FvH4_5g27971

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000827
Physical Location & Seq
Forward (+)
19197835 .. 19199961
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27971.t1

Sequence Viewer

Length: 1392 bp
ATGACATGTAAGCTGCTGGAAAACAACATTAAGGTGCAAGAAAAGACAAATAAGCTGCTGGAAAATTACATTGAAGTGCAAGAAAAGAATAATAAGCTGCTGGAAGAGGAAATTAAGGTCCAAAAAATGAATCATAAGCTGCTGGCAAATAAATTGGAGTTACAGGAGAAGACACTTCAGGTGCAGGAAAAGACACTTCAGGGTCAGGAAAAGTTGTTTGAGCTATTGAAGGAGACCAATCGAAATCCTTCTTTAGAGGAAAGACCAATGGCAAATAGTGGTCCTTGTAGAGAGAGGGAATATATAGATTGTGGTTTTCCAGCAAAAAAGATGCCCCAACCTGAGATCTCCGCTCAAACAAAAGCATCGGAATCCCAACTGAATGAAATGTCTGCCTCTCTTGAATTACCCACGGATGCAACAAAGTTATATTTAAAGCAGGGAAAGCTAAACGATGAGGATCATCAAGCAGAAAAGGTGATTAAAGAGAAGGTTGTACAGTCAAGTCACCTGAGTCTTGAATTGACAGCAAGTGAGCAATCTTGTCAAAGAATATCGGAGAAAGAGGAGCAACAAACGCATAAGCAACTACATTTTCAGGGTAGAAAGTCAGCTGAGTCTGATCATGGGGTGGCAATGGCACCTGAATTCCAGCAAGAGCAGCAACTTAGAGATCCAGTACATGAAAGAATAAAGGTTGATCATAAACCAGCAGAACATAGGCAATTGAGTCCACGGGACCAGAGGCACTCTGGATCTGAAATGTCCCTCACTACATCTATGGTTGAATCATCACCAAGAAAGAATGATCAGAATACTAAAATGCAGATAGAGGAAAAGACTCGAGAGCTGAAGACATCAACAGAGGAAACAGGTCAAAGACAGTTGCAGCAGAGGCAGCTTCAACCAAGAACCAAAAACCTATCTGAGTCCAAGCGTTCAATGCTTTCGAACACTGGAATGCCACAACTGGAAAAGTCAGGAGTCGAAGTATCATCTCAACTGAAAAAGCAGTCTCAAGTGGAAAAGCCTGGAGTTGGAGATTCATCTCAACCGAAGCAGAAACAAGTTGACTGCTCAAATAAGCTCACGCAGAAACAGCAGATGCCTTGGGATATGAAACTACGCTCACGCAACCAAGCTACATCACAATGTGAACCTGACGTTATGATGATTGAATCGCCGTCCTCAAAGCACCCTTGTGAGCAGCCACAAGAACAGAAGCATCCTAAGCAGCCACATAAGCAAAAAGGGAGACCACCTAAATCAAAACTGGATAGAGCTGCTCCTACTAAGCGTCAAAAGCTGCAGGAACAACTAGAAAGAGAGAGGCCCCCCAAGTTGGATGAAAATACTATATCAGGGAGAGAATTGATATCAAAGAACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

464

Amino Acids

53.4

Weight (kDa)

9.01

Isoelectric Point (pI)

