RchiOBHm_Chr4g0446881

RNA helicase SDE3

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
66846541 .. 66849803
3263 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41436

Sequence Viewer

Length: 1908 bp
ATGGTTGACAAACAAGAATCGCAAACCTCCCCCCCAAGAAACAAATGGTCTCGCTTTATACCATTTTCATCATCCCCTCAGCCTCGTCCTGATGGGGTTTGGCTTAATCGGTATTGGTTGCTGCTAGTCATCGGGAGTTCAGCAATATTATGGTTGACAAACAAGAATCGCAAACCTCGCCCCCCTCCAGAAACGAAAGGGGTCGCTTCCCTGAAAAGCCACCTCAGCGTCAGCCAACATCATCTATATCCAGCCTCACCGAAAACCCCAACATATTTTTCTGGACCATCTCCATCTTCCCCAAAACACCCTCCAACATATTTTTCTACACCATCTCCGTCTCCATCTTCCCTGAAACCCCCAGCATATACTTCTAAACCATCTTCATCCTCAACTCCATCTTCCCCAAAACCCGCCCCCAGCATATATTTTTCTCTATCATCTCCGTCTCCATCTTCCCCAAAGCGCCCTCCTGTCTTTAAGTCAGTTCTATGCCCAGCCTCCTCCTTCTCAAATAATGATGATATAATTCAACAACAACGAGACAGGAAGAAAACAGCTTACGTATGTGTTGAAGAGGATTCATTACCTGTATTCACGATTCCTGAGGATATCAAAACCTTGATCAAGAACGAAACTGTGCCCAAAGTTCTCAACTGCTCTTTGTCTCCCACAACGTACAAGGATTACTTTGCTGCTCTGTTATATTCTGAAGATTTCTTCTTGGAGAAATGGAGTGATTTCCTTTTGAAGGCTGTGACATTGGAGTTGAATGAAGCTGAAATTCATAAAAATCAGAAAAAGCAAGATAAAGCCTTTGTGGCATTTGAGCTTGATTCTGTTCCCCAGAATAGGCCATTCCTCTTATCAAGGGACTTGGTCTTTGCACGACCAGTGGGTAGGAGTACTGCTGAGCCCTTTCAGGGTATCATTAATCGCATTGTAAGGAGCAAAACCGTTTTAGTTGAATTTGAAGATGCCTTTTATACTCATCATCATTCCAACAAAAAGTATGATGTCAGCTTCTCATTCAATAGAGTTTGCTTGAAAAGAGCTCACCAAGCAGTTAAAGATGCATCAGAGGACTTGTTTCAGAATTTCCTCTTCCCTCATTGTGACTCACGAGGTAGCATTCCTACTGCACCAGCTCTGCTTTCTACTACCTGTCATAAGCTCGATCGAGATCAACGTTCTGCAGTTGGACATATCTTAAGGATTCAGGGCTCACCTCCTTATGTAGTAACTGGTCCGGACTCTGTACCTGAAGGCAAATCTTTTGCATATTTTAGAGAACCTTCAAGAACTGGAGTAGTTGTTAGTGAAGCAGTATACCAATTATGTCAGAAGTCGCCAGAGTATCGCATTCTTATCTGTGCGCCCACTAACAGCTGCTGCGATGTGCTGATGAGAAGCTTGGGGAAGGTGATTCCAGAGTCGACTATGTTTCGTGCCAATGCTGCATTCCGTGAGAAAGAAGAGGTACCTGAGGATATCCTCCGCTCATCCCTTTACAAAGAGTCCTGTTTTTCTTGTCCTCCAATAGAGGAACTCCGGAAATACAGGGTGATTTTTTCGACTTTCATGAGTAGCTTTCGACTACATGATAAAGGCATAGCTGTTGGACATTTTAGCCATATTTTTCTGGTGGATGCTTCATCCGCTATTGAACCGGAAACATTGGTCGCCCTGACTAACTTTGCTGACAAGACTACTAGTGTTATAGTTACTGGTAAACCTGGAAACAGTCCGCGCTGGGTTCGCGCTGACATTGCAAGGAAAAAGGGACTCAAGATTTCATACTTTGAAAGACTCTGTAAGCTCTGGCCCTATAGAAGCCTCAGTCCAGTGTTCATCACACAATTGGACCTGAACCAAAACTCTGGCTCAGACTACCAAACAGCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

635

Amino Acids

71.39

Weight (kDa)

9.28

Isoelectric Point (pI)

