGGCTTTATATATCGCGTCGTCAAAAGCAGTGTTGTTTTAGTGGAATTTGAAGATAACTTTTATGTCAATCACTATTCGGCCCAAAAATATGATGTCAGCTTCTCATTCAATAGGGTCTGTTTGAAAAGAGCTCACCAAGCTGTACAAAATGCATCAGAGGCTTTGTTTAGGAACTTCCTCTTCCCTGAGTCTGTTTCGCGTGCGAGTATTCCCACTGCACCGCGGCTGCTGTGCACCGGTCATAAACTTGATCCCAATCAATTATCTGCAGTTTGTCGTATTTTAAGCATTCGTGGCTCACCACCTTACCTATTGGCTGGCCAGCTCTGTGTTGAAAGGAGCGATTTTGGGCTATCGAGAACTGGACTGGTGGTTAGTGAAGCAGTGCACCAGTTATGTCAAACTTCACACGGAAATAGGATGCTCATATGTGCTCCTAGTAACCGCTGTTGTGATGGGCTTATGAGAAGCTTGTTGAAATGGATTCCTGAGTCGGACATGTTTCGAGCGAATGCTGCATTCCGCGAGAAAGATGAGGTACCCGAAGACATCCTCCCGTCATGCCTTTACAAAGAGCCCTACTTCTCTTGTCCTCCGACGGAGGAACTTTGTAAATTCAGAGTGATCTTCTCCACTTACATGAGTAGCTTTCGGCTACATGATAAGGGCCTAACTGCTGGACATTTTAGTCATATTTTTCTGGTGGATGCTTCGTCTGCTATTGAGCCAGAAACAATGGTGGCCCTGACTACTTTCGCTGACAAGAATACTACTGTTATAGTTACCGGTGAACCAGGAAACCGTTCGTCTTGGATTCGAGCTGACATTGGAAGGAATAAGGGGCTGAAGATTTCATTCTTTGAAAGACTTTCCAAGTCAGTGCCATATAATATAGAAGACTCAGTCCAATGTTCACCACACAATTGGAGCATTATCAAGGATTCAAGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

568

Amino Acids

63.45

Weight (kDa)

8.27

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOV-10_beta-barrel PF21634 209 - 284 5.5e-09 Helicase MOV-10, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1437
Acc65I GGTACC 1 cut(s) 1288
AccB1I GGYRCC 1 cut(s) 1288
AccII CGCG 6 cut(s) 351, 503, 765, 949, 973, 1275
AciI CCGC 7 cut(s) 39, 349, 501, 971, 973, 1195, 1273
AclI AACGTT 1 cut(s) 329
AclWI GGATC 2 cut(s) 378, 995
AcoI YGGCCR 1 cut(s) 1069
AcsI RAATTY 2 cut(s) 794, 1364
AcuI CTGAAG 2 cut(s) 561, 1616
AfaI GTAC 2 cut(s) 894, 1290
AfiI CCNNNNNNNGG 1 cut(s) 294
AflIII ACRYGT 1 cut(s) 1248
AgeI ACCGGT 2 cut(s) 986, 1535
AjiI CACGTC 1 cut(s) 189
AjnI CCWGG 1 cut(s) 1543
Alw21I GWGCWC 4 cut(s) 883, 986, 1140, 1186
Alw26I GTCTC 2 cut(s) 237, 501
Alw44I GTGCAC 2 cut(s) 982, 1136
AlwI GGATC 2 cut(s) 378, 995
AlwNI CAGNNNCTG 1 cut(s) 493
AoxI GGCC 6 cut(s) 296, 563, 828, 1069, 1417, 1491
ApaLI GTGCAC 2 cut(s) 982, 1136
ApeKI GCWGC 4 cut(s) 524, 608, 976, 1265
ApoI RAATTY 2 cut(s) 794, 1364
AsiGI ACCGGT 2 cut(s) 986, 1535
Asp700I GAANNNNTTC 1 cut(s) 1552
Asp718I GGTACC 1 cut(s) 1288
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 4 cut(s) 296, 829, 1417, 1492
AsuHPI GGTGA 4 cut(s) 875, 1041, 1550, 1656
AsuII TTCGAA 2 cut(s) 573, 677
BaeGI GKGCMC 2 cut(s) 986, 1140
BalI TGGCCA 1 cut(s) 1071
BanI GGYRCC 1 cut(s) 1288
BanII GRGCYC 2 cut(s) 883, 1329
BarI GAAGNNNNNNTAC 2 cut(s) 148, 180
BbsI GAAGAC 2 cut(s) 1302, 1653
Bbv12I GWGCWC 4 cut(s) 883, 986, 1140, 1186
BbvI GCAGC 4 cut(s) 511, 620, 963, 1252
BccI CCATC 8 cut(s) 21, 139, 169, 283, 289, 330, 730, 1199