69.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 640
AccBSI CCGCTC 1 cut(s) 353
AciI CCGC 1 cut(s) 351
AclWI GGATC 3 cut(s) 468, 668, 763
AcsI RAATTY 1 cut(s) 647
AcuI CTGAAG 3 cut(s) 161, 182, 872
AdeI CACNNNGTG 1 cut(s) 1154
AfaI GTAC 2 cut(s) 498, 681
AfiI CCNNNNNNNGG 2 cut(s) 1037, 1342
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 8 cut(s) 74, 229, 404, 521, 788, 905, 942, 1178
AjnI CCWGG 1 cut(s) 1030
AleI CACNNNNGTG 1 cut(s) 1200
Alw26I GTCTC 3 cut(s) 227, 1020, 1249
AlwI GGATC 3 cut(s) 468, 668, 763
Ama87I CYCGRG 1 cut(s) 843
AoxI GGCC 1 cut(s) 1331
ApoI RAATTY 1 cut(s) 647
Asp700I GAANNNNTTC 1 cut(s) 247
AspS9I GGNCC 4 cut(s) 118, 281, 739, 1332
AsuHPI GGTGA 3 cut(s) 490, 500, 786
AsuII TTCGAA 1 cut(s) 950
AvaI CYCGRG 1 cut(s) 843
AvaII GGWCC 3 cut(s) 118, 281, 739
BanI GGYRCC 1 cut(s) 640
BbsI GAAGAC 2 cut(s) 176, 860
BceAI ACGGC 1 cut(s) 1168
BciT130I CCWGG 1 cut(s) 1032
BclI TGATCA 3 cut(s) 622, 700, 808
BcoDI GTCTC 3 cut(s) 227, 1020, 1249
BfaI CTAG 1 cut(s) 1319
BfmI CTRYAG 1 cut(s) 1307
BglII AGATCT 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 1032
Bme18I GGWCC 3 cut(s) 118, 281, 739
BmeT110I CYCGRG 1 cut(s) 843
BmgT120I GGNCC 4 cut(s) 118, 281, 739, 1332
BmiI GGNNCC 3 cut(s) 642, 740, 1334
BmrFI CCNGG 1 cut(s) 1032
BmsI GCATC 5 cut(s) 321, 374, 406, 1095, 1234
BpiI GAAGAC 2 cut(s) 176, 860
BpmI CTGGAG 1 cut(s) 1053
Bpu10I CCTNAGC 1 cut(s) 1230
Bpu14I TTCGAA 1 cut(s) 950
BpuEI CTTGAG 1 cut(s) 1002
BsaBI GATNNNNATC 1 cut(s) 459
BsaI GGTCTC 2 cut(s) 227, 1249
BsaJI CCNNGG 3 cut(s) 411, 734, 1109
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bsc4I CCNNNNNNNGG 2 cut(s) 1037, 1342
Bse1I ACTGG 4 cut(s) 677, 961, 975, 1278
Bse3DI GCAATG 1 cut(s) 642
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 1032
BseDI CCNNGG 3 cut(s) 411, 734, 1109
BseGI GGATG 3 cut(s) 421, 1225, 1351
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 1037, 1342
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 4 cut(s) 333, 503, 606, 918
BseNI ACTGG 4 cut(s) 677, 961, 975, 1278
BseRI GAGGAG 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 203
BshFI GGCC 1 cut(s) 1333
BshNI GGYRCC 1 cut(s) 640
BsiHKCI CYCGRG 1 cut(s) 843
BslFI GGGAC 2 cut(s) 751, 752
BslI CCNNNNNNNGG 2 cut(s) 1037, 1342
BsmAI GTCTC 3 cut(s) 227, 1020, 1249
BsmFI GGGAC 2 cut(s) 751, 752
BsmI GAATGC 1 cut(s) 966
BsnI GGCC 1 cut(s) 1333
Bso31I GGTCTC 2 cut(s) 227, 1249
BsoBI CYCGRG 1 cut(s) 843
Bsp119I TTCGAA 1 cut(s) 950
Bsp1407I TGTACA 1 cut(s) 496
Bsp143I GATC 7 cut(s) 345, 460, 622, 673, 700, 755, 808
BspACI CCGC 1 cut(s) 351
BspANI GGCC 1 cut(s) 1333
BspCNI CTCAG 4 cut(s) 334, 504, 607, 919
BspLI GGNNCC 3 cut(s) 642, 740, 1334
BspMAI CTGCAG 1 cut(s) 1311
BspPI GGATC 3 cut(s) 468, 668, 763
BspT104I TTCGAA 1 cut(s) 950
BspT107I GGYRCC 1 cut(s) 640
BspTNI GGTCTC 2 cut(s) 227, 1249
BsrBI CCGCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 642
