Rmu_sc0001753.1_g000013

RNA helicase SDE3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001753.1
OG0000595
Physical Location & Seq
Forward (+)
75164 .. 78225
3062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001753.1_g000013.1.cds

Sequence Viewer

Length: 2139 bp
atgagttatcggttgctgctggtcatcgggagttcagcaatattatggtggacatacaagaatcgcaaacctcgcacccccagaaacgacaggtctcgctttataccattttcatcatcccctcagcctcgtcctgatggggtatcggttgctgctggtcatcgggagttcagcaatattatggttgacaaacaagaatcgcaaacctcccccccccaagaaacaaatggtctcgctttataccattttcatcatcccctcagcctcgtcctgatggggtttggcttaataggtatcggttgctgctggtcatcgggacctcgtcctgatggggtttggcttaatcggtattggttgctgctagtcatcgggagttcagcaatattatggttgacaaacaagaatcgcaaacctcgtccccccccagaaacgaaaggggtcgcttccctgaaaagccacctcagcctcagccaacatcatctatatccaacctcaccgaaaaccccaacatatttttctagaccatctccatcttccccaaaacaccctccaacatatttttctacaccatctccgtctccatcttccccgaaacccccagcatatacttctaaaccctcaactccatcttccccaaaacccgcccccagcatatatttttctctatcatctccgtctccatcttccccaaagcgccctcctgtctttaagtcagttctatgcccagcctcctcctcctcctcaaataatgatgatataattcaacaacaacgagacaggaagaaaacagcttacgtatgtgttgaagaggattcattacctgtattcacgattcctgaggatatcaaaaccttgatcaagaacgaaactgtgcccaaagttctccactgctctttgtctcccacaacgtacaaggattactttgctgctctgttatattctgaagatttcttcttggagaaatggagtgatttccttttggaggctgtgacattggagttgaaggaagctgaaatttataaaaatcagaaaaaggaagataaagcctttgtggcatttgagcttgattctgtttcccagaataggccattcctcttatcaagggactttgtctttgcacgaccagtgggtaggagtactgctaagccctttcagggtatcattaatcgcattgtaaggagcaaaaccgttttagttgaatttgaagatgccttttatactcatcatcattccaacaaaaagtatgatgtcagcttctcattcaatagagtttgcttgaaaagagctcaccaagcagttaaagatgcatcagagtccttgtttcagaatttcctcttccctcattgtgactcaagaggtagcattcctactgcaccagctttgctttctactacctgtcataagctcgatcgagatcaacgttctgcagttggacatatcttaaggattcagggctcaccacctcatgtagtaactggtccggacgctgtacctgaaggcaaatcttttgcatatttaagagaaccttcaagaactggagtggttgttagtgaagcagtataccaattatgtcagaagtcgccagagtatcgcattcttatctgtgcgcccactaacagctgctgcgatgtgctgatgagaagcttggggaaggtgattccagagtcgactatgtttcgtgccaatgctgcattccgtgagaaagaagaggtacctgaggatatcctccgctcatccctttacaaagagtcctgtttttcttgtcctccaatagagaaactccgggaatacagggtgattttgtcgactttcatgagtagctttcgactacatgataaaggcatagctgttggacattttagccatatttttctggtggatgcttcatctgctattgagccggaaacattggtcgccctgactaactttgctgacaagactactagtgttatagttactggtaaacctggaaacagtccgcgcagggtttgctctgacattgcaaggaaaaagggactcaagatttcatactttgaaagactctgtaagctctggccctatagaagcctcagtcctgtgttcatcacacaattggacctgaaccaaaactctggctcagactaccaaacagctttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