61.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOV-10_beta-barrel PF21634 265 - 342 6.7e-10 Helicase MOV-10, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1480
AccB1I GGYRCC 1 cut(s) 1480
AccBSI CCGCTC 1 cut(s) 1500
AccI GTMKAC 2 cut(s) 1329, 1436
AccII CGCG 2 cut(s) 1750, 1761
AccIII TCCGGA 2 cut(s) 1249, 1551
AciI CCGC 4 cut(s) 414, 1498, 1659, 1748
AclI AACGTT 1 cut(s) 1189
AcsI RAATTY 3 cut(s) 783, 968, 1096
AcuI CTGAAG 2 cut(s) 732, 1284
AfaI GTAC 4 cut(s) 680, 907, 1260, 1482
AfiI CCNNNNNNNGG 3 cut(s) 751, 852, 923
AflII CTTAAG 1 cut(s) 1210
AhlI ACTAGT 1 cut(s) 1712
AjnI CCWGG 1 cut(s) 1735
AjuI GAANNNNNNNTTGG 6 cut(s) 262, 294, 307, 339, 1445, 1477
Alw21I GWGCWC 1 cut(s) 1057
Alw26I GTCTC 5 cut(s) 54, 345, 453, 537, 672
AlwNI CAGNNNCTG 1 cut(s) 1392
Aor13HI TCCGGA 2 cut(s) 1249, 1551
AoxI GGCC 2 cut(s) 854, 1823
ApeKI GCWGC 5 cut(s) 121, 695, 1389, 1392, 1457
ApoI RAATTY 3 cut(s) 783, 968, 1096
ArsI GACNNNNNNTTYG 2 cut(s) 866, 898
AseI ATTAAT 1 cut(s) 933
Asp718I GGTACC 1 cut(s) 1480
AspLEI GCGC 4 cut(s) 468, 1378, 1752, 1763
AspS9I GGNCC 4 cut(s) 284, 1247, 1824, 1864
AsuHPI GGTGA 5 cut(s) 249, 1049, 1218, 1435, 1576
AvaII GGWCC 3 cut(s) 284, 1247, 1864
AxyI CCTNAGG 2 cut(s) 606, 1485
BaeGI GKGCMC 1 cut(s) 645
BanI GGYRCC 1 cut(s) 1480
BanII GRGCYC 3 cut(s) 918, 1057, 1226
BauI CACGAG 1 cut(s) 1122
Bbv12I GWGCWC 1 cut(s) 1057
BbvCI CCTCAGC 2 cut(s) 78, 224
BbvI GCAGC 5 cut(s) 108, 682, 1376, 1379, 1444
BccI CCATC 8 cut(s) 86, 295, 301, 340, 352, 388, 406, 460
BciT130I CCWGG 1 cut(s) 1737
BclI TGATCA 1 cut(s) 624
BcoDI GTCTC 5 cut(s) 54, 345, 453, 537, 672
BcuI ACTAGT 1 cut(s) 1712
BfaI CTAG 2 cut(s) 125, 1713
BfmI CTRYAG 2 cut(s) 1194, 1828
BfoI RGCGCY 1 cut(s) 469
BfrI CTTAAG 1 cut(s) 1210
BglI GCCNNNNNGGC 1 cut(s) 821
BisI GCNGC 5 cut(s) 122, 696, 1390, 1393, 1458
BlpI GCTNAGC 1 cut(s) 912
BlsI GCNGC 5 cut(s) 123, 697, 1391, 1394, 1459
BmcAI AGTACT 1 cut(s) 907
Bme1390I CCNGG 1 cut(s) 1737
Bme18I GGWCC 3 cut(s) 284, 1247, 1864
BmgT120I GGNCC 4 cut(s) 284, 1247, 1824, 1864
BmiI GGNNCC 1 cut(s) 1482
BmrFI CCNGG 1 cut(s) 1737
BmsI GCATC 4 cut(s) 967, 1063, 1085, 1639
BpmI CTGGAG 2 cut(s) 171, 1326
Bpu10I CCTNAGC 2 cut(s) 78, 224
Bpu1102I GCTNAGC 1 cut(s) 912
BpuEI CTTGAG 1 cut(s) 1772
BsaAI YACGTR 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 1182
BsaI GGTCTC 1 cut(s) 54
BsaWI WCCGGW 3 cut(s) 1249, 1551, 1669
