Rroxscaffold_5G00387230

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000595
Physical Location & Seq
Reverse (-)
65938297 .. 65941463
3167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00387230.1

Sequence Viewer

Length: 1062 bp
ATGTTGGAAGTGACATTGAACTTGCAAGAAGCAATTATAAAGGCTAAAAAGAAGGATGAAAAAATCTTTGTAAAATTGAAGTTAGATTCAGTTCCTGAGAGACGCCCATTCCTTTTATCAAGGGATTTTGTCTATGCAAGACCTTCGGGTAGGGATGTTCAGCCATTTGAGGGCATTCTCTACCGTGTGGTGAAGAGCAGTCATATATTAGTTGATTTCGGACATGACTTTCTTTATCAGCATCATCCGAAACGCACATATGACGTCAGCTTCTCATTTAACAGACTTTGTTTTAAAAGAGCTCATGCTGCAGTTCAAGCTGCATCATATCCTTTGTTCCAGAACTACATCTTTCCTGATTGTGTTCCAGAAAAGATCATCATTTCCAATGATTCCACGCCAAAGGCTGCAGTTAGACAGATTTTAGGCTTTTATGGCCCGCCACCCTATCTTATAGAGGGCCAGCGCTCCGTGATTCGTACAGGAAAAACTGAATCTAAACTGTATAAACTATCAAAAACAGGAGAGGTTGTTCGAGAAGCAGCATTGCAAATCTATAAAAGCTCTCCAGATGATCGTATTCTCATATGTGCCCCATTCAACAGCACATGCGACGAGCTGATGATTAGTTTGAAGAAGGTGATCCCAGAGTGTGACATGTATCGAACCAATGCTGCATTTCGAGAGGTAGATGAGGTACCTATTGAGATTCTCCTCTCATGTGATCATGACGGTGAATGTTTTTCCTGTCCTCCCCTCGCAGAACTCCAGAGGTTCAGGCTGATCTTCTCCACATTTGTTACTAGCTTTCGGCTACACAATGAAGGCGTCACTGCTGGACATTTCAGCCATATTTTTCTGGTGGATGCTGCTTTGGCTACTGAGCCAGAGACAATGATAGCTCTAGCTAATTTTGCTAATGAGAGCACAGCTGTTATAGTAACAGGTTCAGCCAGTCATCAACCAAATCAGGTGCGCTCTGGTATGGCCAGGACCGAAGGATTGAAGACATCATACTTTAAAAGGCTCAATAAGATGAGAACAACATCAGATGACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

353

Amino Acids

39.99

Weight (kDa)

