Prupe.1G070100_v2.0.a1

RNA helicase SDE3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000595
Physical Location & Seq
Forward (+)
4973919 .. 4977504
3586 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G070100.1

Sequence Viewer

Length: 2067 bp
ATGTCAATTTTTCTTGAAGTTTTGAAATGCCTCTTTTGTATTGAAGATGAGCGTGAGAATTATGATTATAATCAGATTCCCAGACAAACTTATGATTCTAAAATTTCCTATAGAAACCGCTCCCCACCCTTGACTTCTACTAATCAATCTCCAGCCTTCTATAACTATAAAGCCCCATCACCTCCATCTCAACCAGTCAAATCTCCCTTTAGTTCATCTTCATCATCCCCTAAGCCTCCGACATCTTCATCGAAACCGCTGCAATCTTCTTATATCAGTACATCTTCTCCATCTCCTAAATTCCCAACATCTTCTTCTTCTTCAACATTCCCTAAGCCCCCAACATCTTCATCTAAGCTGCCTCAATCAACTTTTGTTAATCCATCTTCTTCCAATGCATCTCCATTTATTCTTGAATTCCCAACATCTGTATCTAAACTACAACAATCTTCTTCTGTTGATCAGCGTTCAGCATTGCCTAAACCCCCGACATCTTCATCTAAGCTGCCCCAATCCACTCTTGTTAGTCCATCTTCACCATCCCTTCAACTCCGAACACCTTCATCTAGACCATCTCCTCCTATACTGTCTACATCCTCCTTTAAACCACCTCAGGCTTCATCAAAATCACATTCATCATCGCCAAATCCTCCAACATCTTCAAAACCATCACCATCCTCGGGACGGCCAGCGTCTTCCACTACACTCCCTCCAATCTTTAAGCAAGTTCTATCCCCAGCCTCCTCAGATGTAATAAATGAAAAGGGGAAGAAAAGTTATGTATCGGTTGAAAAGGGTTCATTACCTATATTCACGATTCCTGAGGATTTCAAAGATTTGATCAAGAATGACATTGTGCCTAAAGTTCTTAAACAGCCTCTGTCTCCCACGACATATAAGGATTACTTTGCTGCTCTGTTATACGCTGAAGAGTTCTACCATGAGAAATGGGCTGATTTCAATATGAAGAATGTGACACTGAAGTTGCAAAAAGCATCAGTTTACAAAAATCTGGACAAGGAAGAGAAAACCTTCGTAGAATTTATGATTGATTCTGTTCCTGAAAATCGGCCATTCCTTTTGTCGAGGGACTTAGTCTATGTGAGGCCATCAGGTACAAATGCTGAGCAGTTTCAGGGCATTATAAATCGCATTATTAGGAGCAATCTTGTATTAGTGGAATTTGAATATGAATTTTATGATTATCATTATTCGACCCAAAAATATGATGTCAGCTTCTCATTCAATCGAGTATGTTTGAAAAGAGCTCACCAAGCAGTTCAAACAGCATCGGATACTTTGTTTCAGAACTTCCTCTTTCCTGATGGTGTTTCCCGTACGAGCATTCCCACCGCACCAGCGCTGCTGTCTGGCCGTCACAAACTTGACGCCAAACAATTATCTGCTGTTCGTCAAATTTTAAGCATTAAGGGCTCACCACCTTACTTGGTGGCTGGCCAGCTTTGTGTTGAAAGGAACGTTTTTAGGCCGTCGAGAACTGGAGCAGTTGTTTGTGAAGCAGTGCACCAGTTATGTCAAACCTCACTCAAAAATAGGATTCTGATATGTGCTCCTAGTAACAGCTGTTGTGATGGGATTATGAGAAGCTTGTTGAAAGTGATTCCAGAGTCAGATATGTTTCGAGCCAACGCTGCATTCCGTGAGAAAGATGAGGTGCCTGATGACATCCTCCCATCATGCCTTTACGAAGACCCTTATTTCTCTTGTCCTCCAACTGAGAAGCTTAAAAAATTCAGGGTGATTTTCTCGACTCTCATGAGTAGCTTTCGGCTACATGATAAAGGCCTAACTTCTGGACATTTTAGTCATATTTTTCTGGTAGATGCTTCATCTGCCATTGAGCCAGAAACAGCAGTGGCCTTAACTAATTTTGCAGAAAAAAGTACTACTGTTATAGTCACTGGTCAACCAGGAGATAATTCACGTTGGGTTCGAGCAGACATGGCAAGGCAAAAGGGACTGAAGATTTCATACTTCGAGAGACTTCTCAAGTCAAGGCCATATAGAAGCCTCAACCCAATGCTTATCACACAACTGGACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