BsaXI ACNNNNNCTCC 4 cut(s) 319, 349, 1299, 1329
Bsc4I CCNNNNNNNGG 3 cut(s) 751, 852, 923
Bse1I ACTGG 5 cut(s) 893, 1249, 1309, 1732, 1844
Bse21I CCTNAGG 2 cut(s) 606, 1485
Bse3DI GCAATG 1 cut(s) 1767
Bse8I GATNNNNATC 1 cut(s) 1182
BseAI TCCGGA 2 cut(s) 1249, 1551
BseBI CCWGG 1 cut(s) 1737
BseGI GGATG 5 cut(s) 71, 386, 1502, 1654, 1655
BseJI GATNNNNATC 1 cut(s) 1182
BseLI CCNNNNNNNGG 3 cut(s) 751, 852, 923
BseMI GCAATG 1 cut(s) 1767
BseMII CTCAG 7 cut(s) 92, 238, 597, 903, 1476, 1852, 1899
BseNI ACTGG 5 cut(s) 893, 1249, 1309, 1732, 1844
BseRI GAGGAG 1 cut(s) 493
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 5 cut(s) 108, 682, 1376, 1379, 1444
BseYI CCCAGC 4 cut(s) 361, 419, 496, 1752
BsgI GTGCAG 1 cut(s) 1125
Bsh1236I CGCG 2 cut(s) 1750, 1761
Bsh1285I CGRYCG 1 cut(s) 1180
BshFI GGCC 2 cut(s) 856, 1825
BshNI GGYRCC 1 cut(s) 1480
BsiEI CGRYCG 1 cut(s) 1180
BsiHKAI GWGCWC 1 cut(s) 1057
BsiSI CCGG 3 cut(s) 1250, 1552, 1670
BslFI GGGAC 2 cut(s) 887, 1797
BslI CCNNNNNNNGG 3 cut(s) 751, 852, 923
BsmAI GTCTC 5 cut(s) 54, 345, 453, 537, 672
BsmBI CGTCTC 2 cut(s) 345, 453
BsmFI GGGAC 2 cut(s) 887, 1797
BsmI GAATGC 3 cut(s) 1131, 1362, 1460
BsnI GGCC 2 cut(s) 856, 1825
Bso31I GGTCTC 1 cut(s) 54
Bsp1286I GDGCHC 4 cut(s) 645, 918, 1057, 1226
Bsp13I TCCGGA 2 cut(s) 1249, 1551
Bsp143I GATC 3 cut(s) 624, 1177, 1183
Bsp1720I GCTNAGC 1 cut(s) 912
BspACI CCGC 4 cut(s) 414, 1498, 1659, 1748
BspANI GGCC 2 cut(s) 856, 1825
BspCNI CTCAG 7 cut(s) 91, 237, 598, 904, 1477, 1851, 1898
BspEI TCCGGA 2 cut(s) 1249, 1551
BspFNI CGCG 2 cut(s) 1750, 1761
BspHI TCATGA 1 cut(s) 1581
BspLI GGNNCC 1 cut(s) 1482
BspMAI CTGCAG 1 cut(s) 1198
BspT107I GGYRCC 1 cut(s) 1480
BspTI CTTAAG 1 cut(s) 1210
BspTNI GGTCTC 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 1500
BsrDI GCAATG 1 cut(s) 1767
BsrI ACTGG 5 cut(s) 893, 1249, 1309, 1732, 1844
BssMI GATC 3 cut(s) 624, 1177, 1183
BssNAI GTATAC 1 cut(s) 1330
BssSI CACGAG 1 cut(s) 1122
Bst1107I GTATAC 1 cut(s) 1330
Bst2BI CACGAG 1 cut(s) 1122
Bst2UI CCWGG 1 cut(s) 1737
Bst4CI ACNGT 3 cut(s) 640, 958, 1745
Bst6I CTCTTC 3 cut(s) 570, 1109, 1470
BstAFI CTTAAG 1 cut(s) 1210
BstBAI YACGTR 1 cut(s) 565
BstDEI CTNAG 7 cut(s) 78, 224, 606, 912, 1485, 1838, 1885
BstENI CCTNNNNNAGG 1 cut(s) 749
BstF5I GGATG 5 cut(s) 71, 386, 1502, 1654, 1655
BstFNI CGCG 2 cut(s) 1750, 1761
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 4 cut(s) 468, 1378, 1752, 1763
BstKTI GATC 3 cut(s) 627, 1180, 1186
