Rh4BG084700

RNA helicase SDE3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000595
Physical Location & Seq
Forward (+)
14629974 .. 14631133
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG084700.1

Sequence Viewer

Length: 372 bp
ATGGTATTGGAGTTGCGAGAAGAAGAAATTTATAATTATAAAACTCAAGAGAAGGAAAGAAAAACCTTTGTTGCATTTGCGATTGATTCTGTTCCTGAGAGACGGCTATTTCTCTATTCGAGGGACTTGGTGTATGTACGACCATCAGATAGGGATACTGAGCACTTCCAGATGAAGACGGATAATCAGGGCTCACCACCTTACCTAGTAGCCGGCGAACTCTCTGTTGAATTGAAAAACCTTTCTGAACCATCGAGGACTGGACTGGCTATTTGTGAAGCAATACTCCAGGCGTTGCGATGTGCTTCTGAGAAGCTTGATGGAAGTGATTCCAGAGTCGGATATGTTTCGAGCCAACGCTGCATTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.09

Weight (kDa)

5.26

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 33, 39
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 1 cut(s) 138
AgsI TTSAA 2 cut(s) 230, 235
AjnI CCWGG 1 cut(s) 288
AjuI GAANNNNNNNTTGG 1 cut(s) 348
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 360
ApoI RAATTY 1 cut(s) 27
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
Asp700I GAANNNNTTC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 186
BanII GRGCYC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 347
BccI CCATC 3 cut(s) 151, 259, 314
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 290
BciVI GTATCC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 2 cut(s) 265, 270
BseBI CCWGG 1 cut(s) 290
BseMII CTCAG 3 cut(s) 87, 150, 300
BseNI ACTGG 2 cut(s) 265, 270
BseXI GCAGC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 165, 194
BspCNI CTCAG 3 cut(s) 88, 151, 301
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 2 cut(s) 265, 270
BssAI RCCGGY 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 3 cut(s) 96, 159, 309
BstMAI GTCTC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 1 cut(s) 182
BsuI GTATCC 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 212
Csp6I GTAC 1 cut(s) 137
CviJI RGCY 6 cut(s) 106, 192, 212, 269, 316, 354
CviKI_1 RGCY 6 cut(s) 106, 192, 212, 269, 316, 354
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 3 cut(s) 96, 159, 309
Eco24I GRGCYC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 94
FaiI YATR 4 cut(s) 33, 39, 135, 345
FaqI GGGAC 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 361
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 361
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 361
GsuI CTGGAG 1 cut(s) 272
HapII CCGG 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 3 cut(s) 86, 329, 336
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 186
Hpy188I TCNGA 4 cut(s) 148, 247, 310, 341
Hpy188III TCNNGA 4 cut(s) 47, 95, 169, 333
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 74, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 3 cut(s) 96, 159, 309
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
LpnPI CCDG 9 cut(s) 108, 173, 182, 226, 246, 251, 275, 302, 346
Lsp1109I GCAGC 1 cut(s) 347
MaeI CTAG 1 cut(s) 206
MboII GAAGA 3 cut(s) 32, 35, 187
MhlI GDGCHC 2 cut(s) 165, 194
MluCI AATT 3 cut(s) 27, 34, 230
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 2 cut(s) 114, 249
MroNI GCCGGC 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 328
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 360
NaeI GCCGGC 1 cut(s) 214
NgoMIV GCCGGC 1 cut(s) 212
PctI GAATGC 1 cut(s) 363
PdiI GCCGGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 86, 329
PkrI GCNGC 1 cut(s) 362
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
PsiI TTATAA 2 cut(s) 33, 39
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SatI GCNGC 1 cut(s) 361
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 2 cut(s) 165, 194
SetI ASST 5 cut(s) 68, 202, 207, 243, 318
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 3 cut(s) 27, 34, 230
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 288
TaqI TCGA 3 cut(s) 119, 254, 350
TasI AATT 3 cut(s) 27, 34, 230
TfiI GAWTC 2 cut(s) 86, 329
TseI GCWGC 1 cut(s) 360
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 2 cut(s) 194, 357
XapI RAATTY 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.