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 1545
BclI TGATCA 1 cut(s) 453
BcoDI GTCTC 2 cut(s) 237, 501
BfaI CTAG 1 cut(s) 1188
BfmI CTRYAG 1 cut(s) 1017
BisI GCNGC 5 cut(s) 525, 609, 974, 977, 1266
BlpI GCTNAGC 1 cut(s) 738
BlsI GCNGC 5 cut(s) 526, 610, 975, 978, 1267
Bme1390I CCNGG 1 cut(s) 1545
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 4 cut(s) 296, 829, 1417, 1492
BmiI GGNNCC 1 cut(s) 1290
BmrFI CCNGG 1 cut(s) 1545
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 5 cut(s) 236, 474, 911, 1161, 1447
BmuI ACTGGG 1 cut(s) 303
BpiI GAAGAC 2 cut(s) 1302, 1653
BpmI CTGGAG 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 738
Bpu14I TTCGAA 2 cut(s) 573, 677
BsaBI GATNNNNATC 1 cut(s) 1005
BsaJI CCNNGG 2 cut(s) 645, 971
BsaWI WCCGGW 4 cut(s) 205, 256, 986, 1535
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse118I RCCGGY 3 cut(s) 337, 986, 1535
Bse1I ACTGG 4 cut(s) 298, 1117, 1122, 1141
Bse8I GATNNNNATC 1 cut(s) 1005
BseBI CCWGG 1 cut(s) 1545
BseDI CCNNGG 2 cut(s) 645, 971
BseGI GGATG 4 cut(s) 322, 1176, 1299, 1462
BseJI GATNNNNATC 1 cut(s) 1005
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 4 cut(s) 729, 927, 1230, 1665
BseNI ACTGG 4 cut(s) 298, 1117, 1122, 1141
BseSI GKGCMC 2 cut(s) 986, 1140
BseXI GCAGC 4 cut(s) 511, 620, 963, 1252
BsgI GTGCAG 1 cut(s) 951
Bsh1236I CGCG 6 cut(s) 351, 503, 765, 949, 973, 1275
BshFI GGCC 6 cut(s) 298, 565, 830, 1071, 1419, 1493
BshNI GGYRCC 1 cut(s) 1288
BshTI ACCGGT 2 cut(s) 986, 1535
BsiHKAI GWGCWC 4 cut(s) 883, 986, 1140, 1186
BsiSI CCGG 5 cut(s) 206, 257, 338, 987, 1536
BslFI GGGAC 4 cut(s) 157, 572, 716, 742
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 237, 501
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 4 cut(s) 157, 572, 716, 742
BsmI GAATGC 3 cut(s) 1038, 1267, 1268
BsnI GGCC 6 cut(s) 298, 565, 830, 1071, 1419, 1493
Bsp119I TTCGAA 2 cut(s) 573, 677
Bsp1286I GDGCHC 5 cut(s) 883, 986, 1140, 1186, 1329
Bsp1407I TGTACA 1 cut(s) 892
Bsp143I GATC 4 cut(s) 370, 453, 1000, 1374
Bsp1720I GCTNAGC 1 cut(s) 738
BspACI CCGC 7 cut(s) 39, 349, 501, 971, 973, 1195, 1273
BspANI GGCC 6 cut(s) 298, 565, 830, 1071, 1419, 1493
BspCNI CTCAG 4 cut(s) 730, 928, 1231, 1664
BspFNI CGCG 6 cut(s) 351, 503, 765, 949, 973, 1275
BspLI GGNNCC 1 cut(s) 1290
BspMAI CTGCAG 1 cut(s) 1021
BspPI GGATC 2 cut(s) 378, 995
BspT104I TTCGAA 2 cut(s) 573, 677
BspT107I GGYRCC 1 cut(s) 1288
BsrFI RCCGGY 3 cut(s) 337, 986, 1535
BsrGI TGTACA 1 cut(s) 892
BsrI ACTGG 4 cut(s) 298, 1117, 1122, 1141
BssAI RCCGGY 3 cut(s) 337, 986, 1535
BssECI CCNNGG 2 cut(s) 645, 971
BssMI GATC 4 cut(s) 370, 453, 1000, 1374
