Domain in histone families 1 and 5
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1433 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1049 |
| AccIII | TCCGGA | 1 cut(s) | 1090 |
| AciI | CCGC | 2 cut(s) | 1097, 1582 |
| AclWI | GGATC | 7 cut(s) | 280, 760, 926, 978, 1103, 1283, 1296 |
| AcsI | RAATTY | 4 cut(s) | 14, 122, 654, 1531 |
| AcuI | CTGAAG | 6 cut(s) | 69, 417, 432, 591, 917, 1355 |
| AfaI | GTAC | 3 cut(s) | 1116, 1478, 1495 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1049, 1214 |
| AhlI | ACTAGT | 1 cut(s) | 851 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 35, 1036, 1068 |
| AluBI | AGCT | 5 cut(s) | 517, 694, 818, 1369, 1519 |
| AluI | AGCT | 5 cut(s) | 517, 694, 818, 1369, 1519 |
| Alw26I | GTCTC | 3 cut(s) | 426, 733, 1509 |
| AlwI | GGATC | 7 cut(s) | 280, 760, 926, 978, 1103, 1283, 1296 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 862 |
| Ama87I | CYCGRG | 2 cut(s) | 1211, 1392 |
| Aor13HI | TCCGGA | 1 cut(s) | 1090 |
| AoxI | GGCC | 3 cut(s) | 1216, 1357, 1655 |
| ApeKI | GCWGC | 8 cut(s) | 6, 76, 442, 818, 821, 1099, 1369, 1372 |
| ApoI | RAATTY | 4 cut(s) | 14, 122, 654, 1531 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 18, 231 |
| AspLEI | GCGC | 1 cut(s) | 568 |
| AspS9I | GGNCC | 2 cut(s) | 1216, 1622 |
| AsuHPI | GGTGA | 6 cut(s) | 95, 265, 403, 484, 1263, 1443 |
| AvaI | CYCGRG | 2 cut(s) | 1211, 1392 |
| AvaII | GGWCC | 1 cut(s) | 1622 |
| BamHI | GGATCC | 1 cut(s) | 1288 |
| BauI | CACGAG | 1 cut(s) | 982 |
| BbsI | GAAGAC | 1 cut(s) | 1079 |
| BbvI | GCAGC | 8 cut(s) | 18, 88, 454, 805, 833, 1111, 1356, 1384 |
| BccI | CCATC | 2 cut(s) | 37, 482 |
| BceAI | ACGGC | 2 cut(s) | 815, 1642 |
| BcoDI | GTCTC | 3 cut(s) | 426, 733, 1509 |
| BcuI | ACTAGT | 1 cut(s) | 851 |
| BfaI | CTAG | 5 cut(s) | 699, 852, 891, 1431, 1647 |
| BfmI | CTRYAG | 2 cut(s) | 819, 1370 |
| BfoI | RGCGCY | 1 cut(s) | 569 |
| BfuAI | ACCTGC | 1 cut(s) | 1433 |
| BglII | AGATCT | 2 cut(s) | 1388, 1433 |
| BisI | GCNGC | 9 cut(s) | 7, 77, 443, 819, 822, 1097, 1100, 1370, 1373 |
| BlsI | GCNGC | 9 cut(s) | 8, 78, 444, 820, 823, 1098, 1101, 1371, 1374 |
| BmcAI | AGTACT | 1 cut(s) | 1495 |
| Bme18I | GGWCC | 1 cut(s) | 1622 |
| BmeT110I | CYCGRG | 2 cut(s) | 1211, 1392 |
| BmgT120I | GGNCC | 2 cut(s) | 1216, 1622 |
| BmiI | GGNNCC | 3 cut(s) | 1095, 1185, 1290 |
| BmsI | GCATC | 1 cut(s) | 535 |
| BpiI | GAAGAC | 1 cut(s) | 1079 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 713, 745 |
| BpuEI | CTTGAG | 1 cut(s) | 1491 |
| BsaI | GGTCTC | 2 cut(s) | 426, 1509 |
| BsaJI | CCNNGG | 2 cut(s) | 436, 1212 |
| BsaWI | WCCGGW | 1 cut(s) | 1090 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1049, 1214 |
| Bse1I | ACTGG | 1 cut(s) | 1112 |
| Bse3DI | GCAATG | 1 cut(s) | 617 |
| BseAI | TCCGGA | 1 cut(s) | 1090 |
| BseDI | CCNNGG | 2 cut(s) | 436, 1212 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1049, 1214 |