689

Amino Acids

76.54

Weight (kDa)

9.36

Isoelectric Point (pI)

66.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 69, 1145
AasI GACNNNNNNGTC 1 cut(s) 1824
AccB1I GGYRCC 1 cut(s) 1675
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 590
AciI CCGC 3 cut(s) 118, 257, 1353
AclI AACGTT 1 cut(s) 1479
AcoI YGGCCR 4 cut(s) 686, 1070, 1372, 1456
AcsI RAATTY 8 cut(s) 102, 299, 416, 1040, 1181, 1193, 1416, 1751
AcuI CTGAAG 3 cut(s) 948, 1001, 2003
AcyI GRCGYC 1 cut(s) 1389
AfaI GTAC 4 cut(s) 280, 1117, 1339, 1906
AfeI AGCGCT 1 cut(s) 1362
AfiI CCNNNNNNNGG 2 cut(s) 680, 684
AjnI CCWGG 1 cut(s) 1930
AjuI GAANNNNNNNTTGG 4 cut(s) 298, 330, 1640, 1672
AluBI AGCT 9 cut(s) 358, 505, 1236, 1268, 1462, 1584, 1608, 1744, 1785
AluI AGCT 9 cut(s) 358, 505, 1236, 1268, 1462, 1584, 1608, 1744, 1785
Alw21I GWGCWC 3 cut(s) 1270, 1527, 1573
Alw26I GTCTC 2 cut(s) 888, 1996
Alw44I GTGCAC 1 cut(s) 1523
AlwNI CAGNNNCTG 1 cut(s) 880
Ama87I CYCGRG 1 cut(s) 679
Aor51HI AGCGCT 1 cut(s) 1362
AoxI GGCC 9 cut(s) 686, 1070, 1106, 1372, 1456, 1487, 1804, 1878, 2018
ApaLI GTGCAC 1 cut(s) 1523
ApeKI GCWGC 6 cut(s) 259, 358, 505, 911, 1363, 1652
ApoI RAATTY 8 cut(s) 102, 299, 416, 1040, 1181, 1193, 1416, 1751
Asp700I GAANNNNTTC 2 cut(s) 559, 1031
AspLEI GCGC 1 cut(s) 1363
AspS9I GGNCC 1 cut(s) 2059
AsuHPI GGTGA 6 cut(s) 171, 528, 663, 1262, 1428, 1771
AvaI CYCGRG 1 cut(s) 679
AvaII GGWCC 1 cut(s) 2059
AxyI CCTNAGG 2 cut(s) 612, 822
BaeGI GKGCMC 1 cut(s) 1527
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BalI TGGCCA 1 cut(s) 1458
BanI GGYRCC 1 cut(s) 1675
BanII GRGCYC 2 cut(s) 1270, 1436
BarI GAAGNNNNNNTAC 2 cut(s) 1976, 2008
BbsI GAAGAC 2 cut(s) 687, 1716
Bbv12I GWGCWC 3 cut(s) 1270, 1527, 1573
BbvI GCAGC 6 cut(s) 246, 345, 492, 898, 1350, 1639
BceAI ACGGC 3 cut(s) 701, 1359, 1474
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 1 cut(s) 1932
BciVI GTATCC 1 cut(s) 1288
BclI TGATCA 2 cut(s) 460, 840
BcoDI GTCTC 2 cut(s) 888, 1996
BfaI CTAG 2 cut(s) 567, 1575
BfmI CTRYAG 1 cut(s) 109
BfoI RGCGCY 1 cut(s) 1364
BfuI GTATCC 1 cut(s) 1288
BisI GCNGC 6 cut(s) 260, 359, 506, 912, 1364, 1653
BlpI GCTNAGC 1 cut(s) 1125
BlsI GCNGC 6 cut(s) 261, 360, 507, 913, 1365, 1654
BmcAI AGTACT 1 cut(s) 1906