BstMAI GTCTC 5 cut(s) 54, 345, 453, 537, 672
BstMBI GATC 3 cut(s) 624, 1177, 1183
BstMCI CGRYCG 1 cut(s) 1180
BstMWI GCNNNNNNNGC 8 cut(s) 177, 225, 821, 1061, 1457, 1658, 1758, 1769
BstNI CCWGG 1 cut(s) 1737
BstSCI CCNGG 1 cut(s) 1735
BstSFI CTRYAG 2 cut(s) 1194, 1828
BstSLI GKGCMC 1 cut(s) 645
BstSNI TACGTA 1 cut(s) 565
BstUI CGCG 2 cut(s) 1750, 1761
BstV1I GCAGC 5 cut(s) 108, 682, 1376, 1379, 1444
BstXI CCANNNNNNTGG 1 cut(s) 1880
BstZ17I GTATAC 1 cut(s) 1330
Bsu36I CCTNAGG 2 cut(s) 606, 1485
BsuRI GGCC 2 cut(s) 856, 1825
BtgZI GCGATG 1 cut(s) 1410
BtsCI GGATG 5 cut(s) 71, 386, 1502, 1654, 1655
BtsIMutI CAGTG 2 cut(s) 900, 1851
CaiI CAGNNNCTG 1 cut(s) 1392
CciI TCATGA 1 cut(s) 1581
CfoI GCGC 4 cut(s) 468, 1378, 1752, 1763
Cfr13I GGNCC 4 cut(s) 284, 1247, 1824, 1864
CseI GACGC 1 cut(s) 217
Csp6I GTAC 4 cut(s) 679, 906, 1259, 1481
CviAII CATG 2 cut(s) 1582, 1601
CviQI GTAC 4 cut(s) 679, 906, 1259, 1481
DdeI CTNAG 7 cut(s) 78, 224, 606, 912, 1485, 1838, 1885
DpnI GATC 3 cut(s) 626, 1179, 1185
DpnII GATC 3 cut(s) 624, 1177, 1183
Eam1104I CTCTTC 3 cut(s) 570, 1109, 1470
EarI CTCTTC 3 cut(s) 570, 1109, 1470
Ecl136II GAGCTC 1 cut(s) 1055
Eco105I TACGTA 1 cut(s) 565
Eco24I GRGCYC 3 cut(s) 918, 1057, 1226
Eco31I GGTCTC 1 cut(s) 54
Eco32I GATATC 2 cut(s) 613, 1492
Eco47I GGWCC 3 cut(s) 284, 1247, 1864
Eco53kI GAGCTC 1 cut(s) 1055
Eco57I CTGAAG 2 cut(s) 732, 1284
Eco81I CCTNAGG 2 cut(s) 606, 1485
EcoICRI GAGCTC 1 cut(s) 1055
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoRII CCWGG 1 cut(s) 1735
EcoRV GATATC 2 cut(s) 613, 1492
EcoT22I ATGCAT 1 cut(s) 1078
EcoT38I GRGCYC 3 cut(s) 918, 1057, 1226
Esp3I CGTCTC 2 cut(s) 345, 453
FaeI CATG 2 cut(s) 1585, 1604
FalI AAGNNNNNCTT 2 cut(s) 674, 706
FaqI GGGAC 2 cut(s) 887, 1797
FatI CATG 2 cut(s) 1581, 1600
FauI CCCGC 1 cut(s) 421
FbaI TGATCA 1 cut(s) 624
FblI GTMKAC 2 cut(s) 1329, 1436
Fnu4HI GCNGC 5 cut(s) 122, 696, 1390, 1393, 1458
FokI GGATG 5 cut(s) 58, 373, 1489, 1642, 1661
FriOI GRGCYC 3 cut(s) 918, 1057, 1226
Fsp4HI GCNGC 5 cut(s) 122, 696, 1390, 1393, 1458
FspBI CTAG 2 cut(s) 125, 1713
GlaI GCGC 4 cut(s) 467, 1377, 1751, 1762
GluI GCNGC 5 cut(s) 122, 696, 1390, 1393, 1458
GsaI CCCAGC 4 cut(s) 365, 423, 500, 1756
GsuI CTGGAG 2 cut(s) 171, 1326
HaeII RGCGCY 1 cut(s) 469
HaeIII GGCC 2 cut(s) 856, 1825
HapII CCGG 3 cut(s) 1250, 1552, 1670
HgaI GACGC 1 cut(s) 217
HhaI GCGC 4 cut(s) 468, 1378, 1752, 1763
