RNA helicase SDE3
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 950 |
| Acc65I | GGTACC | 1 cut(s) | 1609 |
| AccB1I | GGYRCC | 1 cut(s) | 1609 |
| AccI | GTMKAC | 1 cut(s) | 885 |
| AciI | CCGC | 4 cut(s) | 567, 590, 712, 1352 |
| AclI | AACGTT | 1 cut(s) | 356 |
| AclWI | GGATC | 3 cut(s) | 12, 74, 640 |
| AcoI | YGGCCR | 1 cut(s) | 1899 |
| AcuI | CTGAAG | 1 cut(s) | 110 |
| AcyI | GRCGYC | 2 cut(s) | 1015, 1740 |
| AfaI | GTAC | 3 cut(s) | 588, 1393, 1611 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 711, 1082 |
| AflII | CTTAAG | 2 cut(s) | 451, 667 |
| AflIII | ACRYGT | 3 cut(s) | 506, 697, 1569 |
| AgsI | TTSAA | 7 cut(s) | 35, 931, 991, 1229, 1546, 1918, 1934 |
| AjnI | CCWGG | 1 cut(s) | 1901 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1428, 1460 |
| Alw21I | GWGCWC | 2 cut(s) | 1216, 1507 |
| Alw26I | GTCTC | 4 cut(s) | 228, 837, 1006, 1796 |
| Alw44I | GTGCAC | 1 cut(s) | 1503 |
| AlwI | GGATC | 3 cut(s) | 12, 74, 640 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1007 |
| Ama87I | CYCGRG | 1 cut(s) | 316 |
| AoxI | GGCC | 3 cut(s) | 1348, 1372, 1899 |
| ApaLI | GTGCAC | 1 cut(s) | 1503 |
| Asp718I | GGTACC | 1 cut(s) | 1609 |
| AspLEI | GCGC | 1 cut(s) | 1890 |
| AspS9I | GGNCC | 3 cut(s) | 1349, 1372, 1905 |
| AsuHPI | GGTGA | 5 cut(s) | 381, 385, 411, 627, 1114 |
| AvaI | CYCGRG | 1 cut(s) | 316 |
| AvaII | GGWCC | 1 cut(s) | 1905 |
| BaeGI | GKGCMC | 2 cut(s) | 810, 1507 |
| BalI | TGGCCA | 1 cut(s) | 1901 |
| BanI | GGYRCC | 1 cut(s) | 1609 |
| BanII | GRGCYC | 1 cut(s) | 1216 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1910, 1942 |
| BbsI | GAAGAC | 2 cut(s) | 509, 1925 |
| Bbv12I | GWGCWC | 2 cut(s) | 1216, 1507 |
| BbvCI | CCTCAGC | 2 cut(s) | 469, 876 |
| BceAI | ACGGC | 1 cut(s) | 1660 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1038, 1072 |
| BciT130I | CCWGG | 1 cut(s) | 1903 |
| BclI | TGATCA | 2 cut(s) | 522, 1636 |
| BcoDI | GTCTC | 4 cut(s) | 228, 837, 1006, 1796 |
| BfaI | CTAG | 3 cut(s) | 339, 606, 1716 |
| BfmI | CTRYAG | 2 cut(s) | 1221, 1320 |
| BfrI | CTTAAG | 2 cut(s) | 451, 667 |
| Bme1390I | CCNGG | 1 cut(s) | 1903 |
| Bme18I | GGWCC | 1 cut(s) | 1905 |
| BmeT110I | CYCGRG | 1 cut(s) | 316 |
| BmgT120I | GGNCC | 3 cut(s) | 1349, 1372, 1905 |
| BmiI | GGNNCC | 3 cut(s) | 252, 768, 1611 |