8.52

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOV-10_beta-barrel PF21634 9 - 91 4.6e-09 Helicase MOV-10, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g37100 FvH4_4g37100 FvH4_4g37100
malus_domestica MD13G1238300.v1.1 MD16G1243100.v1.1 MD16G1243200.v1.1
prunus_persica Prupe.1G070100_v2.0.a1 Prupe.1G070200_v2.0.a1 Prupe.1G070300_v2.0.a1 Prupe.1G070300_v2.0.a1
pyrus_communis pycom13g21070 pycom16g20390 pycom16g20400
rosa_chinensis RchiOBHm_Chr1g0318071 RchiOBHm_Chr1g0318111 RchiOBHm_Chr4g0446861 RchiOBHm_Chr4g0446881 RchiOBHm_Chr4g0446891
rosa_laevigata RLG00000005623 RLG00000005624 RLG00000009337 RLG00000030560 RLG00000030566
rosa_multiflora Rmu_co8177450.1_g000001 Rmu_sc0001753.1_g000012 Rmu_sc0001753.1_g000013 Rmu_sc0001753.1_g000014 Rmu_sc0001753.1_g000015 Rmu_sc0011424.1_g000009 Rmu_sc0011424.1_g000020 Rmu_sc0034555.1_g000001 Rmu_ssc0000008.1_g000002
rosa_roxburghii Rroxscaffold_4G00329530 Rroxscaffold_4G00329590 Rroxscaffold_4G00329800 Rroxscaffold_4G00329810 Rroxscaffold_4G00329860 Rroxscaffold_4G00329910 Rroxscaffold_4G00330030 Rroxscaffold_5G00343610 Rroxscaffold_5G00348280 Rroxscaffold_5G00387220 Rroxscaffold_5G00387230
rosa_rugosa Rorug01G0019100 Rorug01G0019100 Rorug01G0019500 Rorug01G0019600 Rorug04G0010100 Rorug04G0375200 Rorug04G0375300 Rorug04G0375400 Rorug04G0375500 Rorug04G0375600 Rorug04G0375700
rosa_samantha Rh1AG030700 Rh1AG030900 Rh1BG026900 Rh1CG029500 Rh1CG029700 Rh1DG040500 Rh4AG088100 Rh4AG436700 Rh4AG436800 Rh4AG436900 Rh4BG084700 Rh4BG445800 Rh4BG445900 Rh4BG446100 Rh4CG096300 Rh4CG463100 Rh4CG463200 Rh4CG463400 Rh4DG444500 Rh4DG444600 Rh4DG444700
rosa_wichuraiana Rw1G002420 Rw1G002440 Rw1G002480 Rw4G037360 Rw4G037370 Rw4G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AatII GACGTC 1 cut(s) 267
Acc65I GGTACC 1 cut(s) 697
AccB1I GGYRCC 1 cut(s) 697
AciI CCGC 1 cut(s) 440
AclWI GGATC 1 cut(s) 637
AcoI YGGCCR 1 cut(s) 987
AcyI GRCGYC 3 cut(s) 103, 264, 828
AfaI GTAC 2 cut(s) 481, 699
AfeI AGCGCT 1 cut(s) 467
AfiI CCNNNNNNNGG 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 6 cut(s) 19, 79, 317, 601, 634, 1006
AjnI CCWGG 1 cut(s) 989
AloI GAACNNNNNNTCC 2 cut(s) 516, 548
AluBI AGCT 9 cut(s) 270, 302, 320, 564, 619, 807, 902, 908, 932
AluI AGCT 9 cut(s) 270, 302, 320, 564, 619, 807, 902, 908, 932
Alw21I GWGCWC 2 cut(s) 304, 929
Alw26I GTCTC 2 cut(s) 94, 884
AlwI GGATC 1 cut(s) 637
AlwNI CAGNNNCTG 1 cut(s) 95
Aor51HI AGCGCT 1 cut(s) 467
AoxI GGCC 3 cut(s) 436, 460, 987
ApeKI GCWGC 6 cut(s) 308, 320, 407, 542, 674, 869
Asp718I GGTACC 1 cut(s) 697
AspLEI GCGC 2 cut(s) 468, 978
AspS9I GGNCC 3 cut(s) 437, 460, 993
AsuHPI GGTGA 3 cut(s) 202, 652, 746
AvaII GGWCC 1 cut(s) 993
BaeGI GKGCMC 1 cut(s) 595
BalI TGGCCA 1 cut(s) 989
BanI GGYRCC 1 cut(s) 697
BanII GRGCYC 1 cut(s) 304
BarI GAAGNNNNNNTAC 2 cut(s) 998, 1030
BbsI GAAGAC 1 cut(s) 1013
Bbv12I GWGCWC 2 cut(s) 304, 929
BbvI GCAGC 6 cut(s) 295, 307, 394, 554, 661, 856
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciT130I CCWGG 1 cut(s) 991
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 2 cut(s) 94, 884
BfaI CTAG 2 cut(s) 804, 905
BfmI CTRYAG 2 cut(s) 309, 408
BfoI RGCGCY 1 cut(s) 469
BisI GCNGC 6 cut(s) 309, 321, 408, 543, 675, 870
BlsI GCNGC 6 cut(s) 310, 322, 409, 544, 676, 871
Bme1390I CCNGG 1 cut(s) 991
Bme18I GGWCC 1 cut(s) 993
BmgT120I GGNCC 3 cut(s) 437, 460, 993
BmiI GGNNCC 1 cut(s) 699
BmrFI CCNGG 1 cut(s) 991
BmsI GCATC 3 cut(s) 250, 332, 856
BpiI GAAGAC 1 cut(s) 1013
BpmI CTGGAG 2 cut(s) 552, 752
BsaHI GRCGYC 3 cut(s) 103, 264, 828