Bme1390I CCNGG 1 cut(s) 1932
Bme18I GGWCC 1 cut(s) 2059
BmeT110I CYCGRG 1 cut(s) 679
BmgT120I GGNCC 1 cut(s) 2059
BmiI GGNNCC 1 cut(s) 1677
BmrFI CCNGG 1 cut(s) 1932
BmsI GCATC 4 cut(s) 407, 1004, 1298, 1834
BpiI GAAGAC 2 cut(s) 687, 1716
BpmI CTGGAG 2 cut(s) 135, 1521
Bpu10I CCTNAGC 2 cut(s) 231, 333
Bpu1102I GCTNAGC 1 cut(s) 1125
BpuEI CTTGAG 1 cut(s) 1994
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 1389
BsaJI CCNNGG 1 cut(s) 678
BsaXI ACNNNNNCTCC 6 cut(s) 271, 301, 694, 724, 1494, 1524
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 684
Bse1I ACTGG 6 cut(s) 194, 1504, 1528, 1927, 2061, 2062
Bse21I CCTNAGG 2 cut(s) 612, 822
Bse3DI GCAATG 1 cut(s) 473
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 1932
BseDI CCNNGG 1 cut(s) 678
BseGI GGATG 5 cut(s) 224, 539, 593, 674, 1686
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 2 cut(s) 680, 684
BseMI GCAATG 1 cut(s) 473
BseMII CTCAG 5 cut(s) 626, 759, 813, 1116, 1728
BseNI ACTGG 6 cut(s) 194, 1504, 1528, 1927, 2061, 2062
BseRI GAGGAG 2 cut(s) 567, 733
BseSI GKGCMC 1 cut(s) 1527
BseXI GCAGC 6 cut(s) 246, 345, 492, 898, 1350, 1639
BseYI CCCAGC 1 cut(s) 736
BshFI GGCC 9 cut(s) 688, 1072, 1108, 1374, 1458, 1489, 1806, 1880, 2020
BshNI GGYRCC 1 cut(s) 1675
BsiHKAI GWGCWC 3 cut(s) 1270, 1527, 1573
BsiHKCI CYCGRG 1 cut(s) 679
BsiWI CGTACG 1 cut(s) 1337
BslFI GGGAC 3 cut(s) 696, 1103, 1992
BslI CCNNNNNNNGG 2 cut(s) 680, 684
BsmAI GTCTC 2 cut(s) 888, 1996
BsmFI GGGAC 3 cut(s) 696, 1103, 1992
BsmI GAATGC 2 cut(s) 1344, 1655
BsnI GGCC 9 cut(s) 688, 1072, 1108, 1374, 1458, 1489, 1806, 1880, 2020
BsoBI CYCGRG 1 cut(s) 679
Bsp1286I GDGCHC 4 cut(s) 1270, 1436, 1527, 1573
Bsp143I GATC 2 cut(s) 460, 840
Bsp1720I GCTNAGC 1 cut(s) 1125
BspACI CCGC 3 cut(s) 118, 257, 1353
BspANI GGCC 9 cut(s) 688, 1072, 1108, 1374, 1458, 1489, 1806, 1880, 2020
BspCNI CTCAG 5 cut(s) 625, 758, 814, 1117, 1729
BspHI TCATGA 1 cut(s) 1776
BspLI GGNNCC 1 cut(s) 1677
BspT107I GGYRCC 1 cut(s) 1675
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 473
BsrI ACTGG 6 cut(s) 194, 1504, 1528, 1927, 2061, 2062
BssECI CCNNGG 1 cut(s) 678
BssMI GATC 2 cut(s) 460, 840
BssNI GRCGYC 1 cut(s) 1389
Bst2UI CCWGG 1 cut(s) 1932
Bst4CI ACNGT 2 cut(s) 588, 1912
Bst6I CTCTTC 2 cut(s) 924, 1017
BstACI GRCGYC 1 cut(s) 1389