712

Amino Acids

79.88

Weight (kDa)

9.35

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1020
Acc65I GGTACC 1 cut(s) 1711
AccB1I GGYRCC 1 cut(s) 1711
AccBSI CCGCTC 1 cut(s) 1731
AccI GTMKAC 3 cut(s) 1560, 1667, 1805
AccII CGCG 1 cut(s) 1981
AccIII TCCGGA 1 cut(s) 1480
AciI CCGC 3 cut(s) 642, 1729, 1979
AclI AACGTT 1 cut(s) 1420
AcsI RAATTY 3 cut(s) 1014, 1199, 1327
AcuI CTGAAG 2 cut(s) 963, 1515
AfaI GTAC 4 cut(s) 911, 1138, 1491, 1713
AfiI CCNNNNNNNGG 3 cut(s) 982, 1083, 1154
AflII CTTAAG 1 cut(s) 1441
AgsI TTSAA 9 cut(s) 764, 806, 1003, 1199, 1205, 1264, 1279, 1530, 2036
AhlI ACTAGT 1 cut(s) 1943
AjnI CCWGG 1 cut(s) 1966
AjuI GAANNNNNNNTTGG 6 cut(s) 499, 531, 544, 576, 1676, 1708
Alw21I GWGCWC 1 cut(s) 1288
Alw26I GTCTC 6 cut(s) 99, 236, 582, 681, 768, 903
AlwNI CAGNNNCTG 1 cut(s) 1623
Aor13HI TCCGGA 1 cut(s) 1480
AoxI GGCC 2 cut(s) 1085, 2054
ApeKI GCWGC 8 cut(s) 16, 152, 303, 358, 926, 1620, 1623, 1688
ApoI RAATTY 3 cut(s) 1014, 1199, 1327
ArsI GACNNNNNNTTYG 2 cut(s) 1097, 1129
AseI ATTAAT 1 cut(s) 1164
Asp718I GGTACC 1 cut(s) 1711
AspLEI GCGC 3 cut(s) 696, 1609, 1983
AspS9I GGNCC 4 cut(s) 317, 1478, 2055, 2095
AsuC2I CCSGG 1 cut(s) 1784
AsuHPI GGTGA 5 cut(s) 486, 1280, 1449, 1666, 1807
AvaII GGWCC 3 cut(s) 317, 1478, 2095
AxyI CCTNAGG 2 cut(s) 837, 1716
BaeGI GKGCMC 1 cut(s) 876
BanI GGYRCC 1 cut(s) 1711
BanII GRGCYC 2 cut(s) 1288, 1457
Bbv12I GWGCWC 1 cut(s) 1288
BbvCI CCTCAGC 4 cut(s) 123, 260, 461, 467
BbvI GCAGC 8 cut(s) 3, 139, 290, 345, 913, 1607, 1610, 1675
BccI CCATC 9 cut(s) 131, 268, 323, 532, 538, 577, 589, 634, 688
BciT130I CCWGG 1 cut(s) 1968
BclI TGATCA 1 cut(s) 855
BcnI CCSGG 1 cut(s) 1784
BcoDI GTCTC 6 cut(s) 99, 236, 582, 681, 768, 903
BcuI ACTAGT 1 cut(s) 1943
BfaI CTAG 3 cut(s) 362, 519, 1944
BfmI CTRYAG 2 cut(s) 1425, 2059
BfoI RGCGCY 1 cut(s) 697
BfrI CTTAAG 1 cut(s) 1441