| BmrFI | CCNGG | 1 cut(s) | 1903 |
| BmsI | GCATC | 3 cut(s) | 1162, 1244, 1768 |
| BpiI | GAAGAC | 2 cut(s) | 509, 1925 |
| BpmI | CTGGAG | 3 cut(s) | 429, 1464, 1664 |
| Bpu10I | CCTNAGC | 4 cut(s) | 435, 469, 651, 876 |
| BsaHI | GRCGYC | 2 cut(s) | 1015, 1740 |
| BsaJI | CCNNGG | 1 cut(s) | 246 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1428, 1458 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 711, 1082 |
| Bse3DI | GCAATG | 1 cut(s) | 1457 |
| BseBI | CCWGG | 1 cut(s) | 1903 |
| BseDI | CCNNGG | 1 cut(s) | 246 |
| BseGI | GGATG | 7 cut(s) | 26, 344, 644, 973, 1072, 1156, 1783 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 711, 1082 |
| BseMI | GCAATG | 1 cut(s) | 1457 |
| BseMII | CTCAG | 6 cut(s) | 131, 483, 867, 999, 1785, 1954 |
| BseRI | GAGGAG | 2 cut(s) | 673, 1616 |
| BseSI | GKGCMC | 2 cut(s) | 810, 1507 |
| BshFI | GGCC | 3 cut(s) | 1350, 1374, 1901 |
| BshNI | GGYRCC | 1 cut(s) | 1609 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1216, 1507 |
| BsiHKCI | CYCGRG | 1 cut(s) | 316 |
| BslFI | GGGAC | 1 cut(s) | 415 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 711, 1082 |
| BsmAI | GTCTC | 4 cut(s) | 228, 837, 1006, 1796 |
| BsmBI | CGTCTC | 2 cut(s) | 228, 1006 |
| BsmFI | GGGAC | 1 cut(s) | 415 |
| BsmI | GAATGC | 3 cut(s) | 185, 613, 1086 |
| BsnI | GGCC | 3 cut(s) | 1350, 1374, 1901 |
| BsoBI | CYCGRG | 1 cut(s) | 316 |
| Bsp1286I | GDGCHC | 3 cut(s) | 810, 1216, 1507 |
| BspACI | CCGC | 4 cut(s) | 567, 590, 712, 1352 |
| BspANI | GGCC | 3 cut(s) | 1350, 1374, 1901 |
| BspCNI | CTCAG | 6 cut(s) | 130, 482, 868, 1000, 1786, 1953 |
| BspHI | TCATGA | 1 cut(s) | 1639 |
| BspLI | GGNNCC | 3 cut(s) | 252, 768, 1611 |
| BspMAI | CTGCAG | 2 cut(s) | 1225, 1324 |
| BspPI | GGATC | 3 cut(s) | 12, 74, 640 |
| BspQI | GCTCTTC | 1 cut(s) | 1100 |
| BspT107I | GGYRCC | 1 cut(s) | 1609 |
| BspTI | CTTAAG | 2 cut(s) | 451, 667 |
| BsrDI | GCAATG | 1 cut(s) | 1457 |
| BssECI | CCNNGG | 1 cut(s) | 246 |
| BssNI | GRCGYC | 2 cut(s) | 1015, 1740 |
| BssT1I | CCWWGG | 1 cut(s) | 246 |
| Bst2UI | CCWGG | 1 cut(s) | 1903 |
| Bst4CI | ACNGT | 3 cut(s) | 243, 1097, 1416 |
| Bst6I | CTCTTC | 1 cut(s) | 1100 |
| BstACI | GRCGYC | 2 cut(s) | 1015, 1740 |
| BstAFI | CTTAAG | 2 cut(s) | 451, 667 |
| BstC8I | GCNNGC | 2 cut(s) | 675, 1352 |
| BstF5I | GGATG | 7 cut(s) | 26, 344, 644, 973, 1072, 1156, 1783 |
