Domain in histone families 1 and 5
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Linker_histone | PF00538 | 76 - 137 | 2.4e-10 | linker histone H1 and H5 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 3 cut(s) | 666, 3939, 6015 |
| AatII | GACGTC | 1 cut(s) | 190 |
| AbsI | CCTCGAGG | 1 cut(s) | 3381 |
| Acc16I | TGCGCA | 2 cut(s) | 1215, 5738 |
| Acc36I | ACCTGC | 3 cut(s) | 214, 7664, 8491 |
| AccB1I | GGYRCC | 3 cut(s) | 3424, 3519, 6619 |
| AccI | GTMKAC | 2 cut(s) | 196, 4030 |
| AccIII | TCCGGA | 1 cut(s) | 5087 |
| AclI | AACGTT | 1 cut(s) | 2088 |
| AcoI | YGGCCR | 1 cut(s) | 4439 |
| AcyI | GRCGYC | 3 cut(s) | 187, 3035, 8791 |
| AdeI | CACNNNGTG | 1 cut(s) | 1735 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 3815, 4549, 5094, 6005, 7445, 8668 |
| AflIII | ACRYGT | 5 cut(s) | 1354, 1523, 4828, 5318, 5714 |
| AgeI | ACCGGT | 2 cut(s) | 4900, 7963 |
| AjnI | CCWGG | 8 cut(s) | 1048, 2873, 3435, 3757, 3808, 4615, 7443, 8183 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 5502, 5534, 6225, 6257, 7171, 7203 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5808, 5840 |
| Alw21I | GWGCWC | 4 cut(s) | 3878, 4134, 4401, 8193 |
| Alw26I | GTCTC | 7 cut(s) | 66, 3552, 3780, 3925, 5102, 6435, 7740 |
| Alw44I | GTGCAC | 1 cut(s) | 3874 |
| AlwNI | CAGNNNCTG | 8 cut(s) | 2116, 3764, 4195, 4198, 4312, 6997, 8389, 8557 |
| Ama87I | CYCGRG | 2 cut(s) | 3381, 7623 |
| Aor13HI | TCCGGA | 1 cut(s) | 5087 |
| ApaLI | GTGCAC | 1 cut(s) | 3874 |
| AsiGI | ACCGGT | 2 cut(s) | 4900, 7963 |
| AspLEI | GCGC | 4 cut(s) | 1216, 1749, 4218, 5739 |
| AsuC2I | CCSGG | 2 cut(s) | 3183, 7752 |
| AsuII | TTCGAA | 2 cut(s) | 2248, 3682 |
| AsuNHI | GCTAGC | 1 cut(s) | 2398 |
| AvaI | CYCGRG | 2 cut(s) | 3381, 7623 |
| AvaII | GGWCC | 8 cut(s) | 1889, 2609, 2787, 3983, 7458, 7853, 7934, 7948 |
| AxyI | CCTNAGG | 1 cut(s) | 2484 |
| BaeGI | GKGCMC | 3 cut(s) | 472, 3515, 3878 |
| BalI | TGGCCA | 1 cut(s) | 4441 |
| BamHI | GGATCC | 3 cut(s) | 2378, 4102, 7519 |
| BanI | GGYRCC | 3 cut(s) | 3424, 3519, 6619 |
| BanII | GRGCYC | 2 cut(s) | 3888, 3957 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 981, 1013, 1086, 1118 |
| BauI | CACGAG | 1 cut(s) | 4219 |
| Bbv12I | GWGCWC | 4 cut(s) | 3878, 4134, 4401, 8193 |
| BbvCI | CCTCAGC | 1 cut(s) | 7250 |
| BceAI | ACGGC | 4 cut(s) | 224, 2704, 3438, 6950 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3855, 3889 |
| BciT130I | CCWGG | 8 cut(s) | 1050, 2875, 3437, 3759, 3810, 4617, 7445, 8185 |
| BciVI | GTATCC | 3 cut(s) | 2881, 3586, 5473 |
| BclI | TGATCA | 3 cut(s) | 3481, 4641, 4936 |