| BseMI | GCAATG | 1 cut(s) | 617 |
| BseMII | CTCAG | 2 cut(s) | 339, 744 |
| BseNI | ACTGG | 1 cut(s) | 1112 |
| BseRI | GAGGAG | 2 cut(s) | 170, 834 |
| BseXI | GCAGC | 8 cut(s) | 18, 88, 454, 805, 833, 1111, 1356, 1384 |
| BseYI | CCCAGC | 2 cut(s) | 1293, 1519 |
| Bsh1285I | CGRYCG | 1 cut(s) | 481 |
| BshFI | GGCC | 3 cut(s) | 1218, 1359, 1657 |
| BsiEI | CGRYCG | 1 cut(s) | 481 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1211, 1392 |
| BsiSI | CCGG | 1 cut(s) | 1091 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1049, 1214 |
| BsmAI | GTCTC | 3 cut(s) | 426, 733, 1509 |
| BsnI | GGCC | 3 cut(s) | 1218, 1359, 1657 |
| Bso31I | GGTCTC | 2 cut(s) | 426, 1509 |
| BsoBI | CYCGRG | 2 cut(s) | 1211, 1392 |
| Bsp13I | TCCGGA | 1 cut(s) | 1090 |
| Bsp19I | CCATGG | 1 cut(s) | 436 |
| BspACI | CCGC | 2 cut(s) | 1097, 1582 |
| BspANI | GGCC | 3 cut(s) | 1218, 1359, 1657 |
| BspCNI | CTCAG | 2 cut(s) | 340, 743 |
| BspEI | TCCGGA | 1 cut(s) | 1090 |
| BspHI | TCATGA | 1 cut(s) | 385 |
| BspLI | GGNNCC | 3 cut(s) | 1095, 1185, 1290 |
| BspMAI | CTGCAG | 2 cut(s) | 823, 1374 |
| BspMI | ACCTGC | 1 cut(s) | 1433 |
| BspPI | GGATC | 7 cut(s) | 280, 760, 926, 978, 1103, 1283, 1296 |
| BspTNI | GGTCTC | 2 cut(s) | 426, 1509 |
| BsrDI | GCAATG | 1 cut(s) | 617 |
| BsrI | ACTGG | 1 cut(s) | 1112 |
| BssECI | CCNNGG | 2 cut(s) | 436, 1212 |
| BssSI | CACGAG | 1 cut(s) | 982 |
| BssT1I | CCWWGG | 1 cut(s) | 436 |
| Bst2BI | CACGAG | 1 cut(s) | 982 |
| Bst4CI | ACNGT | 6 cut(s) | 248, 482, 591, 1176, 1407, 1568 |
| Bst6I | CTCTTC | 2 cut(s) | 675, 1331 |
| BstC8I | GCNNGC | 1 cut(s) | 778 |
| BstDEI | CTNAG | 4 cut(s) | 348, 730, 1024, 1385 |
| BstDSI | CCRYGG | 1 cut(s) | 436 |
| BstH2I | RGCGCY | 1 cut(s) | 569 |
| BstHHI | GCGC | 1 cut(s) | 568 |
| BstMAI | GTCTC | 3 cut(s) | 426, 733, 1509 |
| BstMCI | CGRYCG | 1 cut(s) | 481 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 827, 1378 |
| BstSFI | CTRYAG | 2 cut(s) | 819, 1370 |
| BstV1I | GCAGC | 8 cut(s) | 18, 88, 454, 805, 833, 1111, 1356, 1384 |
| BstV2I | GAAGAC | 1 cut(s) | 1079 |
| BstX2I | RGATCY | 6 cut(s) | 765, 970, 1108, 1288, 1388, 1433 |
| BstYI | RGATCY | 6 cut(s) | 765, 970, 1108, 1288, 1388, 1433 |
| BsuRI | GGCC | 3 cut(s) | 1218, 1359, 1657 |
| BtgI | CCRYGG | 1 cut(s) | 436 |
| BtsIMutI | CAGTG | 1 cut(s) | 1564 |
| BveI | ACCTGC | 1 cut(s) | 1433 |
| Cac8I | GCNNGC | 1 cut(s) | 778 |
| CaiI | CAGNNNCTG | 1 cut(s) | 862 |
| CciI | TCATGA | 1 cut(s) | 385 |
| CfoI | GCGC | 1 cut(s) | 568 |
| Cfr13I | GGNCC | 2 cut(s) | 1216, 1622 |
| Csp6I | GTAC | 3 cut(s) | 1115, 1477, 1494 |
| CviAII | CATG | 4 cut(s) | 35, 386, 437, 1158 |
| CviQI | GTAC | 3 cut(s) | 1115, 1477, 1494 |
| DdeI | CTNAG | 4 cut(s) | 348, 730, 1024, 1385 |
| Eam1104I | CTCTTC | 2 cut(s) | 675, 1331 |
| EarI | CTCTTC | 2 cut(s) | 675, 1331 |
| Eco130I | CCWWGG | 1 cut(s) | 436 |
| Eco31I | GGTCTC | 2 cut(s) | 426, 1509 |