BglI GCCNNNNNGGC 1 cut(s) 1052
BisI GCNGC 8 cut(s) 17, 153, 304, 359, 927, 1621, 1624, 1689
BlpI GCTNAGC 1 cut(s) 1143
BlsI GCNGC 8 cut(s) 18, 154, 305, 360, 928, 1622, 1625, 1690
BmcAI AGTACT 1 cut(s) 1138
Bme1390I CCNGG 2 cut(s) 1784, 1968
Bme18I GGWCC 3 cut(s) 317, 1478, 2095
BmgT120I GGNCC 4 cut(s) 317, 1478, 2055, 2095
BmiI GGNNCC 2 cut(s) 318, 1713
BmrFI CCNGG 2 cut(s) 1784, 1968
BmsI GCATC 4 cut(s) 1198, 1294, 1316, 1870
BpmI CTGGAG 1 cut(s) 1557
Bpu10I CCTNAGC 4 cut(s) 123, 260, 461, 467
Bpu1102I GCTNAGC 1 cut(s) 1143
BpuEI CTTGAG 2 cut(s) 1336, 2003
BpuMI CCSGG 1 cut(s) 1784
BsaAI YACGTR 1 cut(s) 796
BsaBI GATNNNNATC 1 cut(s) 1413
BsaI GGTCTC 2 cut(s) 99, 236
BsaWI WCCGGW 1 cut(s) 1480
BsaXI ACNNNNNCTCC 4 cut(s) 556, 586, 1530, 1560
Bsc4I CCNNNNNNNGG 3 cut(s) 982, 1083, 1154
Bse1I ACTGG 4 cut(s) 1124, 1480, 1540, 1963
Bse21I CCTNAGG 2 cut(s) 837, 1716
Bse3DI GCAATG 1 cut(s) 1998
Bse8I GATNNNNATC 1 cut(s) 1413
BseAI TCCGGA 1 cut(s) 1480
BseBI CCWGG 1 cut(s) 1968
BseGI GGATG 4 cut(s) 116, 253, 1733, 1885
BseJI GATNNNNATC 1 cut(s) 1413
BseLI CCNNNNNNNGG 3 cut(s) 982, 1083, 1154
BseMI GCAATG 1 cut(s) 1998
BseMII CTCAG 8 cut(s) 137, 274, 475, 481, 828, 1707, 2083, 2130
BseNI ACTGG 4 cut(s) 1124, 1480, 1540, 1963
BseRI GAGGAG 4 cut(s) 721, 724, 727, 730
BseSI GKGCMC 1 cut(s) 876
BseXI GCAGC 8 cut(s) 3, 139, 290, 345, 913, 1607, 1610, 1675
BseYI CCCAGC 3 cut(s) 598, 647, 724
BsgI GTGCAG 1 cut(s) 1356
Bsh1236I CGCG 1 cut(s) 1981
Bsh1285I CGRYCG 1 cut(s) 1411
BshFI GGCC 2 cut(s) 1087, 2056
BshNI GGYRCC 1 cut(s) 1711
BsiEI CGRYCG 1 cut(s) 1411
BsiHKAI GWGCWC 1 cut(s) 1288
BsiSI CCGG 3 cut(s) 1481, 1783, 1901
BslFI GGGAC 4 cut(s) 330, 402, 1118, 2028
BslI CCNNNNNNNGG 3 cut(s) 982, 1083, 1154
BsmAI GTCTC 6 cut(s) 99, 236, 582, 681, 768, 903
BsmBI CGTCTC 2 cut(s) 582, 681
BsmFI GGGAC 4 cut(s) 330, 402, 1118, 2028
BsmI GAATGC 3 cut(s) 1362, 1593, 1691
BsnI GGCC 2 cut(s) 1087, 2056
Bso31I GGTCTC 2 cut(s) 99, 236
Bsp1286I GDGCHC 3 cut(s) 876, 1288, 1457
Bsp13I TCCGGA 1 cut(s) 1480
Bsp143I GATC 3 cut(s) 855, 1408, 1414
Bsp1720I GCTNAGC 1 cut(s) 1143
BspACI CCGC 3 cut(s) 642, 1729, 1979
BspANI GGCC 2 cut(s) 1087, 2056