| BcnI | CCSGG | 2 cut(s) | 3183, 7752 |
| BcoDI | GTCTC | 7 cut(s) | 66, 3552, 3780, 3925, 5102, 6435, 7740 |
| BfuAI | ACCTGC | 3 cut(s) | 214, 7664, 8491 |
| BfuI | GTATCC | 3 cut(s) | 2881, 3586, 5473 |
| BglII | AGATCT | 4 cut(s) | 2352, 7619, 7664, 8065 |
| BmcAI | AGTACT | 1 cut(s) | 7726 |
| Bme18I | GGWCC | 8 cut(s) | 1889, 2609, 2787, 3983, 7458, 7853, 7934, 7948 |
| BmeT110I | CYCGRG | 2 cut(s) | 3381, 7623 |
| BmtI | GCTAGC | 1 cut(s) | 2402 |
| Bpu10I | CCTNAGC | 5 cut(s) | 2934, 3147, 7250, 8568, 8700 |
| Bpu14I | TTCGAA | 2 cut(s) | 2248, 3682 |
| BpuEI | CTTGAG | 6 cut(s) | 379, 3780, 4677, 4725, 7722, 8674 |
| BpuMI | CCSGG | 2 cut(s) | 3183, 7752 |
| Bsa29I | ATCGAT | 2 cut(s) | 8165, 8492 |
| BsaAI | YACGTR | 1 cut(s) | 1526 |
| BsaBI | GATNNNNATC | 4 cut(s) | 25, 4959, 5919, 6501 |
| BsaHI | GRCGYC | 3 cut(s) | 187, 3035, 8791 |
| BsaI | GGTCTC | 3 cut(s) | 66, 6435, 7740 |
| BsaWI | WCCGGW | 5 cut(s) | 160, 4900, 5087, 5998, 7963 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 3815, 4549, 5094, 6005, 7445, 8668 |
| Bse118I | RCCGGY | 2 cut(s) | 4900, 7963 |
| Bse21I | CCTNAGG | 1 cut(s) | 2484 |
| Bse3DI | GCAATG | 7 cut(s) | 2283, 4235, 4812, 4895, 5048, 8177, 8366 |
| Bse8I | GATNNNNATC | 4 cut(s) | 25, 4959, 5919, 6501 |
| BseAI | TCCGGA | 1 cut(s) | 5087 |
| BseBI | CCWGG | 8 cut(s) | 1050, 2875, 3437, 3759, 3810, 4617, 7445, 8185 |
| BseCI | ATCGAT | 2 cut(s) | 8165, 8492 |
| BseJI | GATNNNNATC | 4 cut(s) | 25, 4959, 5919, 6501 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 3815, 4549, 5094, 6005, 7445, 8668 |
| BseMI | GCAATG | 7 cut(s) | 2283, 4235, 4812, 4895, 5048, 8177, 8366 |
| BseRI | GAGGAG | 3 cut(s) | 75, 278, 6969 |
| BseSI | GKGCMC | 3 cut(s) | 472, 3515, 3878 |
| BseYI | CCCAGC | 7 cut(s) | 32, 2382, 2790, 4086, 4487, 6830, 7524 |
| BsgI | GTGCAG | 8 cut(s) | 1389, 1545, 2117, 2159, 2201, 4184, 4243, 7109 |
| BshNI | GGYRCC | 3 cut(s) | 3424, 3519, 6619 |
| BshTI | ACCGGT | 2 cut(s) | 4900, 7963 |
| BshVI | ATCGAT | 2 cut(s) | 8165, 8492 |
| BsiHKAI | GWGCWC | 4 cut(s) | 3878, 4134, 4401, 8193 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3381, 7623 |
| BsiSI | CCGG | 9 cut(s) | 161, 3182, 4901, 5088, 5228, 5999, 7226, 7751, 7964 |
| BslFI | GGGAC | 5 cut(s) | 851, 2723, 2800, 4164, 4281 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 3815, 4549, 5094, 6005, 7445, 8668 |
| BsmAI | GTCTC | 7 cut(s) | 66, 3552, 3780, 3925, 5102, 6435, 7740 |
| BsmBI | CGTCTC | 3 cut(s) | 3552, 3780, 3925 |
| BsmFI | GGGAC | 5 cut(s) | 851, 2723, 2800, 4164, 4281 |
| BsmI | GAATGC | 1 cut(s) | 3437 |