BssT1I CCWWGG 1 cut(s) 645
Bst2UI CCWGG 1 cut(s) 1545
Bst4CI ACNGT 2 cut(s) 1525, 1553
Bst6I CTCTTC 3 cut(s) 361, 630, 935
BstAUI TGTACA 1 cut(s) 892
BstBI TTCGAA 2 cut(s) 573, 677
BstC8I GCNNGC 4 cut(s) 300, 951, 1069, 1073
BstDEI CTNAG 5 cut(s) 315, 738, 936, 1239, 1651
BstDSI CCRYGG 1 cut(s) 971
BstF5I GGATG 4 cut(s) 322, 1176, 1299, 1462
BstFNI CGCG 6 cut(s) 351, 503, 765, 949, 973, 1275
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 4 cut(s) 373, 456, 1003, 1377
BstMAI GTCTC 2 cut(s) 237, 501
BstMBI GATC 4 cut(s) 370, 453, 1000, 1374
BstMWI GCNNNNNNNGC 5 cut(s) 887, 908, 1044, 1265, 1466
BstNI CCWGG 1 cut(s) 1545
BstNSI RCATGY 1 cut(s) 1252
BstSCI CCNGG 1 cut(s) 1543
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 2 cut(s) 986, 1140
BstUI CGCG 6 cut(s) 351, 503, 765, 949, 973, 1275
BstV1I GCAGC 4 cut(s) 511, 620, 963, 1252
BstV2I GAAGAC 2 cut(s) 1302, 1653
BstXI CCANNNNNNTGG 1 cut(s) 1674
BsuRI GGCC 6 cut(s) 298, 565, 830, 1071, 1419, 1493
BtgI CCRYGG 1 cut(s) 971
BtgZI GCGATG 1 cut(s) 451
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 4 cut(s) 322, 1176, 1299, 1462
BtsI GCAGTG 3 cut(s) 784, 963, 1140
BtsIMutI CAGTG 4 cut(s) 784, 963, 1140, 1635
Cac8I GCNNGC 4 cut(s) 300, 951, 1069, 1073
CaiI CAGNNNCTG 1 cut(s) 493
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 3 cut(s) 337, 986, 1535
Cfr13I GGNCC 4 cut(s) 296, 829, 1417, 1492
Cfr42I CCGCGG 1 cut(s) 974
CseI GACGC 1 cut(s) 754
Csp6I GTAC 2 cut(s) 893, 1289
CspAI ACCGGT 2 cut(s) 986, 1535
CviAII CATG 5 cut(s) 53, 1249, 1311, 1390, 1409
CviQI GTAC 2 cut(s) 893, 1289
DdeI CTNAG 5 cut(s) 315, 738, 936, 1239, 1651
DpnI GATC 4 cut(s) 372, 455, 1002, 1376
DpnII GATC 4 cut(s) 370, 453, 1000, 1374
DraI TTTAAA 2 cut(s) 199, 619
DrdI GACNNNNNNGTC 1 cut(s) 1437
DseDI GACNNNNNNGTC 1 cut(s) 1437
EaeI YGGCCR 1 cut(s) 1069
Eam1104I CTCTTC 3 cut(s) 361, 630, 935
EarI CTCTTC 3 cut(s) 361, 630, 935
Ecl136II GAGCTC 1 cut(s) 881
Eco130I CCWWGG 1 cut(s) 645
Eco24I GRGCYC 2 cut(s) 883, 1329
Eco32I GATATC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 881
Eco57I CTGAAG 2 cut(s) 561, 1616
EcoICRI GAGCTC 1 cut(s) 881
EcoO109I RGGNCCY 1 cut(s) 1417
EcoRII CCWGG 1 cut(s) 1543
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 645
EcoT22I ATGCAT 2 cut(s) 229, 904
EcoT38I GRGCYC 2 cut(s) 883, 1329
ErhI CCWWGG 1 cut(s) 645
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 5 cut(s) 56, 1252, 1314, 1393, 1412
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 4 cut(s) 157, 572, 716, 742
FatI CATG 5 cut(s) 52, 1248, 1310, 1389, 1408
FauI CCCGC 2 cut(s) 356, 508
FauNDI CATATG 1 cut(s) 1178