BsrGI TGTACA 1 cut(s) 496
BsrI ACTGG 4 cut(s) 677, 961, 975, 1278
BssECI CCNNGG 3 cut(s) 411, 734, 1109
BssMI GATC 7 cut(s) 345, 460, 622, 673, 700, 755, 808
BssT1I CCWWGG 1 cut(s) 1109
Bst2UI CCWGG 1 cut(s) 1032
Bst4CI ACNGT 2 cut(s) 501, 885
Bst6I CTCTTC 1 cut(s) 99
BstAUI TGTACA 1 cut(s) 496
BstBI TTCGAA 1 cut(s) 950
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 7 cut(s) 342, 512, 615, 668, 927, 1230, 1293
BstDSI CCRYGG 2 cut(s) 411, 734
BstF5I GGATG 3 cut(s) 421, 1225, 1351
BstKTI GATC 7 cut(s) 348, 463, 625, 676, 703, 758, 811
BstMAI GTCTC 3 cut(s) 227, 1020, 1249
BstMBI GATC 7 cut(s) 345, 460, 622, 673, 700, 755, 808
BstNI CCWGG 1 cut(s) 1032
BstNSI RCATGY 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 1030
BstSFI CTRYAG 1 cut(s) 1307
BstV2I GAAGAC 2 cut(s) 176, 860
BstX2I RGATCY 3 cut(s) 345, 673, 755
BstYI RGATCY 3 cut(s) 345, 673, 755
BsuRI GGCC 1 cut(s) 1333
BtgI CCRYGG 2 cut(s) 411, 734
BtsCI GGATG 3 cut(s) 421, 1225, 1351
BtsIMutI CAGTG 1 cut(s) 954
Cac8I GCNNGC 1 cut(s) 144
Cfr13I GGNCC 4 cut(s) 118, 281, 739, 1332
CseI GACGC 1 cut(s) 1286
Csp6I GTAC 2 cut(s) 497, 680
CviAII CATG 3 cut(s) 6, 626, 683
CviQI GTAC 2 cut(s) 497, 680
DdeI CTNAG 7 cut(s) 342, 512, 615, 668, 927, 1230, 1293
DpnI GATC 7 cut(s) 347, 462, 624, 675, 702, 757, 810
DpnII GATC 7 cut(s) 345, 460, 622, 673, 700, 755, 808
DraI TTTAAA 1 cut(s) 435
DraIII CACNNNGTG 1 cut(s) 1154
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 1109
Eco31I GGTCTC 2 cut(s) 227, 1249
Eco32I GATATC 1 cut(s) 1377
Eco47I GGWCC 3 cut(s) 118, 281, 739
Eco57I CTGAAG 3 cut(s) 161, 182, 872
Eco88I CYCGRG 1 cut(s) 843
EcoO109I RGGNCCY 1 cut(s) 1332
EcoRI GAATTC 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 1030
EcoRV GATATC 1 cut(s) 1377
EcoT14I CCWWGG 1 cut(s) 1109
ErhI CCWWGG 1 cut(s) 1109
FaeI CATG 3 cut(s) 9, 629, 686
FaqI GGGAC 2 cut(s) 751, 752
FatI CATG 3 cut(s) 5, 625, 682
FbaI TGATCA 3 cut(s) 622, 700, 808
FokI GGATG 3 cut(s) 428, 1212, 1358
FspBI CTAG 1 cut(s) 1319
GsuI CTGGAG 1 cut(s) 1053
HaeIII GGCC 1 cut(s) 1333
HgaI GACGC 1 cut(s) 1286
Hin1II CATG 3 cut(s) 9, 629, 686
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HphI GGTGA 3 cut(s) 490, 500, 786
Hpy166II GTNNAC 3 cut(s) 734, 1072, 1157
Hpy188I TCNGA 6 cut(s) 370, 559, 622, 760, 813, 928
Hpy188III TCNNGA 6 cut(s) 206, 401, 518, 753, 845, 981
Hpy8I GTNNAC 3 cut(s) 734, 1072, 1157
HpyAV CCTTC 3 cut(s) 223, 258, 484
HpyCH4III ACNGT 2 cut(s) 501, 885
HpyCH4IV ACGT 1 cut(s) 1164
HpyCH4V TGCA 7 cut(s) 37, 79, 184, 419, 826, 889, 1309
HpyF3I CTNAG 7 cut(s) 342, 512, 615, 668, 927, 1230, 1293
HpySE526I ACGT 1 cut(s) 1164
Hsp92II CATG 3 cut(s) 9, 629, 686
Ksp22I TGATCA 3 cut(s) 622, 700, 808
Kzo9I GATC 7 cut(s) 345, 460, 622, 673, 700, 755, 808
LmnI GCTCC 2 cut(s) 568, 1291
LweI GCATC 5 cut(s) 321, 374, 406, 1095, 1234
MaeI CTAG 1 cut(s) 1319
MaeII ACGT 1 cut(s) 1164
MaeIII GTNAC 2 cut(s) 159, 506