| Bso31I | GGTCTC | 3 cut(s) | 66, 6435, 7740 |
| BsoBI | CYCGRG | 2 cut(s) | 3381, 7623 |
| Bsp119I | TTCGAA | 2 cut(s) | 2248, 3682 |
| Bsp1286I | GDGCHC | 8 cut(s) | 472, 3515, 3878, 3888, 3957, 4134, 4401, 8193 |
| Bsp13I | TCCGGA | 1 cut(s) | 5087 |
| Bsp1407I | TGTACA | 2 cut(s) | 997, 3280 |
| Bsp19I | CCATGG | 3 cut(s) | 2418, 6445, 7265 |
| BspDI | ATCGAT | 2 cut(s) | 8165, 8492 |
| BspEI | TCCGGA | 1 cut(s) | 5087 |
| BspHI | TCATGA | 3 cut(s) | 2650, 2824, 6394 |
| BspMAI | CTGCAG | 8 cut(s) | 1489, 4147, 4515, 5680, 6958, 7605, 8394, 8553 |
| BspMI | ACCTGC | 3 cut(s) | 214, 7664, 8491 |
| BspOI | GCTAGC | 1 cut(s) | 2402 |
| BspQI | GCTCTTC | 4 cut(s) | 1314, 1587, 5466, 5562 |
| BspT104I | TTCGAA | 2 cut(s) | 2248, 3682 |
| BspT107I | GGYRCC | 3 cut(s) | 3424, 3519, 6619 |
| BspTNI | GGTCTC | 3 cut(s) | 66, 6435, 7740 |
| BsrDI | GCAATG | 7 cut(s) | 2283, 4235, 4812, 4895, 5048, 8177, 8366 |
| BsrFI | RCCGGY | 2 cut(s) | 4900, 7963 |
| BsrGI | TGTACA | 2 cut(s) | 997, 3280 |
| BssAI | RCCGGY | 2 cut(s) | 4900, 7963 |
| BssNI | GRCGYC | 3 cut(s) | 187, 3035, 8791 |
| BssSI | CACGAG | 1 cut(s) | 4219 |
| BssT1I | CCWWGG | 4 cut(s) | 2418, 2464, 6445, 7265 |
| Bst2BI | CACGAG | 1 cut(s) | 4219 |
| Bst2UI | CCWGG | 8 cut(s) | 1050, 2875, 3437, 3759, 3810, 4617, 7445, 8185 |
| Bst6I | CTCTTC | 7 cut(s) | 1314, 1587, 2583, 5100, 5466, 5484, 5562 |
| BstACI | GRCGYC | 3 cut(s) | 187, 3035, 8791 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 2116, 3059, 4198, 4811, 6997 |
| BstAUI | TGTACA | 2 cut(s) | 997, 3280 |
| BstBAI | YACGTR | 1 cut(s) | 1526 |
| BstBI | TTCGAA | 2 cut(s) | 2248, 3682 |
| BstC8I | GCNNGC | 5 cut(s) | 105, 2400, 4392, 8373, 8801 |
| BstDSI | CCRYGG | 4 cut(s) | 2418, 3515, 6445, 7265 |
| BstEII | GGTNACC | 1 cut(s) | 6400 |
| BstHHI | GCGC | 4 cut(s) | 1216, 1749, 4218, 5739 |
| BstMAI | GTCTC | 7 cut(s) | 66, 3552, 3780, 3925, 5102, 6435, 7740 |
| BstNI | CCWGG | 8 cut(s) | 1050, 2875, 3437, 3759, 3810, 4617, 7445, 8185 |
| BstNSI | RCATGY | 5 cut(s) | 1358, 4832, 5322, 5718, 7923 |
| BstPI | GGTNACC | 1 cut(s) | 6400 |
| BstSLI | GKGCMC | 3 cut(s) | 472, 3515, 3878 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 5402 |
| Bsu15I | ATCGAT | 2 cut(s) | 8165, 8492 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2484 |
| BsuI | GTATCC | 3 cut(s) | 2881, 3586, 5473 |
| BsuTUI | ATCGAT | 2 cut(s) | 8165, 8492 |
| BtgI | CCRYGG | 4 cut(s) | 2418, 3515, 6445, 7265 |
| BtgZI | GCGATG | 1 cut(s) | 4335 |
| BtsI | GCAGTG | 2 cut(s) | 1494, 4152 |
| BtsIMutI | CAGTG | 8 cut(s) | 1178, 1494, 2850, 4134, 4152, 7536, 8064, 8757 |