Hin1II CATG 2 cut(s) 1585, 1604
Hin6I GCGC 4 cut(s) 466, 1376, 1750, 1761
HinP1I GCGC 4 cut(s) 466, 1376, 1750, 1761
HincII GTYRAC 3 cut(s) 7, 156, 1437
HindII GTYRAC 3 cut(s) 7, 156, 1437
HindIII AAGCTT 1 cut(s) 1411
HpaII CCGG 3 cut(s) 1250, 1552, 1670
HphI GGTGA 5 cut(s) 249, 1049, 1218, 1435, 1576
Hpy166II GTNNAC 5 cut(s) 7, 156, 1330, 1437, 1733
Hpy188I TCNGA 7 cut(s) 712, 798, 1081, 1095, 1344, 1888, 1907
Hpy8I GTNNAC 5 cut(s) 7, 156, 1330, 1437, 1733
HpyAV CCTTC 5 cut(s) 517, 745, 1259, 1305, 1414
HpyCH4III ACNGT 3 cut(s) 640, 958, 1745
HpyCH4IV ACGT 3 cut(s) 564, 677, 1189
HpyCH4V TGCA 7 cut(s) 887, 1076, 1142, 1196, 1280, 1460, 1772
HpyF10VI GCNNNNNNNGC 8 cut(s) 177, 225, 821, 1061, 1457, 1658, 1758, 1769
HpyF3I CTNAG 7 cut(s) 78, 224, 606, 912, 1485, 1838, 1885
HpySE526I ACGT 3 cut(s) 564, 677, 1189
Hsp92II CATG 2 cut(s) 1585, 1604
HspAI GCGC 4 cut(s) 466, 1376, 1750, 1761
Kpn2I TCCGGA 2 cut(s) 1249, 1551
KpnI GGTACC 1 cut(s) 1484
Ksp22I TGATCA 1 cut(s) 624
Kzo9I GATC 3 cut(s) 624, 1177, 1183
LmnI GCTCC 1 cut(s) 948
Lsp1109I GCAGC 5 cut(s) 108, 682, 1376, 1379, 1444
LweI GCATC 4 cut(s) 967, 1063, 1085, 1639
MaeI CTAG 2 cut(s) 125, 1713
MaeII ACGT 3 cut(s) 564, 677, 1189
MaeIII GTNAC 4 cut(s) 757, 1115, 1240, 1723
MalI GATC 3 cut(s) 626, 1179, 1185
MbiI CCGCTC 1 cut(s) 1500
MboI GATC 3 cut(s) 624, 1177, 1183
MfeI CAATTG 1 cut(s) 1859
MhlI GDGCHC 4 cut(s) 645, 918, 1057, 1226
MluCI AATT 6 cut(s) 528, 783, 968, 1096, 1334, 1859
MlyI GAGTC 6 cut(s) 1112, 1247, 1442, 1526, 1779, 1803
MmeI TCCRAC 4 cut(s) 338, 1026, 1180, 1600
Mph1103I ATGCAT 1 cut(s) 1078
MroI TCCGGA 2 cut(s) 1249, 1551
MseI TTAA 5 cut(s) 105, 480, 933, 1068, 1211
MspA1I CMGCKG 1 cut(s) 1389
MspCI CTTAAG 1 cut(s) 1210
MspI CCGG 3 cut(s) 1250, 1552, 1670
MspR9I CCNGG 1 cut(s) 1737
MunI CAATTG 1 cut(s) 1859
Mva1269I GAATGC 3 cut(s) 1131, 1362, 1460
MvaI CCWGG 1 cut(s) 1737
MvnI CGCG 2 cut(s) 1750, 1761
MwoI GCNNNNNNNGC 8 cut(s) 177, 225, 821, 1061, 1457, 1658, 1758, 1769
NdeII GATC 3 cut(s) 624, 1177, 1183
NlaIII CATG 2 cut(s) 1585, 1604
NlaIV GGNNCC 1 cut(s) 1482
NmuCI GTSAC 2 cut(s) 757, 1115
NsiI ATGCAT 1 cut(s) 1078
PagI TCATGA 1 cut(s) 1581
PcsI WCGNNNNNNNCGW 1 cut(s) 1186
PctI GAATGC 3 cut(s) 1131, 1362, 1460
PfeI GAWTC 7 cut(s) 17, 166, 581, 601, 836, 1216, 1426
PflFI GACNNNGTC 1 cut(s) 878
PkrI GCNGC 5 cut(s) 123, 697, 1391, 1394, 1459
Ple19I CGATCG 1 cut(s) 1180