BspCNI CTCAG 8 cut(s) 136, 273, 474, 480, 829, 1708, 2082, 2129
BspEI TCCGGA 1 cut(s) 1480
BspFNI CGCG 1 cut(s) 1981
BspHI TCATGA 1 cut(s) 1812
BspLI GGNNCC 2 cut(s) 318, 1713
BspMAI CTGCAG 1 cut(s) 1429
BspT107I GGYRCC 1 cut(s) 1711
BspTI CTTAAG 1 cut(s) 1441
BspTNI GGTCTC 2 cut(s) 99, 236
BsrBI CCGCTC 1 cut(s) 1731
BsrDI GCAATG 1 cut(s) 1998
BsrI ACTGG 4 cut(s) 1124, 1480, 1540, 1963
BssMI GATC 3 cut(s) 855, 1408, 1414
BssNAI GTATAC 1 cut(s) 1561
Bst1107I GTATAC 1 cut(s) 1561
Bst2UI CCWGG 1 cut(s) 1968
Bst4CI ACNGT 3 cut(s) 871, 1189, 1976
Bst6I CTCTTC 3 cut(s) 801, 1340, 1701
BstAFI CTTAAG 1 cut(s) 1441
BstAPI GCANNNNNTGC 1 cut(s) 1989
BstBAI YACGTR 1 cut(s) 796
BstDEI CTNAG 9 cut(s) 123, 260, 461, 467, 837, 1143, 1716, 2069, 2116
BstENI CCTNNNNNAGG 1 cut(s) 980
BstF5I GGATG 4 cut(s) 116, 253, 1733, 1885
BstFNI CGCG 1 cut(s) 1981
BstH2I RGCGCY 1 cut(s) 697
BstHHI GCGC 3 cut(s) 696, 1609, 1983
BstKTI GATC 3 cut(s) 858, 1411, 1417
BstMAI GTCTC 6 cut(s) 99, 236, 582, 681, 768, 903
BstMBI GATC 3 cut(s) 855, 1408, 1414
BstMCI CGRYCG 1 cut(s) 1411
BstMWI GCNNNNNNNGC 7 cut(s) 72, 462, 1052, 1292, 1688, 1889, 1989
BstNI CCWGG 1 cut(s) 1968
BstSCI CCNGG 2 cut(s) 1782, 1966
BstSFI CTRYAG 2 cut(s) 1425, 2059
BstSLI GKGCMC 1 cut(s) 876
BstSNI TACGTA 1 cut(s) 796
BstUI CGCG 1 cut(s) 1981
BstV1I GCAGC 8 cut(s) 3, 139, 290, 345, 913, 1607, 1610, 1675
BstXI CCANNNNNNTGG 1 cut(s) 2111
BstZ17I GTATAC 1 cut(s) 1561
Bsu36I CCTNAGG 2 cut(s) 837, 1716
BsuRI GGCC 2 cut(s) 1087, 2056
BtgZI GCGATG 1 cut(s) 1641
BtsCI GGATG 4 cut(s) 116, 253, 1733, 1885
BtsI GCAGTG 1 cut(s) 886
BtsIMutI CAGTG 2 cut(s) 886, 1131
CaiI CAGNNNCTG 1 cut(s) 1623
CciI TCATGA 1 cut(s) 1812
CfoI GCGC 3 cut(s) 696, 1609, 1983
Cfr13I GGNCC 4 cut(s) 317, 1478, 2055, 2095
CseI GACGC 1 cut(s) 1493
Csp6I GTAC 4 cut(s) 910, 1137, 1490, 1712
CviAII CATG 3 cut(s) 1466, 1813, 1832
CviQI GTAC 4 cut(s) 910, 1137, 1490, 1712
DdeI CTNAG 9 cut(s) 123, 260, 461, 467, 837, 1143, 1716, 2069, 2116
DpnI GATC 3 cut(s) 857, 1410, 1416
DpnII GATC 3 cut(s) 855, 1408, 1414
Eam1104I CTCTTC 3 cut(s) 801, 1340, 1701
EarI CTCTTC 3 cut(s) 801, 1340, 1701
Ecl136II GAGCTC 1 cut(s) 1286
Eco105I TACGTA 1 cut(s) 796