| BveI | ACCTGC | 3 cut(s) | 214, 7664, 8491 |
| Cac8I | GCNNGC | 5 cut(s) | 105, 2400, 4392, 8373, 8801 |
| CaiI | CAGNNNCTG | 8 cut(s) | 2116, 3764, 4195, 4198, 4312, 6997, 8389, 8557 |
| CciI | TCATGA | 3 cut(s) | 2650, 2824, 6394 |
| CfoI | GCGC | 4 cut(s) | 1216, 1749, 4218, 5739 |
| Cfr10I | RCCGGY | 2 cut(s) | 4900, 7963 |
| ClaI | ATCGAT | 2 cut(s) | 8165, 8492 |
| CseI | GACGC | 5 cut(s) | 2432, 3043, 4490, 7066, 8780 |
| CspAI | ACCGGT | 2 cut(s) | 4900, 7963 |
| DraI | TTTAAA | 2 cut(s) | 2442, 8514 |
| DraIII | CACNNNGTG | 1 cut(s) | 1735 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 666, 3939, 6015 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 666, 3939, 6015 |
| EaeI | YGGCCR | 1 cut(s) | 4439 |
| Eam1104I | CTCTTC | 7 cut(s) | 1314, 1587, 2583, 5100, 5466, 5484, 5562 |
| EarI | CTCTTC | 7 cut(s) | 1314, 1587, 2583, 5100, 5466, 5484, 5562 |
| Eco130I | CCWWGG | 4 cut(s) | 2418, 2464, 6445, 7265 |
| Eco147I | AGGCCT | 5 cut(s) | 8229, 8239, 8323, 8425, 8596 |
| Eco24I | GRGCYC | 2 cut(s) | 3888, 3957 |
| Eco31I | GGTCTC | 3 cut(s) | 66, 6435, 7740 |
| Eco32I | GATATC | 4 cut(s) | 178, 3455, 6503, 6571 |
| Eco47I | GGWCC | 8 cut(s) | 1889, 2609, 2787, 3983, 7458, 7853, 7934, 7948 |
| Eco81I | CCTNAGG | 1 cut(s) | 2484 |
| Eco88I | CYCGRG | 2 cut(s) | 3381, 7623 |
| Eco91I | GGTNACC | 1 cut(s) | 6400 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2787, 4539, 8736 |
| EcoO65I | GGTNACC | 1 cut(s) | 6400 |
| EcoRI | GAATTC | 2 cut(s) | 2625, 3707 |
| EcoRII | CCWGG | 8 cut(s) | 1048, 2873, 3435, 3757, 3808, 4615, 7443, 8183 |
| EcoRV | GATATC | 4 cut(s) | 178, 3455, 6503, 6571 |
| EcoT14I | CCWWGG | 4 cut(s) | 2418, 2464, 6445, 7265 |
| EcoT22I | ATGCAT | 1 cut(s) | 429 |
| EcoT38I | GRGCYC | 2 cut(s) | 3888, 3957 |
| ErhI | CCWWGG | 4 cut(s) | 2418, 2464, 6445, 7265 |
| Esp3I | CGTCTC | 3 cut(s) | 3552, 3780, 3925 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2940, 2972, 3000, 3032 |
| FaqI | GGGAC | 5 cut(s) | 851, 2723, 2800, 4164, 4281 |
| FauI | CCCGC | 3 cut(s) | 2559, 4399, 7806 |
| FauNDI | CATATG | 4 cut(s) | 1254, 4206, 4320, 8112 |
| FbaI | TGATCA | 3 cut(s) | 3481, 4641, 4936 |
| FblI | GTMKAC | 2 cut(s) | 196, 4030 |
| FriOI | GRGCYC | 2 cut(s) | 3888, 3957 |
| FspI | TGCGCA | 2 cut(s) | 1215, 5738 |
| GlaI | GCGC | 4 cut(s) | 1215, 1748, 4217, 5738 |
| GsaI | CCCAGC | 7 cut(s) | 36, 2386, 2794, 4090, 4491, 6834, 7528 |
| HapII | CCGG | 9 cut(s) | 161, 3182, 4901, 5088, 5228, 5999, 7226, 7751, 7964 |
| HgaI | GACGC | 5 cut(s) | 2432, 3043, 4490, 7066, 8780 |