FbaI TGATCA 1 cut(s) 453
Fnu4HI GCNGC 5 cut(s) 525, 609, 974, 977, 1266
FokI GGATG 4 cut(s) 309, 1183, 1286, 1469
FriOI GRGCYC 2 cut(s) 883, 1329
Fsp4HI GCNGC 5 cut(s) 525, 609, 974, 977, 1266
FspBI CTAG 1 cut(s) 1188
GlaI GCGC 1 cut(s) 352
GluI GCNGC 5 cut(s) 525, 609, 974, 977, 1266
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 6 cut(s) 298, 565, 830, 1071, 1419, 1493
HapII CCGG 5 cut(s) 206, 257, 338, 987, 1536
HgaI GACGC 1 cut(s) 754
HhaI GCGC 1 cut(s) 353
Hin1II CATG 5 cut(s) 56, 1252, 1314, 1393, 1412
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 1219
HpaII CCGG 5 cut(s) 206, 257, 338, 987, 1536
HphI GGTGA 4 cut(s) 875, 1041, 1550, 1656
Hpy166II GTNNAC 4 cut(s) 984, 1138, 1541, 1664
Hpy188I TCNGA 5 cut(s) 907, 1246, 1347, 1370, 1703
Hpy188III TCNNGA 6 cut(s) 22, 434, 457, 1107, 1238, 1695
Hpy8I GTNNAC 4 cut(s) 984, 1138, 1541, 1664
Hpy99I CGWCG 2 cut(s) 770, 1351
HpyAV CCTTC 3 cut(s) 192, 684, 1575
HpyCH4III ACNGT 2 cut(s) 1525, 1553
HpyCH4IV ACGT 3 cut(s) 75, 188, 329
HpyCH4V TGCA 8 cut(s) 227, 601, 902, 968, 984, 1019, 1138, 1268
HpyF10VI GCNNNNNNNGC 5 cut(s) 887, 908, 1044, 1265, 1466
HpyF3I CTNAG 5 cut(s) 315, 738, 936, 1239, 1651
HpySE526I ACGT 3 cut(s) 75, 188, 329
Hsp92II CATG 5 cut(s) 56, 1252, 1314, 1393, 1412
HspAI GCGC 1 cut(s) 351
KpnI GGTACC 1 cut(s) 1292
Ksp22I TGATCA 1 cut(s) 453
KspI CCGCGG 1 cut(s) 974
Kzo9I GATC 4 cut(s) 370, 453, 1000, 1374
LmnI GCTCC 4 cut(s) 324, 1089, 1189, 1677
Lsp1109I GCAGC 4 cut(s) 511, 620, 963, 1252
LweI GCATC 5 cut(s) 236, 474, 911, 1161, 1447
MaeI CTAG 1 cut(s) 1188
MaeII ACGT 3 cut(s) 75, 188, 329
MaeIII GTNAC 3 cut(s) 14, 1190, 1531
MalI GATC 4 cut(s) 372, 455, 1002, 1376
MboI GATC 4 cut(s) 370, 453, 1000, 1374
MfeI CAATTG 1 cut(s) 1672
MhlI GDGCHC 5 cut(s) 883, 986, 1140, 1186, 1329
MlsI TGGCCA 1 cut(s) 1071
MluCI AATT 9 cut(s) 61, 429, 545, 575, 612, 794, 1010, 1364, 1672
MluNI TGGCCA 1 cut(s) 1071
MlyI GAGTC 3 cut(s) 947, 1250, 1643
MmeI TCCRAC 3 cut(s) 350, 1224, 1370
Mox20I TGGCCA 1 cut(s) 1071
Mph1103I ATGCAT 2 cut(s) 229, 904
MroXI GAANNNNTTC 1 cut(s) 1552
MscI TGGCCA 1 cut(s) 1071
MseI TTAA 4 cut(s) 198, 333, 618, 1034
MslI CAYNNNNRTG 1 cut(s) 1388
Msp20I TGGCCA 1 cut(s) 1071
MspA1I CMGCKG 2 cut(s) 973, 1197
MspI CCGG 5 cut(s) 206, 257, 338, 987, 1536
MspR9I CCNGG 1 cut(s) 1545
MssI GTTTAAAC 1 cut(s) 199
MunI CAATTG 1 cut(s) 1672
Mva1269I GAATGC 3 cut(s) 1038, 1267, 1268
MvaI CCWGG 1 cut(s) 1545
MvnI CGCG 6 cut(s) 351, 503, 765, 949, 973, 1275
MwoI GCNNNNNNNGC 5 cut(s) 887, 908, 1044, 1265, 1466
NdeI CATATG 1 cut(s) 1178
NdeII GATC 4 cut(s) 370, 453, 1000, 1374