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 954
Bse3DI GCAATG 1 cut(s) 545
BseBI CCWGG 1 cut(s) 991
BseGI GGATG 4 cut(s) 61, 160, 244, 871
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 2 cut(s) 87, 873
BseNI ACTGG 1 cut(s) 954
BseRI GAGGAG 1 cut(s) 704
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 6 cut(s) 295, 307, 394, 554, 661, 856
BshFI GGCC 3 cut(s) 438, 462, 989
BshNI GGYRCC 1 cut(s) 697
BsiHKAI GWGCWC 2 cut(s) 304, 929
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 94, 884
BsmBI CGTCTC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 174
BsnI GGCC 3 cut(s) 438, 462, 989
Bsp1286I GDGCHC 3 cut(s) 304, 595, 929
Bsp143I GATC 5 cut(s) 375, 574, 642, 724, 783
BspACI CCGC 1 cut(s) 440
BspANI GGCC 3 cut(s) 438, 462, 989
BspCNI CTCAG 2 cut(s) 88, 874
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 1 cut(s) 699
BspMAI CTGCAG 2 cut(s) 313, 412
BspPI GGATC 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 697
BsrDI GCAATG 1 cut(s) 545
BsrI ACTGG 1 cut(s) 954
BssMI GATC 5 cut(s) 375, 574, 642, 724, 783
BssNI GRCGYC 3 cut(s) 103, 264, 828
Bst2UI CCWGG 1 cut(s) 991
Bst4CI ACNGT 3 cut(s) 185, 504, 734
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 3 cut(s) 103, 264, 828
BstC8I GCNNGC 2 cut(s) 440, 464
BstDEI CTNAG 2 cut(s) 96, 882
BstF5I GGATG 4 cut(s) 61, 160, 244, 871
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 2 cut(s) 468, 978
BstKTI GATC 5 cut(s) 378, 577, 645, 727, 786
BstMAI GTCTC 2 cut(s) 94, 884
BstMBI GATC 5 cut(s) 375, 574, 642, 724, 783
BstMWI GCNNNNNNNGC 5 cut(s) 308, 317, 435, 875, 914
BstNI CCWGG 1 cut(s) 991
BstNSI RCATGY 2 cut(s) 612, 661
BstSCI CCNGG 1 cut(s) 989
BstSFI CTRYAG 2 cut(s) 309, 408
BstSLI GKGCMC 1 cut(s) 595
BstV1I GCAGC 6 cut(s) 295, 307, 394, 554, 661, 856
BstV2I GAAGAC 1 cut(s) 1013
BsuRI GGCC 3 cut(s) 438, 462, 989
BtsCI GGATG 4 cut(s) 61, 160, 244, 871
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 1 cut(s) 831
Cac8I GCNNGC 2 cut(s) 440, 464
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 727
CfoI GCGC 2 cut(s) 468, 978
Cfr13I GGNCC 3 cut(s) 437, 460, 993
CseI GACGC 2 cut(s) 111, 817
Csp6I GTAC 2 cut(s) 480, 698
CviAII CATG 6 cut(s) 224, 305, 609, 658, 720, 728
CviQI GTAC 2 cut(s) 480, 698
DdeI CTNAG 2 cut(s) 96, 882
DpnI GATC 5 cut(s) 377, 576, 644, 726, 785
DpnII GATC 5 cut(s) 375, 574, 642, 724, 783
DraI TTTAAA 2 cut(s) 295, 1021
EaeI YGGCCR 1 cut(s) 987
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 993
Eco47III AGCGCT 1 cut(s) 467
Eco53kI GAGCTC 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 989
EcoT38I GRGCYC 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 6 cut(s) 227, 308, 612, 661, 723, 731
FatI CATG 6 cut(s) 223, 304, 608, 657, 719, 727
FauI CCCGC 1 cut(s) 447
FauNDI CATATG 2 cut(s) 259, 587
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 6 cut(s) 309, 321, 408, 543, 675, 870
FokI GGATG 4 cut(s) 68, 167, 231, 878
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 6 cut(s) 309, 321, 408, 543, 675, 870
FspBI CTAG 2 cut(s) 804, 905
GlaI GCGC 2 cut(s) 467, 977
GluI GCNGC 6 cut(s) 309, 321, 408, 543, 675, 870
GsuI CTGGAG 2 cut(s) 552, 752
HaeII RGCGCY 1 cut(s) 469
HaeIII GGCC 3 cut(s) 438, 462, 989
HgaI GACGC 2 cut(s) 111, 817
HhaI GCGC 2 cut(s) 468, 978
Hin1I GRCGYC 3 cut(s) 103, 264, 828
Hin1II CATG 6 cut(s) 227, 308, 612, 661, 723, 731
Hin6I GCGC 2 cut(s) 466, 976
HinP1I GCGC 2 cut(s) 466, 976
HinfI GANTC 5 cut(s) 86, 392, 475, 494, 709
HphI GGTGA 3 cut(s) 202, 652, 746
Hpy188I TCNGA 3 cut(s) 221, 249, 1051