Eco24I GRGCYC 2 cut(s) 1288, 1457
Eco31I GGTCTC 2 cut(s) 99, 236
Eco32I GATATC 2 cut(s) 844, 1723
Eco47I GGWCC 3 cut(s) 317, 1478, 2095
Eco53kI GAGCTC 1 cut(s) 1286
Eco57I CTGAAG 2 cut(s) 963, 1515
Eco81I CCTNAGG 2 cut(s) 837, 1716
EcoICRI GAGCTC 1 cut(s) 1286
EcoNI CCTNNNNNAGG 1 cut(s) 980
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 1966
EcoRV GATATC 2 cut(s) 844, 1723
EcoT22I ATGCAT 1 cut(s) 1309
EcoT38I GRGCYC 2 cut(s) 1288, 1457
Esp3I CGTCTC 2 cut(s) 582, 681
FaeI CATG 3 cut(s) 1469, 1816, 1835
FalI AAGNNNNNCTT 4 cut(s) 905, 937, 1510, 1542
FaqI GGGAC 4 cut(s) 330, 402, 1118, 2028
FatI CATG 3 cut(s) 1465, 1812, 1831
FauI CCCGC 1 cut(s) 649
FbaI TGATCA 1 cut(s) 855
FblI GTMKAC 3 cut(s) 1560, 1667, 1805
Fnu4HI GCNGC 8 cut(s) 17, 153, 304, 359, 927, 1621, 1624, 1689
FokI GGATG 4 cut(s) 103, 240, 1720, 1892
FriOI GRGCYC 2 cut(s) 1288, 1457
Fsp4HI GCNGC 8 cut(s) 17, 153, 304, 359, 927, 1621, 1624, 1689
FspBI CTAG 3 cut(s) 362, 519, 1944
GlaI GCGC 3 cut(s) 695, 1608, 1982
GluI GCNGC 8 cut(s) 17, 153, 304, 359, 927, 1621, 1624, 1689
GsaI CCCAGC 3 cut(s) 602, 651, 728
GsuI CTGGAG 1 cut(s) 1557
HaeII RGCGCY 1 cut(s) 697
HaeIII GGCC 2 cut(s) 1087, 2056
HapII CCGG 3 cut(s) 1481, 1783, 1901
HgaI GACGC 1 cut(s) 1493
HhaI GCGC 3 cut(s) 696, 1609, 1983
Hin1II CATG 3 cut(s) 1469, 1816, 1835
Hin6I GCGC 3 cut(s) 694, 1607, 1981
HinP1I GCGC 3 cut(s) 694, 1607, 1981
HincII GTYRAC 4 cut(s) 187, 393, 1668, 1806
HindII GTYRAC 4 cut(s) 187, 393, 1668, 1806
HindIII AAGCTT 1 cut(s) 1642
HpaII CCGG 3 cut(s) 1481, 1783, 1901
HphI GGTGA 5 cut(s) 486, 1280, 1449, 1666, 1807
Hpy166II GTNNAC 7 cut(s) 51, 187, 393, 1561, 1668, 1806, 1964
Hpy188I TCNGA 8 cut(s) 943, 1029, 1312, 1326, 1575, 1996, 2119, 2138
Hpy8I GTNNAC 7 cut(s) 51, 187, 393, 1561, 1668, 1806, 1964
HpyAV CCTTC 4 cut(s) 997, 1490, 1536, 1645
HpyCH4III ACNGT 3 cut(s) 871, 1189, 1976
HpyCH4IV ACGT 3 cut(s) 795, 908, 1420
HpyCH4V TGCA 7 cut(s) 1118, 1307, 1373, 1427, 1511, 1691, 2003
HpyF10VI GCNNNNNNNGC 7 cut(s) 72, 462, 1052, 1292, 1688, 1889, 1989
HpyF3I CTNAG 9 cut(s) 123, 260, 461, 467, 837, 1143, 1716, 2069, 2116
HpySE526I ACGT 3 cut(s) 795, 908, 1420
Hsp92II CATG 3 cut(s) 1469, 1816, 1835