| BstHHI | GCGC | 1 cut(s) | 1890 |
| BstMAI | GTCTC | 4 cut(s) | 228, 837, 1006, 1796 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1220, 1229, 1347, 1787, 1826 |
| BstNI | CCWGG | 1 cut(s) | 1903 |
| BstNSI | RCATGY | 5 cut(s) | 485, 510, 701, 1524, 1573 |
| BstSCI | CCNGG | 1 cut(s) | 1901 |
| BstSFI | CTRYAG | 2 cut(s) | 1221, 1320 |
| BstSLI | GKGCMC | 2 cut(s) | 810, 1507 |
| BstV2I | GAAGAC | 2 cut(s) | 509, 1925 |
| BsuRI | GGCC | 3 cut(s) | 1350, 1374, 1901 |
| BtsCI | GGATG | 7 cut(s) | 26, 344, 644, 973, 1072, 1156, 1783 |
| BtsI | GCAGTG | 1 cut(s) | 1743 |
| BtsIMutI | CAGTG | 2 cut(s) | 557, 1743 |
| Cac8I | GCNNGC | 2 cut(s) | 675, 1352 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1007 |
| CciI | TCATGA | 1 cut(s) | 1639 |
| CfoI | GCGC | 1 cut(s) | 1890 |
| Cfr13I | GGNCC | 3 cut(s) | 1349, 1372, 1905 |
| CseI | GACGC | 2 cut(s) | 1023, 1729 |
| Csp6I | GTAC | 3 cut(s) | 587, 1392, 1610 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 228, 263 |
| CviQI | GTAC | 3 cut(s) | 587, 1392, 1610 |
| DraI | TTTAAA | 1 cut(s) | 1207 |
| EaeI | YGGCCR | 1 cut(s) | 1899 |
| Eam1104I | CTCTTC | 1 cut(s) | 1100 |
| EarI | CTCTTC | 1 cut(s) | 1100 |
| Ecl136II | GAGCTC | 1 cut(s) | 1214 |
| Eco130I | CCWWGG | 1 cut(s) | 246 |
| Eco24I | GRGCYC | 1 cut(s) | 1216 |
| Eco47I | GGWCC | 1 cut(s) | 1905 |
| Eco53kI | GAGCTC | 1 cut(s) | 1214 |
| Eco57I | CTGAAG | 1 cut(s) | 110 |
| Eco88I | CYCGRG | 1 cut(s) | 316 |
| EcoICRI | GAGCTC | 1 cut(s) | 1214 |
| EcoRII | CCWGG | 1 cut(s) | 1901 |
| EcoT14I | CCWWGG | 1 cut(s) | 246 |
| EcoT38I | GRGCYC | 1 cut(s) | 1216 |
| ErhI | CCWWGG | 1 cut(s) | 246 |
| Esp3I | CGTCTC | 2 cut(s) | 228, 1006 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 445, 477, 661, 693, 839, 871 |
| FaqI | GGGAC | 1 cut(s) | 415 |
| FauI | CCCGC | 3 cut(s) | 574, 705, 1359 |
| FauNDI | CATATG | 2 cut(s) | 1171, 1499 |
| FbaI | TGATCA | 2 cut(s) | 522, 1636 |
| FblI | GTMKAC | 1 cut(s) | 885 |
| FokI | GGATG | 7 cut(s) | 13, 331, 631, 980, 1079, 1143, 1790 |
| FriOI | GRGCYC | 1 cut(s) | 1216 |
| FspBI | CTAG | 3 cut(s) | 339, 606, 1716 |
| GlaI | GCGC | 1 cut(s) | 1889 |
| GsuI | CTGGAG | 3 cut(s) | 429, 1464, 1664 |
| HaeIII | GGCC | 3 cut(s) | 1350, 1374, 1901 |
| HgaI | GACGC | 2 cut(s) | 1023, 1729 |