BstC8I GCNNGC 3 cut(s) 690, 1456, 1460
BstF5I GGATG 5 cut(s) 224, 539, 593, 674, 1686
BstH2I RGCGCY 1 cut(s) 1364
BstHHI GCGC 1 cut(s) 1363
BstKTI GATC 2 cut(s) 463, 843
BstMAI GTCTC 2 cut(s) 888, 1996
BstMBI GATC 2 cut(s) 460, 840
BstMWI GCNNNNNNNGC 5 cut(s) 1274, 1431, 1652, 1853, 1964
BstNI CCWGG 1 cut(s) 1932
BstSCI CCNGG 1 cut(s) 1930
BstSFI CTRYAG 1 cut(s) 109
BstSLI GKGCMC 1 cut(s) 1527
BstV1I GCAGC 6 cut(s) 246, 345, 492, 898, 1350, 1639
BstV2I GAAGAC 2 cut(s) 687, 1716
Bsu36I CCTNAGG 2 cut(s) 612, 822
BsuI GTATCC 1 cut(s) 1288
BsuRI GGCC 9 cut(s) 688, 1072, 1108, 1374, 1458, 1489, 1806, 1880, 2020
BtgZI GCGATG 1 cut(s) 624
BtsCI GGATG 5 cut(s) 224, 539, 593, 674, 1686
BtsI GCAGTG 2 cut(s) 1527, 1881
BtsIMutI CAGTG 4 cut(s) 977, 1527, 1881, 1920
Cac8I GCNNGC 3 cut(s) 690, 1456, 1460
CaiI CAGNNNCTG 1 cut(s) 880
CciI TCATGA 1 cut(s) 1776
CfoI GCGC 1 cut(s) 1363
Cfr13I GGNCC 1 cut(s) 2059
CseI GACGC 2 cut(s) 681, 1397
Csp6I GTAC 4 cut(s) 279, 1116, 1338, 1905
CspCI CAANNNNNGTGG 2 cut(s) 1428, 1463
CviAII CATG 5 cut(s) 941, 1698, 1777, 1796, 1963
CviQI GTAC 4 cut(s) 279, 1116, 1338, 1905
DpnI GATC 2 cut(s) 462, 842
DpnII GATC 2 cut(s) 460, 840
DraI TTTAAA 1 cut(s) 604
DrdI GACNNNNNNGTC 1 cut(s) 1824
DseDI GACNNNNNNGTC 1 cut(s) 1824
EaeI YGGCCR 4 cut(s) 686, 1070, 1372, 1456
Eam1104I CTCTTC 2 cut(s) 924, 1017
EarI CTCTTC 2 cut(s) 924, 1017
Ecl136II GAGCTC 1 cut(s) 1268
Eco147I AGGCCT 1 cut(s) 1806
Eco24I GRGCYC 2 cut(s) 1270, 1436
Eco47I GGWCC 1 cut(s) 2059
Eco47III AGCGCT 1 cut(s) 1362
Eco53kI GAGCTC 1 cut(s) 1268
Eco57I CTGAAG 3 cut(s) 948, 1001, 2003
Eco81I CCTNAGG 2 cut(s) 612, 822
Eco88I CYCGRG 1 cut(s) 679
EcoICRI GAGCTC 1 cut(s) 1268
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 1930
EcoT22I ATGCAT 1 cut(s) 400
EcoT38I GRGCYC 2 cut(s) 1270, 1436
FaeI CATG 5 cut(s) 944, 1701, 1780, 1799, 1966
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 3 cut(s) 696, 1103, 1992
FatI CATG 5 cut(s) 940, 1697, 1776, 1795, 1962
FbaI TGATCA 2 cut(s) 460, 840
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 6 cut(s) 260, 359, 506, 912, 1364, 1653
FokI GGATG 5 cut(s) 211, 526, 580, 661, 1673
FriOI GRGCYC 2 cut(s) 1270, 1436
Fsp4HI GCNGC 6 cut(s) 260, 359, 506, 912, 1364, 1653
FspBI CTAG 2 cut(s) 567, 1575
GlaI GCGC 1 cut(s) 1362