PleI GAGTC 6 cut(s) 1112, 1247, 1441, 1525, 1779, 1803
PpsI GAGTC 6 cut(s) 1112, 1247, 1441, 1525, 1779, 1803
Ppu21I YACGTR 1 cut(s) 565
PshBI ATTAAT 1 cut(s) 933
Psp124BI GAGCTC 1 cut(s) 1057
Psp1406I AACGTT 1 cut(s) 1189
Psp6I CCWGG 1 cut(s) 1735
PspFI CCCAGC 4 cut(s) 361, 419, 496, 1752
PspGI CCWGG 1 cut(s) 1735
PspN4I GGNNCC 1 cut(s) 1482
PspPI GGNCC 4 cut(s) 284, 1247, 1824, 1864
PstI CTGCAG 1 cut(s) 1198
PstNI CAGNNNCTG 1 cut(s) 1392
PsyI GACNNNGTC 1 cut(s) 878
PvuI CGATCG 1 cut(s) 1180
PvuII CAGCTG 1 cut(s) 1389
RsaI GTAC 4 cut(s) 680, 907, 1260, 1482
RsaNI GTAC 4 cut(s) 679, 906, 1259, 1481
SacI GAGCTC 1 cut(s) 1057
SalI GTCGAC 1 cut(s) 1435
SaqAI TTAA 5 cut(s) 105, 480, 933, 1068, 1211
SatI GCNGC 5 cut(s) 122, 696, 1390, 1393, 1458
Sau3AI GATC 3 cut(s) 624, 1177, 1183
Sau96I GGNCC 4 cut(s) 284, 1247, 1824, 1864
ScaI AGTACT 1 cut(s) 907
SchI GAGTC 6 cut(s) 1112, 1247, 1442, 1526, 1779, 1803
ScrFI CCNGG 1 cut(s) 1737
SduI GDGCHC 4 cut(s) 645, 918, 1057, 1226
SfaNI GCATC 4 cut(s) 967, 1063, 1085, 1639
SfcI CTRYAG 2 cut(s) 1194, 1828
SinI GGWCC 3 cut(s) 284, 1247, 1864
SmlI CTYRAG 2 cut(s) 1210, 1787
SmoI CTYRAG 2 cut(s) 1210, 1787
SnaBI TACGTA 1 cut(s) 565
SpeI ACTAGT 1 cut(s) 1712
Sse9I AATT 6 cut(s) 528, 783, 968, 1096, 1334, 1859
SsiI CCGC 4 cut(s) 414, 1498, 1659, 1748
SspI AATATT 1 cut(s) 147
SspMI CTAG 2 cut(s) 125, 1713
SstI GAGCTC 1 cut(s) 1057
StyD4I CCNGG 1 cut(s) 1735
TaaI ACNGT 3 cut(s) 640, 958, 1745
TaiI ACGT 3 cut(s) 567, 680, 1192
TaqI TCGA 5 cut(s) 1176, 1180, 1436, 1574, 1594
TasI AATT 6 cut(s) 528, 783, 968, 1096, 1334, 1859
TatI WGTACW 1 cut(s) 905
TfiI GAWTC 7 cut(s) 17, 166, 581, 601, 836, 1216, 1426
Tru1I TTAA 5 cut(s) 105, 480, 933, 1068, 1211
Tru9I TTAA 5 cut(s) 105, 480, 933, 1068, 1211
TscAI CASTG 2 cut(s) 900, 1851
TseFI GTSAC 2 cut(s) 757, 1115
TseI GCWGC 5 cut(s) 121, 695, 1389, 1392, 1457
Tsp45I GTSAC 2 cut(s) 757, 1115
TspDTI ATGAA 9 cut(s) 57, 375, 573, 776, 789, 1570, 1644, 1785, 1840
TspGWI ACGGA 3 cut(s) 327, 435, 1454
TspRI CASTG 2 cut(s) 900, 1851
Tth111I GACNNNGTC 1 cut(s) 878
Vha464I CTTAAG 1 cut(s) 1210
VpaK11BI GGWCC 3 cut(s) 284, 1247, 1864
VspI ATTAAT 1 cut(s) 933
XagI CCTNNNNNAGG 1 cut(s) 749
XapI RAATTY 3 cut(s) 783, 968, 1096
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
XmiI GTMKAC 2 cut(s) 1329, 1436
XspI CTAG 2 cut(s) 125, 1713
ZrmI AGTACT 1 cut(s) 907
Zsp2I ATGCAT 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.