| HhaI | GCGC | 1 cut(s) | 1890 |
| Hin1I | GRCGYC | 2 cut(s) | 1015, 1740 |
| Hin6I | GCGC | 1 cut(s) | 1888 |
| HinP1I | GCGC | 1 cut(s) | 1888 |
| HindIII | AAGCTT | 2 cut(s) | 675, 783 |
| HinfI | GANTC | 7 cut(s) | 416, 998, 1304, 1387, 1406, 1555, 1621 |
| HphI | GGTGA | 5 cut(s) | 381, 385, 411, 627, 1114 |
| Hpy166II | GTNNAC | 2 cut(s) | 886, 1505 |
| Hpy188I | TCNGA | 4 cut(s) | 415, 1133, 1161, 1963 |
| Hpy8I | GTNNAC | 2 cut(s) | 886, 1505 |
| Hpy99I | CGWCG | 1 cut(s) | 1529 |
| HpyAV | CCTTC | 4 cut(s) | 133, 958, 1065, 1730 |
| HpyCH4III | ACNGT | 3 cut(s) | 243, 1097, 1416 |
| HpyCH4IV | ACGT | 1 cut(s) | 356 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1220, 1229, 1347, 1787, 1826 |
| HpySE526I | ACGT | 1 cut(s) | 356 |
| Hsp92I | GRCGYC | 2 cut(s) | 1015, 1740 |
| HspAI | GCGC | 1 cut(s) | 1888 |
| KpnI | GGTACC | 1 cut(s) | 1613 |
| Ksp22I | TGATCA | 2 cut(s) | 522, 1636 |
| LguI | GCTCTTC | 1 cut(s) | 1100 |
| LmnI | GCTCC | 1 cut(s) | 1385 |
| LweI | GCATC | 3 cut(s) | 1162, 1244, 1768 |
| MaeI | CTAG | 3 cut(s) | 339, 606, 1716 |
| MaeII | ACGT | 1 cut(s) | 356 |
| MaeIII | GTNAC | 5 cut(s) | 922, 1565, 1711, 1741, 1852 |
| MhlI | GDGCHC | 3 cut(s) | 810, 1216, 1507 |
| MlsI | TGGCCA | 1 cut(s) | 1901 |
| MluCI | AATT | 3 cut(s) | 945, 986, 1822 |
| MluNI | TGGCCA | 1 cut(s) | 1901 |
| MmeI | TCCRAC | 2 cut(s) | 686, 897 |
| Mox20I | TGGCCA | 1 cut(s) | 1901 |
| MscI | TGGCCA | 1 cut(s) | 1901 |
| MseI | TTAA | 8 cut(s) | 324, 452, 668, 780, 839, 1191, 1206, 1511 |
| MslI | CAYNNNNRTG | 2 cut(s) | 480, 696 |
| Msp20I | TGGCCA | 1 cut(s) | 1901 |
| MspA1I | CMGCKG | 3 cut(s) | 107, 712, 1844 |
| MspCI | CTTAAG | 2 cut(s) | 451, 667 |
| MspR9I | CCNGG | 1 cut(s) | 1903 |
| Mva1269I | GAATGC | 3 cut(s) | 185, 613, 1086 |
| MvaI | CCWGG | 1 cut(s) | 1903 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1220, 1229, 1347, 1787, 1826 |
| NdeI | CATATG | 2 cut(s) | 1171, 1499 |
| NlaIV | GGNNCC | 3 cut(s) | 252, 768, 1611 |
| NmuCI | GTSAC | 3 cut(s) | 922, 1565, 1741 |
| NspI | RCATGY | 5 cut(s) | 485, 510, 701, 1524, 1573 |
| PagI | TCATGA | 1 cut(s) | 1639 |
| PciI | ACATGT | 3 cut(s) | 506, 697, 1569 |
| PciSI | GCTCTTC | 1 cut(s) | 1100 |
| PctI | GAATGC | 3 cut(s) | 185, 613, 1086 |
| PfeI | GAWTC | 7 cut(s) | 416, 998, 1304, 1387, 1406, 1555, 1621 |