GluI GCNGC 6 cut(s) 260, 359, 506, 912, 1364, 1653
GsaI CCCAGC 1 cut(s) 740
GsuI CTGGAG 2 cut(s) 135, 1521
HaeII RGCGCY 1 cut(s) 1364
HaeIII GGCC 9 cut(s) 688, 1072, 1108, 1374, 1458, 1489, 1806, 1880, 2020
HgaI GACGC 2 cut(s) 681, 1397
HhaI GCGC 1 cut(s) 1363
Hin1I GRCGYC 1 cut(s) 1389
Hin1II CATG 5 cut(s) 944, 1701, 1780, 1799, 1966
Hin6I GCGC 1 cut(s) 1361
HinP1I GCGC 1 cut(s) 1361
HincII GTYRAC 1 cut(s) 1928
HindII GTYRAC 1 cut(s) 1928
HindIII AAGCTT 2 cut(s) 1606, 1742
HinfI GANTC 8 cut(s) 76, 95, 817, 1052, 1558, 1621, 1628, 1771
HphI GGTGA 6 cut(s) 171, 528, 663, 1262, 1428, 1771
Hpy166II GTNNAC 4 cut(s) 591, 1003, 1525, 1928
Hpy188I TCNGA 8 cut(s) 75, 240, 554, 748, 1294, 1308, 1563, 1633
Hpy8I GTNNAC 4 cut(s) 591, 1003, 1525, 1928
Hpy99I CGWCG 1 cut(s) 1495
HpyAV CCTTC 4 cut(s) 166, 554, 570, 1042
HpyCH4III ACNGT 2 cut(s) 588, 1912
HpyCH4IV ACGT 2 cut(s) 1479, 1945
HpyCH4V TGCA 6 cut(s) 262, 398, 988, 1525, 1655, 1895
HpyF10VI GCNNNNNNNGC 5 cut(s) 1274, 1431, 1652, 1853, 1964
HpySE526I ACGT 2 cut(s) 1479, 1945
Hsp92I GRCGYC 1 cut(s) 1389
Hsp92II CATG 5 cut(s) 944, 1701, 1780, 1799, 1966
HspAI GCGC 1 cut(s) 1361
Ksp22I TGATCA 2 cut(s) 460, 840
Kzo9I GATC 2 cut(s) 460, 840
LmnI GCTCC 4 cut(s) 125, 1161, 1502, 1576
Lsp1109I GCAGC 6 cut(s) 246, 345, 492, 898, 1350, 1639
LweI GCATC 4 cut(s) 407, 1004, 1298, 1834
MaeI CTAG 2 cut(s) 567, 1575
MaeII ACGT 2 cut(s) 1479, 1945
MaeIII GTNAC 4 cut(s) 973, 1376, 1577, 1918
MalI GATC 2 cut(s) 462, 842
MbiI CCGCTC 1 cut(s) 120
MboI GATC 2 cut(s) 460, 840
MhlI GDGCHC 4 cut(s) 1270, 1436, 1527, 1573
MlsI TGGCCA 1 cut(s) 1458
MluNI TGGCCA 1 cut(s) 1458
MlyI GAGTC 2 cut(s) 1637, 1765
MmeI TCCRAC 3 cut(s) 263, 677, 1757
Mox20I TGGCCA 1 cut(s) 1458
Mph1103I ATGCAT 1 cut(s) 400
MroXI GAANNNNTTC 2 cut(s) 559, 1031
MscI TGGCCA 1 cut(s) 1458
MseI TTAA 8 cut(s) 378, 603, 720, 870, 1421, 1428, 1746, 1883
Msp20I TGGCCA 1 cut(s) 1458
MspA1I CMGCKG 2 cut(s) 259, 1584
MspR9I CCNGG 1 cut(s) 1932
Mva1269I GAATGC 2 cut(s) 1344, 1655
MvaI CCWGG 1 cut(s) 1932
MwoI GCNNNNNNNGC 5 cut(s) 1274, 1431, 1652, 1853, 1964
NdeII GATC 2 cut(s) 460, 840
NlaIII CATG 5 cut(s) 944, 1701, 1780, 1799, 1966
NlaIV GGNNCC 1 cut(s) 1677
NmuCI GTSAC 3 cut(s) 973, 1376, 1918
NsiI ATGCAT 1 cut(s) 400
PagI TCATGA 1 cut(s) 1776
PceI AGGCCT 1 cut(s) 1806
PcsI WCGNNNNNNNCGW 1 cut(s) 1951
