Rroxscaffold_5G00348280

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
20357683 .. 20362666
4984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348280.1

Sequence Viewer

Length: 219 bp
ATGAGGCGTCGGGAATCTGAAGTACGATTTCTATTGGAACCCAAAAAAGTGAAGGCGACGCCTCAATGCCTTGAGGCACTCGCCTCGCGAGGCTCTAGGTGGTCGCCTTCGCCTTCGCTTTCGCATTTGAAAACATTGGATGTGAGAGTTGGTCCAAATGTCCGCTTCAACTACTTTGCACATCCCTTGGACCTTGCTCGCGTTGTGTTTACGGCATGA

Protein Analysis

72

Amino Acids

8.23

Weight (kDa)

10.86

Isoelectric Point (pI)

61.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 88, 201
AciI CCGC 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 39
AcyI GRCGYC 2 cut(s) 7, 59
AfaI GTAC 1 cut(s) 24
AgsI TTSAA 2 cut(s) 130, 169
AspS9I GGNCC 2 cut(s) 152, 190
AvaII GGWCC 2 cut(s) 152, 190
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BfaI CTAG 1 cut(s) 96
Bme18I GGWCC 2 cut(s) 152, 190
BmgT120I GGNCC 2 cut(s) 152, 190
BmiI GGNNCC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 92
BsaHI GRCGYC 2 cut(s) 7, 59
BsaJI CCNNGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 145, 181
Bsh1236I CGCG 2 cut(s) 88, 201
Bsp68I TCGCGA 1 cut(s) 88
BspACI CCGC 1 cut(s) 163
BspFNI CGCG 2 cut(s) 88, 201
BspLI GGNNCC 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 186
BssNI GRCGYC 2 cut(s) 7, 59
BssT1I CCWWGG 1 cut(s) 186
BstACI GRCGYC 2 cut(s) 7, 59
BstC8I GCNNGC 1 cut(s) 199
BstF5I GGATG 2 cut(s) 145, 181
BstFNI CGCG 2 cut(s) 88, 201
BstUI CGCG 2 cut(s) 88, 201
BtsCI GGATG 2 cut(s) 145, 181
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 152, 190
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 23
CviAII CATG 1 cut(s) 216
CviJI RGCY 1 cut(s) 93
CviKI_1 RGCY 1 cut(s) 93
CviQI GTAC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 152, 190
Eco57I CTGAAG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 219
FaiI YATR 1 cut(s) 217
FatI CATG 1 cut(s) 215
FokI GGATG 2 cut(s) 152, 168
FspBI CTAG 1 cut(s) 96
HgaI GACGC 1 cut(s) 67
Hin1I GRCGYC 2 cut(s) 7, 59
Hin1II CATG 1 cut(s) 219
HinfI GANTC 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 11, 87
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 2 cut(s) 12, 61
HpyAV CCTTC 3 cut(s) 46, 117, 123
HpyCH4V TGCA 1 cut(s) 179
Hsp92I GRCGYC 2 cut(s) 7, 59
Hsp92II CATG 1 cut(s) 219
MaeI CTAG 1 cut(s) 96
MnlI CCTC 4 cut(s) 67, 72, 83, 94
MvnI CGCG 2 cut(s) 88, 201
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 39
NruI TCGCGA 1 cut(s) 88
PfeI GAWTC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 152, 190
RruI TCGCGA 1 cut(s) 88
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
Sau96I GGNCC 2 cut(s) 152, 190
SetI ASST 2 cut(s) 101, 195
SinI GGWCC 2 cut(s) 152, 190
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SsiI CCGC 1 cut(s) 163
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 186
TfiI GAWTC 1 cut(s) 14
VpaK11BI GGWCC 2 cut(s) 152, 190
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.