| PscI | ACATGT | 3 cut(s) | 506, 697, 1569 |
| PsiI | TTATAA | 1 cut(s) | 950 |
| Psp124BI | GAGCTC | 1 cut(s) | 1216 |
| Psp1406I | AACGTT | 1 cut(s) | 356 |
| Psp6I | CCWGG | 1 cut(s) | 1901 |
| PspGI | CCWGG | 1 cut(s) | 1901 |
| PspN4I | GGNNCC | 3 cut(s) | 252, 768, 1611 |
| PspPI | GGNCC | 3 cut(s) | 1349, 1372, 1905 |
| PstI | CTGCAG | 2 cut(s) | 1225, 1324 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1007 |
| PvuII | CAGCTG | 2 cut(s) | 107, 1844 |
| RsaI | GTAC | 3 cut(s) | 588, 1393, 1611 |
| RsaNI | GTAC | 3 cut(s) | 587, 1392, 1610 |
| RseI | CAYNNNNRTG | 2 cut(s) | 480, 696 |
| SacI | GAGCTC | 1 cut(s) | 1216 |
| SapI | GCTCTTC | 1 cut(s) | 1100 |
| SaqAI | TTAA | 8 cut(s) | 324, 452, 668, 780, 839, 1191, 1206, 1511 |
| Sau96I | GGNCC | 3 cut(s) | 1349, 1372, 1905 |
| ScrFI | CCNGG | 1 cut(s) | 1903 |
| SduI | GDGCHC | 3 cut(s) | 810, 1216, 1507 |
| SfaNI | GCATC | 3 cut(s) | 1162, 1244, 1768 |
| SfcI | CTRYAG | 2 cut(s) | 1221, 1320 |
| SinI | GGWCC | 1 cut(s) | 1905 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 480, 696 |
| SmlI | CTYRAG | 2 cut(s) | 451, 667 |
| SmoI | CTYRAG | 2 cut(s) | 451, 667 |
| Sse9I | AATT | 3 cut(s) | 945, 986, 1822 |
| SsiI | CCGC | 4 cut(s) | 567, 590, 712, 1352 |
| SspMI | CTAG | 3 cut(s) | 339, 606, 1716 |
| SstI | GAGCTC | 1 cut(s) | 1216 |
| StyD4I | CCNGG | 1 cut(s) | 1901 |
| StyI | CCWWGG | 1 cut(s) | 246 |
| TaaI | ACNGT | 3 cut(s) | 243, 1097, 1416 |
| TaiI | ACGT | 1 cut(s) | 359 |
| TaqI | TCGA | 5 cut(s) | 214, 788, 1447, 1576, 1594 |
| TasI | AATT | 3 cut(s) | 945, 986, 1822 |
| TfiI | GAWTC | 7 cut(s) | 416, 998, 1304, 1387, 1406, 1555, 1621 |
| Tru1I | TTAA | 8 cut(s) | 324, 452, 668, 780, 839, 1191, 1206, 1511 |
| Tru9I | TTAA | 8 cut(s) | 324, 452, 668, 780, 839, 1191, 1206, 1511 |
| TscAI | CASTG | 2 cut(s) | 564, 1750 |
| TseFI | GTSAC | 3 cut(s) | 922, 1565, 1741 |
| Tsp45I | GTSAC | 3 cut(s) | 922, 1565, 1741 |
| TspDTI | ATGAA | 9 cut(s) | 39, 399, 507, 606, 615, 720, 738, 984, 1749 |
| TspGWI | ACGGA | 2 cut(s) | 210, 1372 |
| TspRI | CASTG | 2 cut(s) | 564, 1750 |
| Vha464I | CTTAAG | 2 cut(s) | 451, 667 |
| VneI | GTGCAC | 1 cut(s) | 1503 |
| VpaK11BI | GGWCC | 1 cut(s) | 1905 |
| XceI | RCATGY | 5 cut(s) | 485, 510, 701, 1524, 1573 |
| XmiI | GTMKAC | 1 cut(s) | 885 |
| XspI | CTAG | 3 cut(s) | 339, 606, 1716 |