Hpy188III TCNNGA 9 cut(s) 95, 340, 356, 368, 536, 569, 683, 728, 769
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 5 cut(s) 46, 153, 631, 818, 992
HpyCH4III ACNGT 3 cut(s) 185, 504, 734
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 7 cut(s) 25, 137, 311, 323, 410, 550, 677
HpyF10VI GCNNNNNNNGC 5 cut(s) 308, 317, 435, 875, 914
HpyF3I CTNAG 2 cut(s) 96, 882
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 3 cut(s) 103, 264, 828
Hsp92II CATG 6 cut(s) 227, 308, 612, 661, 723, 731
HspAI GCGC 2 cut(s) 466, 976
KpnI GGTACC 1 cut(s) 701
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 5 cut(s) 375, 574, 642, 724, 783
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 473
Lsp1109I GCAGC 6 cut(s) 295, 307, 394, 554, 661, 856
LweI GCATC 3 cut(s) 250, 332, 856
MaeI CTAG 2 cut(s) 804, 905
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 5 cut(s) 10, 653, 799, 829, 940
MalI GATC 5 cut(s) 377, 576, 644, 726, 785
MboI GATC 5 cut(s) 375, 574, 642, 724, 783
MboII GAAGA 4 cut(s) 205, 646, 778, 1018
MhlI GDGCHC 3 cut(s) 304, 595, 929
MlsI TGGCCA 1 cut(s) 989
MluCI AATT 3 cut(s) 33, 74, 910
MluNI TGGCCA 1 cut(s) 989
MnlI CCTC 9 cut(s) 163, 451, 520, 679, 688, 725, 762, 765, 767
Mox20I TGGCCA 1 cut(s) 989
MscI TGGCCA 1 cut(s) 989
MseI TTAA 3 cut(s) 279, 294, 1020
MslI CAYNNNNRTG 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 989
MspA1I CMGCKG 1 cut(s) 932
MspR9I CCNGG 1 cut(s) 991
Mva1269I GAATGC 1 cut(s) 174
MvaI CCWGG 1 cut(s) 991
MwoI GCNNNNNNNGC 5 cut(s) 308, 317, 435, 875, 914
NdeI CATATG 2 cut(s) 259, 587
NdeII GATC 5 cut(s) 375, 574, 642, 724, 783
NlaIII CATG 6 cut(s) 227, 308, 612, 661, 723, 731
NlaIV GGNNCC 1 cut(s) 699
NmuCI GTSAC 3 cut(s) 10, 653, 829
NspI RCATGY 2 cut(s) 612, 661
PagI TCATGA 1 cut(s) 727
PciI ACATGT 1 cut(s) 657
PciSI GCTCTTC 1 cut(s) 188
PctI GAATGC 1 cut(s) 174
PfeI GAWTC 5 cut(s) 86, 392, 475, 494, 709
PkrI GCNGC 6 cut(s) 310, 322, 409, 544, 676, 871
PscI ACATGT 1 cut(s) 657
PsiI TTATAA 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 989
PspGI CCWGG 1 cut(s) 989
PspN4I GGNNCC 1 cut(s) 699
PspPI GGNCC 3 cut(s) 437, 460, 993
PstI CTGCAG 2 cut(s) 313, 412
PstNI CAGNNNCTG 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 932
RsaI GTAC 2 cut(s) 481, 699
RsaNI GTAC 2 cut(s) 480, 698
RseI CAYNNNNRTG 1 cut(s) 732
SacI GAGCTC 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 188
SaqAI TTAA 3 cut(s) 279, 294, 1020
SatI GCNGC 6 cut(s) 309, 321, 408, 543, 675, 870
Sau3AI GATC 5 cut(s) 375, 574, 642, 724, 783
Sau96I GGNCC 3 cut(s) 437, 460, 993
ScrFI CCNGG 1 cut(s) 991
SduI GDGCHC 3 cut(s) 304, 595, 929
SfaNI GCATC 3 cut(s) 250, 332, 856
SfcI CTRYAG 2 cut(s) 309, 408
SinI GGWCC 1 cut(s) 993
SmiMI CAYNNNNRTG 1 cut(s) 732
Sse9I AATT 3 cut(s) 33, 74, 910
SsiI CCGC 1 cut(s) 440
SspMI CTAG 2 cut(s) 804, 905
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 989
TaaI ACNGT 3 cut(s) 185, 504, 734
TaiI ACGT 1 cut(s) 267
TaqI TCGA 3 cut(s) 535, 664, 682
TaqII GACCGA 1 cut(s) 1010
TasI AATT 3 cut(s) 33, 74, 910
TfiI GAWTC 5 cut(s) 86, 392, 475, 494, 709
Tru1I TTAA 3 cut(s) 279, 294, 1020
Tru9I TTAA 3 cut(s) 279, 294, 1020
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 3 cut(s) 10, 653, 829
TseI GCWGC 6 cut(s) 308, 320, 407, 542, 674, 869
Tsp45I GTSAC 3 cut(s) 10, 653, 829
TspDTI ATGAA 2 cut(s) 72, 837
TspGWI ACGGA 1 cut(s) 460
TspRI CASTG 1 cut(s) 838
VpaK11BI GGWCC 1 cut(s) 993
XceI RCATGY 2 cut(s) 612, 661
XspI CTAG 2 cut(s) 804, 905
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.