NlaIII CATG 5 cut(s) 56, 1252, 1314, 1393, 1412
NlaIV GGNNCC 1 cut(s) 1290
NmuCI GTSAC 1 cut(s) 14
NsiI ATGCAT 2 cut(s) 229, 904
NspI RCATGY 1 cut(s) 1252
NspV TTCGAA 2 cut(s) 573, 677
PciI ACATGT 1 cut(s) 1248
PctI GAATGC 3 cut(s) 1038, 1267, 1268
PdmI GAANNNNTTC 1 cut(s) 1552
PfeI GAWTC 7 cut(s) 56, 209, 410, 679, 1234, 1564, 1691
PflFI GACNNNGTC 2 cut(s) 707, 1652
PinAI ACCGGT 2 cut(s) 986, 1535
PkrI GCNGC 5 cut(s) 526, 610, 975, 978, 1267
PleI GAGTC 3 cut(s) 946, 1249, 1643
PmeI GTTTAAAC 1 cut(s) 199
PpsI GAGTC 3 cut(s) 946, 1249, 1643
PscI ACATGT 1 cut(s) 1248
Psp124BI GAGCTC 1 cut(s) 883
Psp1406I AACGTT 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 1543
PspGI CCWGG 1 cut(s) 1543
PspN4I GGNNCC 1 cut(s) 1290
PspPI GGNCC 4 cut(s) 296, 829, 1417, 1492
PstI CTGCAG 1 cut(s) 1021
PstNI CAGNNNCTG 1 cut(s) 493
PsyI GACNNNGTC 2 cut(s) 707, 1652
RsaI GTAC 2 cut(s) 894, 1290
RsaNI GTAC 2 cut(s) 893, 1289
RseI CAYNNNNRTG 1 cut(s) 1388
SacI GAGCTC 1 cut(s) 883
SacII CCGCGG 1 cut(s) 974
SaqAI TTAA 4 cut(s) 198, 333, 618, 1034
SatI GCNGC 5 cut(s) 525, 609, 974, 977, 1266
Sau3AI GATC 4 cut(s) 370, 453, 1000, 1374
Sau96I GGNCC 4 cut(s) 296, 829, 1417, 1492
SchI GAGTC 3 cut(s) 947, 1250, 1643
ScrFI CCNGG 1 cut(s) 1545
SduI GDGCHC 5 cut(s) 883, 986, 1140, 1186, 1329
SfaNI GCATC 5 cut(s) 236, 474, 911, 1161, 1447
SfcI CTRYAG 1 cut(s) 1017
Sfr303I CCGCGG 1 cut(s) 974
SfuI TTCGAA 2 cut(s) 573, 677
SgrBI CCGCGG 1 cut(s) 974
SmiMI CAYNNNNRTG 1 cut(s) 1388
Sse9I AATT 9 cut(s) 61, 429, 545, 575, 612, 794, 1010, 1364, 1672
SsiI CCGC 7 cut(s) 39, 349, 501, 971, 973, 1195, 1273
SspMI CTAG 1 cut(s) 1188
SstI GAGCTC 1 cut(s) 883
StyD4I CCNGG 1 cut(s) 1543
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 2 cut(s) 1525, 1553
TaiI ACGT 3 cut(s) 78, 191, 332
TaqI TCGA 7 cut(s) 5, 573, 677, 698, 1106, 1255, 1567
TasI AATT 9 cut(s) 61, 429, 545, 575, 612, 794, 1010, 1364, 1672
TatI WGTACW 1 cut(s) 892
TauI GCSGC 1 cut(s) 976
TfiI GAWTC 7 cut(s) 56, 209, 410, 679, 1234, 1564, 1691
Tru1I TTAA 4 cut(s) 198, 333, 618, 1034
Tru9I TTAA 4 cut(s) 198, 333, 618, 1034
TscAI CASTG 4 cut(s) 784, 970, 1140, 1635
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 4 cut(s) 524, 608, 976, 1265
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 156, 402, 1593
TspGWI ACGGA 2 cut(s) 1176, 1364
TspRI CASTG 4 cut(s) 784, 970, 1140, 1635
Tth111I GACNNNGTC 2 cut(s) 707, 1652
VneI GTGCAC 2 cut(s) 982, 1136
XapI RAATTY 2 cut(s) 794, 1364
XceI RCATGY 1 cut(s) 1252
XmnI GAANNNNTTC 1 cut(s) 1552
XspI CTAG 1 cut(s) 1188
Zsp2I ATGCAT 2 cut(s) 229, 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.