MalI GATC 7 cut(s) 347, 462, 624, 675, 702, 757, 810
MbiI CCGCTC 1 cut(s) 353
MboI GATC 7 cut(s) 345, 460, 622, 673, 700, 755, 808
MboII GAAGA 3 cut(s) 116, 181, 865
MfeI CAATTG 1 cut(s) 725
MflI RGATCY 3 cut(s) 345, 673, 755
MluCI AATT 8 cut(s) 64, 111, 152, 404, 521, 647, 725, 1370
MlyI GAGTC 6 cut(s) 523, 626, 739, 835, 938, 993
MmeI TCCRAC 2 cut(s) 1018, 1323
MroXI GAANNNNTTC 1 cut(s) 247
MseI TTAA 4 cut(s) 30, 114, 434, 483
MslI CAYNNNNRTG 5 cut(s) 32, 74, 959, 1150, 1200
MspA1I CMGCKG 1 cut(s) 614
MspR9I CCNGG 1 cut(s) 1032
MunI CAATTG 1 cut(s) 725
Mva1269I GAATGC 1 cut(s) 966
MvaI CCWGG 1 cut(s) 1032
NdeII GATC 7 cut(s) 345, 460, 622, 673, 700, 755, 808
NlaIII CATG 3 cut(s) 9, 629, 686
NlaIV GGNNCC 3 cut(s) 642, 740, 1334
NmuCI GTSAC 1 cut(s) 506
NspI RCATGY 1 cut(s) 9
NspV TTCGAA 1 cut(s) 950
OliI CACNNNNGTG 1 cut(s) 1200
PaeR7I CTCGAG 1 cut(s) 843
PciI ACATGT 1 cut(s) 5
PctI GAATGC 1 cut(s) 966
PdmI GAANNNNTTC 1 cut(s) 247
PfeI GAWTC 5 cut(s) 130, 371, 788, 1043, 1178
PleI GAGTC 6 cut(s) 522, 625, 738, 835, 937, 992
PpsI GAGTC 6 cut(s) 522, 625, 738, 835, 937, 992
PscI ACATGT 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 1030
PspGI CCWGG 1 cut(s) 1030
PspN4I GGNNCC 3 cut(s) 642, 740, 1334
PspPI GGNCC 4 cut(s) 118, 281, 739, 1332
PstI CTGCAG 1 cut(s) 1311
PsuI RGATCY 3 cut(s) 345, 673, 755
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 2 cut(s) 498, 681
RsaNI GTAC 2 cut(s) 497, 680
RseI CAYNNNNRTG 5 cut(s) 32, 74, 959, 1150, 1200
SaqAI TTAA 4 cut(s) 30, 114, 434, 483
Sau3AI GATC 7 cut(s) 345, 460, 622, 673, 700, 755, 808
Sau96I GGNCC 4 cut(s) 118, 281, 739, 1332
SchI GAGTC 6 cut(s) 523, 626, 739, 835, 938, 993
ScrFI CCNGG 1 cut(s) 1032
SfaNI GCATC 5 cut(s) 321, 374, 406, 1095, 1234
SfcI CTRYAG 1 cut(s) 1307
Sfr274I CTCGAG 1 cut(s) 843
SfuI TTCGAA 1 cut(s) 950
SinI GGWCC 3 cut(s) 118, 281, 739
SlaI CTCGAG 1 cut(s) 843
SmiMI CAYNNNNRTG 5 cut(s) 32, 74, 959, 1150, 1200
SmlI CTYRAG 2 cut(s) 843, 1017
SmoI CTYRAG 2 cut(s) 843, 1017
Sse9I AATT 8 cut(s) 64, 111, 152, 404, 521, 647, 725, 1370
SsiI CCGC 1 cut(s) 351
SspMI CTAG 1 cut(s) 1319
StyD4I CCNGG 1 cut(s) 1030
StyI CCWWGG 1 cut(s) 1109
TaaI ACNGT 2 cut(s) 501, 885
TaiI ACGT 1 cut(s) 1167
TaqI TCGA 4 cut(s) 241, 844, 950, 987
TasI AATT 8 cut(s) 64, 111, 152, 404, 521, 647, 725, 1370
TatI WGTACW 2 cut(s) 496, 679
TfiI GAWTC 5 cut(s) 130, 371, 788, 1043, 1178
Tru1I TTAA 4 cut(s) 30, 114, 434, 483
Tru9I TTAA 4 cut(s) 30, 114, 434, 483
TscAI CASTG 1 cut(s) 961
TseFI GTSAC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 6 cut(s) 143, 399, 699, 1035, 1133, 1362
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 961
VpaK11BI GGWCC 3 cut(s) 118, 281, 739
XapI RAATTY 1 cut(s) 647
XceI RCATGY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XhoI CTCGAG 1 cut(s) 843
XmnI GAANNNNTTC 1 cut(s) 247
XspI CTAG 1 cut(s) 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.