PctI GAATGC 2 cut(s) 1344, 1655
PdmI GAANNNNTTC 2 cut(s) 559, 1031
PfeI GAWTC 6 cut(s) 76, 95, 817, 1052, 1558, 1621
Pfl23II CGTACG 1 cut(s) 1337
PflFI GACNNNGTC 1 cut(s) 1094
PkrI GCNGC 6 cut(s) 261, 360, 507, 913, 1365, 1654
PleI GAGTC 2 cut(s) 1636, 1765
PpsI GAGTC 2 cut(s) 1636, 1765
PsiI TTATAA 2 cut(s) 69, 1145
Psp124BI GAGCTC 1 cut(s) 1270
Psp1406I AACGTT 1 cut(s) 1479
Psp6I CCWGG 1 cut(s) 1930
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 1930
PspLI CGTACG 1 cut(s) 1337
PspN4I GGNNCC 1 cut(s) 1677
PspPI GGNCC 1 cut(s) 2059
PstNI CAGNNNCTG 1 cut(s) 880
PsyI GACNNNGTC 1 cut(s) 1094
PvuII CAGCTG 1 cut(s) 1584
RsaI GTAC 4 cut(s) 280, 1117, 1339, 1906
RsaNI GTAC 4 cut(s) 279, 1116, 1338, 1905
SacI GAGCTC 1 cut(s) 1270
SaqAI TTAA 8 cut(s) 378, 603, 720, 870, 1421, 1428, 1746, 1883
SatI GCNGC 6 cut(s) 260, 359, 506, 912, 1364, 1653
Sau3AI GATC 2 cut(s) 460, 840
Sau96I GGNCC 1 cut(s) 2059
ScaI AGTACT 1 cut(s) 1906
SchI GAGTC 2 cut(s) 1637, 1765
ScrFI CCNGG 1 cut(s) 1932
SduI GDGCHC 4 cut(s) 1270, 1436, 1527, 1573
SfaNI GCATC 4 cut(s) 407, 1004, 1298, 1834
SfcI CTRYAG 1 cut(s) 109
SinI GGWCC 1 cut(s) 2059
SmlI CTYRAG 1 cut(s) 2009
SmoI CTYRAG 1 cut(s) 2009
SseBI AGGCCT 1 cut(s) 1806
SsiI CCGC 3 cut(s) 118, 257, 1353
SspMI CTAG 2 cut(s) 567, 1575
SstI GAGCTC 1 cut(s) 1270
StuI AGGCCT 1 cut(s) 1806
StyD4I CCNGG 1 cut(s) 1930
TaaI ACNGT 2 cut(s) 588, 1912
TaiI ACGT 2 cut(s) 1482, 1948
TaqI TCGA 9 cut(s) 251, 1085, 1214, 1249, 1493, 1642, 1769, 1954, 1998
TatI WGTACW 2 cut(s) 278, 1904
TfiI GAWTC 6 cut(s) 76, 95, 817, 1052, 1558, 1621
Tru1I TTAA 8 cut(s) 378, 603, 720, 870, 1421, 1428, 1746, 1883
Tru9I TTAA 8 cut(s) 378, 603, 720, 870, 1421, 1428, 1746, 1883
TscAI CASTG 4 cut(s) 984, 1527, 1881, 1927
TseFI GTSAC 3 cut(s) 973, 1376, 1918
TseI GCWGC 6 cut(s) 259, 358, 505, 911, 1363, 1652
Tsp45I GTSAC 3 cut(s) 973, 1376, 1918
TspGWI ACGGA 1 cut(s) 1649
TspRI CASTG 4 cut(s) 984, 1527, 1881, 1927
Tth111I GACNNNGTC 1 cut(s) 1094
VneI GTGCAC 1 cut(s) 1523
VpaK11BI GGWCC 1 cut(s) 2059
XapI RAATTY 8 cut(s) 102, 299, 416, 1040, 1181, 1193, 1416, 1751
XbaI TCTAGA 1 cut(s) 566
XmiI GTMKAC 1 cut(s) 590
XmnI GAANNNNTTC 2 cut(s) 559, 1031
XspI CTAG 2 cut(s) 567, 1575
ZrmI AGTACT 1 cut(s) 1906
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.