HspAI GCGC 3 cut(s) 694, 1607, 1981
Kpn2I TCCGGA 1 cut(s) 1480
KpnI GGTACC 1 cut(s) 1715
Ksp22I TGATCA 1 cut(s) 855
Kzo9I GATC 3 cut(s) 855, 1408, 1414
LmnI GCTCC 1 cut(s) 1179
Lsp1109I GCAGC 8 cut(s) 3, 139, 290, 345, 913, 1607, 1610, 1675
LweI GCATC 4 cut(s) 1198, 1294, 1316, 1870
MaeI CTAG 3 cut(s) 362, 519, 1944
MaeII ACGT 3 cut(s) 795, 908, 1420
MaeIII GTNAC 4 cut(s) 988, 1346, 1471, 1954
MalI GATC 3 cut(s) 857, 1410, 1416
MbiI CCGCTC 1 cut(s) 1731
MboI GATC 3 cut(s) 855, 1408, 1414
MfeI CAATTG 1 cut(s) 2090
MhlI GDGCHC 3 cut(s) 876, 1288, 1457
MluCI AATT 6 cut(s) 759, 1014, 1199, 1327, 1565, 2090
MlyI GAGTC 6 cut(s) 1322, 1343, 1673, 1757, 2010, 2034
MmeI TCCRAC 5 cut(s) 512, 575, 1257, 1411, 1831
Mph1103I ATGCAT 1 cut(s) 1309
MroI TCCGGA 1 cut(s) 1480
MseI TTAA 7 cut(s) 287, 342, 708, 1164, 1299, 1442, 1517
MspA1I CMGCKG 1 cut(s) 1620
MspCI CTTAAG 1 cut(s) 1441
MspI CCGG 3 cut(s) 1481, 1783, 1901
MspR9I CCNGG 2 cut(s) 1784, 1968
MunI CAATTG 1 cut(s) 2090
Mva1269I GAATGC 3 cut(s) 1362, 1593, 1691
MvaI CCWGG 1 cut(s) 1968
MvnI CGCG 1 cut(s) 1981
MwoI GCNNNNNNNGC 7 cut(s) 72, 462, 1052, 1292, 1688, 1889, 1989
NciI CCSGG 1 cut(s) 1784
NdeII GATC 3 cut(s) 855, 1408, 1414
NlaIII CATG 3 cut(s) 1469, 1816, 1835
NlaIV GGNNCC 2 cut(s) 318, 1713
NmuCI GTSAC 2 cut(s) 988, 1346
NsiI ATGCAT 1 cut(s) 1309
PagI TCATGA 1 cut(s) 1812
PcsI WCGNNNNNNNCGW 2 cut(s) 412, 1417
PctI GAATGC 3 cut(s) 1362, 1593, 1691
PfeI GAWTC 8 cut(s) 61, 197, 403, 812, 832, 1067, 1447, 1657
PflFI GACNNNGTC 2 cut(s) 321, 1109
PfoI TCCNGGA 1 cut(s) 1782
PkrI GCNGC 8 cut(s) 18, 154, 305, 360, 928, 1622, 1625, 1690
Ple19I CGATCG 1 cut(s) 1411
PleI GAGTC 6 cut(s) 1321, 1343, 1672, 1756, 2010, 2034
PpsI GAGTC 6 cut(s) 1321, 1343, 1672, 1756, 2010, 2034
Ppu21I YACGTR 1 cut(s) 796
PpuMI RGGWCCY 1 cut(s) 317
PshBI ATTAAT 1 cut(s) 1164
PsiI TTATAA 1 cut(s) 1020
Psp124BI GAGCTC 1 cut(s) 1288
Psp1406I AACGTT 1 cut(s) 1420
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 1966
PspFI CCCAGC 3 cut(s) 598, 647, 724
PspGI CCWGG 1 cut(s) 1966
PspN4I GGNNCC 2 cut(s) 318, 1713
PspPI GGNCC 4 cut(s) 317, 1478, 2055, 2095
PspPPI RGGWCCY 1 cut(s) 317
PstI CTGCAG 1 cut(s) 1429