| HhaI | GCGC | 4 cut(s) | 1216, 1749, 4218, 5739 |
| Hin1I | GRCGYC | 3 cut(s) | 187, 3035, 8791 |
| Hin6I | GCGC | 4 cut(s) | 1214, 1747, 4216, 5737 |
| HinP1I | GCGC | 4 cut(s) | 1214, 1747, 4216, 5737 |
| HincII | GTYRAC | 7 cut(s) | 288, 625, 3850, 4031, 4505, 7994, 8247 |
| HindII | GTYRAC | 7 cut(s) | 288, 625, 3850, 4031, 4505, 7994, 8247 |
| HindIII | AAGCTT | 2 cut(s) | 101, 3476 |
| HpaI | GTTAAC | 1 cut(s) | 3850 |
| HpaII | CCGG | 9 cut(s) | 161, 3182, 4901, 5088, 5228, 5999, 7226, 7751, 7964 |
| Hpy99I | CGWCG | 3 cut(s) | 189, 4035, 8730 |
| HpyCH4IV | ACGT | 7 cut(s) | 187, 1525, 2088, 3376, 4385, 7261, 8122 |
| HpySE526I | ACGT | 7 cut(s) | 187, 1525, 2088, 3376, 4385, 7261, 8122 |
| Hsp92I | GRCGYC | 3 cut(s) | 187, 3035, 8791 |
| HspAI | GCGC | 4 cut(s) | 1214, 1747, 4216, 5737 |
| KflI | GGGWCCC | 1 cut(s) | 2787 |
| Kpn2I | TCCGGA | 1 cut(s) | 5087 |
| Ksp22I | TGATCA | 3 cut(s) | 3481, 4641, 4936 |
| KspAI | GTTAAC | 1 cut(s) | 3850 |
| LguI | GCTCTTC | 4 cut(s) | 1314, 1587, 5466, 5562 |
| MaeII | ACGT | 7 cut(s) | 187, 1525, 2088, 3376, 4385, 7261, 8122 |
| MfeI | CAATTG | 7 cut(s) | 258, 696, 1676, 1802, 3338, 3506, 7179 |
| MhlI | GDGCHC | 8 cut(s) | 472, 3515, 3878, 3888, 3957, 4134, 4401, 8193 |
| MlsI | TGGCCA | 1 cut(s) | 4441 |
| MluNI | TGGCCA | 1 cut(s) | 4441 |
| MmeI | TCCRAC | 6 cut(s) | 455, 3796, 4530, 5500, 7083, 8415 |
| Mox20I | TGGCCA | 1 cut(s) | 4441 |
| Mph1103I | ATGCAT | 1 cut(s) | 429 |
| MroI | TCCGGA | 1 cut(s) | 5087 |
| MscI | TGGCCA | 1 cut(s) | 4441 |
| MslI | CAYNNNNRTG | 8 cut(s) | 1391, 2135, 2177, 3430, 3893, 8196, 8268, 8750 |
| Msp20I | TGGCCA | 1 cut(s) | 4441 |
| MspI | CCGG | 9 cut(s) | 161, 3182, 4901, 5088, 5228, 5999, 7226, 7751, 7964 |
| MunI | CAATTG | 7 cut(s) | 258, 696, 1676, 1802, 3338, 3506, 7179 |
| Mva1269I | GAATGC | 1 cut(s) | 3437 |
| MvaI | CCWGG | 8 cut(s) | 1050, 2875, 3437, 3759, 3810, 4617, 7445, 8185 |
| NciI | CCSGG | 2 cut(s) | 3183, 7752 |
| NcoI | CCATGG | 3 cut(s) | 2418, 6445, 7265 |
| NdeI | CATATG | 4 cut(s) | 1254, 4206, 4320, 8112 |
| NheI | GCTAGC | 1 cut(s) | 2398 |
| NsbI | TGCGCA | 2 cut(s) | 1215, 5738 |
| NsiI | ATGCAT | 1 cut(s) | 429 |
| NspI | RCATGY | 5 cut(s) | 1358, 4832, 5322, 5718, 7923 |
| NspV | TTCGAA | 2 cut(s) | 2248, 3682 |
| PaeR7I | CTCGAG | 2 cut(s) | 3381, 7623 |
| PagI | TCATGA | 3 cut(s) | 2650, 2824, 6394 |
| PasI | CCCWGGG | 2 cut(s) | 7444, 8184 |
| PceI | AGGCCT | 5 cut(s) | 8229, 8239, 8323, 8425, 8596 |
| PciI | ACATGT | 4 cut(s) | 1354, 4828, 5318, 5714 |
| PciSI | GCTCTTC | 4 cut(s) | 1314, 1587, 5466, 5562 |
| PctI | GAATGC | 1 cut(s) | 3437 |
| PfoI | TCCNGGA | 1 cut(s) | 2873 |
| PinAI | ACCGGT | 2 cut(s) | 4900, 7963 |
| Ppu21I | YACGTR | 1 cut(s) | 1526 |
| PpuMI | RGGWCCY | 1 cut(s) | 2787 |
| PscI | ACATGT | 4 cut(s) | 1354, 4828, 5318, 5714 |
| Psp1406I | AACGTT | 1 cut(s) | 2088 |
| Psp5II | RGGWCCY | 1 cut(s) | 2787 |
| Psp6I | CCWGG | 8 cut(s) | 1048, 2873, 3435, 3757, 3808, 4615, 7443, 8183 |
| PspEI | GGTNACC | 1 cut(s) | 6400 |
| PspFI | CCCAGC | 7 cut(s) | 32, 2382, 2790, 4086, 4487, 6830, 7524 |
| PspGI | CCWGG | 8 cut(s) | 1048, 2873, 3435, 3757, 3808, 4615, 7443, 8183 |
| PspPPI | RGGWCCY | 1 cut(s) | 2787 |
| PspXI | VCTCGAGB | 1 cut(s) | 3381 |
| PstI | CTGCAG | 8 cut(s) | 1489, 4147, 4515, 5680, 6958, 7605, 8394, 8553 |
| PstNI | CAGNNNCTG | 8 cut(s) | 2116, 3764, 4195, 4198, 4312, 6997, 8389, 8557 |
| RseI | CAYNNNNRTG | 8 cut(s) | 1391, 2135, 2177, 3430, 3893, 8196, 8268, 8750 |
| SalI | GTCGAC | 1 cut(s) | 4029 |
| SapI | GCTCTTC | 4 cut(s) | 1314, 1587, 5466, 5562 |
| ScaI | AGTACT | 1 cut(s) | 7726 |
| SduI | GDGCHC | 8 cut(s) | 472, 3515, 3878, 3888, 3957, 4134, 4401, 8193 |
| Sfr274I | CTCGAG | 2 cut(s) | 3381, 7623 |
| SfuI | TTCGAA | 2 cut(s) | 2248, 3682 |
| SinI | GGWCC | 8 cut(s) | 1889, 2609, 2787, 3983, 7458, 7853, 7934, 7948 |
| SlaI | CTCGAG | 2 cut(s) | 3381, 7623 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 1391, 2135, 2177, 3430, 3893, 8196, 8268, 8750 |
| SmlI | CTYRAG | 8 cut(s) | 358, 3381, 3795, 4692, 4740, 7623, 7737, 8653 |
| SmoI | CTYRAG | 8 cut(s) | 358, 3381, 3795, 4692, 4740, 7623, 7737, 8653 |
| SseBI | AGGCCT | 5 cut(s) | 8229, 8239, 8323, 8425, 8596 |
| SspI | AATATT | 1 cut(s) | 5758 |
| StuI | AGGCCT | 5 cut(s) | 8229, 8239, 8323, 8425, 8596 |
| StyI | CCWWGG | 4 cut(s) | 2418, 2464, 6445, 7265 |
| TaiI | ACGT | 7 cut(s) | 190, 1528, 2091, 3379, 4388, 7264, 8125 |
| TaqII | GACCGA | 2 cut(s) | 1872, 5912 |
| TatI | WGTACW | 7 cut(s) | 997, 1102, 3280, 6653, 7345, 7724, 7976 |
| TauI | GCSGC | 5 cut(s) | 8, 2000, 4183, 5368, 8640 |
| TscAI | CASTG | 8 cut(s) | 1178, 1494, 2850, 4134, 4152, 7543, 8064, 8757 |
| TspRI | CASTG | 8 cut(s) | 1178, 1494, 2850, 4134, 4152, 7543, 8064, 8757 |
| VneI | GTGCAC | 1 cut(s) | 3874 |
| VpaK11BI | GGWCC | 8 cut(s) | 1889, 2609, 2787, 3983, 7458, 7853, 7934, 7948 |
| XbaI | TCTAGA | 2 cut(s) | 455, 5179 |
| XceI | RCATGY | 5 cut(s) | 1358, 4832, 5322, 5718, 7923 |
| XhoI | CTCGAG | 2 cut(s) | 3381, 7623 |
| XmiI | GTMKAC | 2 cut(s) | 196, 4030 |
| ZraI | GACGTC | 1 cut(s) | 188 |
| ZrmI | AGTACT | 1 cut(s) | 7726 |
| Zsp2I | ATGCAT | 1 cut(s) | 429 |