PstNI CAGNNNCTG 1 cut(s) 1623
PsyI GACNNNGTC 2 cut(s) 321, 1109
PvuI CGATCG 1 cut(s) 1411
PvuII CAGCTG 1 cut(s) 1620
RsaI GTAC 4 cut(s) 911, 1138, 1491, 1713
RsaNI GTAC 4 cut(s) 910, 1137, 1490, 1712
SacI GAGCTC 1 cut(s) 1288
SalI GTCGAC 2 cut(s) 1666, 1804
SaqAI TTAA 7 cut(s) 287, 342, 708, 1164, 1299, 1442, 1517
SatI GCNGC 8 cut(s) 17, 153, 304, 359, 927, 1621, 1624, 1689
Sau3AI GATC 3 cut(s) 855, 1408, 1414
Sau96I GGNCC 4 cut(s) 317, 1478, 2055, 2095
ScaI AGTACT 1 cut(s) 1138
SchI GAGTC 6 cut(s) 1322, 1343, 1673, 1757, 2010, 2034
ScrFI CCNGG 2 cut(s) 1784, 1968
SduI GDGCHC 3 cut(s) 876, 1288, 1457
SfaNI GCATC 4 cut(s) 1198, 1294, 1316, 1870
SfcI CTRYAG 2 cut(s) 1425, 2059
SinI GGWCC 3 cut(s) 317, 1478, 2095
SmlI CTYRAG 3 cut(s) 1351, 1441, 2018
SmoI CTYRAG 3 cut(s) 1351, 1441, 2018
SnaBI TACGTA 1 cut(s) 796
SpeI ACTAGT 1 cut(s) 1943
Sse9I AATT 6 cut(s) 759, 1014, 1199, 1327, 1565, 2090
SsiI CCGC 3 cut(s) 642, 1729, 1979
SspI AATATT 3 cut(s) 42, 178, 384
SspMI CTAG 3 cut(s) 362, 519, 1944
SstI GAGCTC 1 cut(s) 1288
StyD4I CCNGG 2 cut(s) 1782, 1966
TaaI ACNGT 3 cut(s) 871, 1189, 1976
TaiI ACGT 3 cut(s) 798, 911, 1423
TaqI TCGA 5 cut(s) 1407, 1411, 1667, 1805, 1825
TasI AATT 6 cut(s) 759, 1014, 1199, 1327, 1565, 2090
TatI WGTACW 1 cut(s) 1136
TfiI GAWTC 8 cut(s) 61, 197, 403, 812, 832, 1067, 1447, 1657
Tru1I TTAA 7 cut(s) 287, 342, 708, 1164, 1299, 1442, 1517
Tru9I TTAA 7 cut(s) 287, 342, 708, 1164, 1299, 1442, 1517
TscAI CASTG 2 cut(s) 893, 1131
TseFI GTSAC 2 cut(s) 988, 1346
TseI GCWGC 8 cut(s) 16, 152, 303, 358, 926, 1620, 1623, 1688
Tsp45I GTSAC 2 cut(s) 988, 1346
TspDTI ATGAA 7 cut(s) 102, 239, 804, 1801, 1875, 2016, 2071
TspGWI ACGGA 3 cut(s) 564, 663, 1685
TspRI CASTG 2 cut(s) 893, 1131
Tth111I GACNNNGTC 2 cut(s) 321, 1109
Vha464I CTTAAG 1 cut(s) 1441
VpaK11BI GGWCC 3 cut(s) 317, 1478, 2095
VspI ATTAAT 1 cut(s) 1164
XagI CCTNNNNNAGG 1 cut(s) 980
XapI RAATTY 3 cut(s) 1014, 1199, 1327
XbaI TCTAGA 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XmiI GTMKAC 3 cut(s) 1560, 1667, 1805
XspI CTAG 3 cut(s) 362, 519, 1944
ZrmI AGTACT 1 cut(s) 1138
Zsp2I ATGCAT 1 cut(s) 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.