| Eco32I | GATATC | 1 cut(s) | 361 |
| Eco47I | GGWCC | 1 cut(s) | 1622 |
| Eco57I | CTGAAG | 6 cut(s) | 69, 417, 432, 591, 917, 1355 |
| Eco88I | CYCGRG | 2 cut(s) | 1211, 1392 |
| EcoRV | GATATC | 1 cut(s) | 361 |
| EcoT14I | CCWWGG | 1 cut(s) | 436 |
| ErhI | CCWWGG | 1 cut(s) | 436 |
| FaeI | CATG | 4 cut(s) | 38, 389, 440, 1161 |
| FatI | CATG | 4 cut(s) | 34, 385, 436, 1157 |
| FauI | CCCGC | 1 cut(s) | 1575 |
| Fnu4HI | GCNGC | 9 cut(s) | 7, 77, 443, 819, 822, 1097, 1100, 1370, 1373 |
| Fsp4HI | GCNGC | 9 cut(s) | 7, 77, 443, 819, 822, 1097, 1100, 1370, 1373 |
| FspBI | CTAG | 5 cut(s) | 699, 852, 891, 1431, 1647 |
| GlaI | GCGC | 1 cut(s) | 567 |
| GluI | GCNGC | 9 cut(s) | 7, 77, 443, 819, 822, 1097, 1100, 1370, 1373 |
| GsaI | CCCAGC | 2 cut(s) | 1297, 1523 |
| HaeII | RGCGCY | 1 cut(s) | 569 |
| HaeIII | GGCC | 3 cut(s) | 1218, 1359, 1657 |
| HapII | CCGG | 1 cut(s) | 1091 |
| HhaI | GCGC | 1 cut(s) | 568 |
| Hin1II | CATG | 4 cut(s) | 38, 389, 440, 1161 |
| Hin6I | GCGC | 1 cut(s) | 566 |
| HinP1I | GCGC | 1 cut(s) | 566 |
| HinfI | GANTC | 4 cut(s) | 103, 382, 791, 1282 |
| HpaII | CCGG | 1 cut(s) | 1091 |
| HphI | GGTGA | 6 cut(s) | 95, 265, 403, 484, 1263, 1443 |
| Hpy166II | GTNNAC | 2 cut(s) | 212, 1418 |
| Hpy188I | TCNGA | 6 cut(s) | 102, 108, 733, 858, 1411, 1663 |
| Hpy8I | GTNNAC | 2 cut(s) | 212, 1418 |
| HpyAV | CCTTC | 3 cut(s) | 632, 1060, 1272 |
| HpyCH4III | ACNGT | 6 cut(s) | 248, 482, 591, 1176, 1407, 1568 |
| HpyCH4V | TGCA | 9 cut(s) | 149, 374, 739, 787, 821, 955, 1372, 1499, 1638 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 827, 1378 |
| HpyF3I | CTNAG | 4 cut(s) | 348, 730, 1024, 1385 |
| Hsp92II | CATG | 4 cut(s) | 38, 389, 440, 1161 |
| HspAI | GCGC | 1 cut(s) | 566 |
| Kpn2I | TCCGGA | 1 cut(s) | 1090 |
| LmnI | GCTCC | 1 cut(s) | 1093 |
| Lsp1109I | GCAGC | 8 cut(s) | 18, 88, 454, 805, 833, 1111, 1356, 1384 |
| LweI | GCATC | 1 cut(s) | 535 |
| MaeI | CTAG | 5 cut(s) | 699, 852, 891, 1431, 1647 |
| MfeI | CAATTG | 2 cut(s) | 1044, 1481 |
| MflI | RGATCY | 6 cut(s) | 765, 970, 1108, 1288, 1388, 1433 |
| MlyI | GAGTC | 2 cut(s) | 376, 800 |
| MmeI | TCCRAC | 1 cut(s) | 948 |
| MroI | TCCGGA | 1 cut(s) | 1090 |
| MroXI | GAANNNNTTC | 2 cut(s) | 18, 231 |
| MseI | TTAA | 5 cut(s) | 645, 758, 771, 834, 1301 |
| MspA1I | CMGCKG | 1 cut(s) | 1369 |
| MspI | CCGG | 1 cut(s) | 1091 |
| MunI | CAATTG | 2 cut(s) | 1044, 1481 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 827, 1378 |
| NcoI | CCATGG | 1 cut(s) | 436 |
| NlaIII | CATG | 4 cut(s) | 38, 389, 440, 1161 |
| NlaIV | GGNNCC | 3 cut(s) | 1095, 1185, 1290 |
| NmuCI | GTSAC | 6 cut(s) | 166, 187, 391, 415, 619, 1176 |
| PaeR7I | CTCGAG | 1 cut(s) | 1392 |
| PagI | TCATGA | 1 cut(s) | 385 |
| PdmI | GAANNNNTTC | 2 cut(s) | 18, 231 |
| PfeI | GAWTC | 2 cut(s) | 103, 1282 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1049 |
| PkrI | GCNGC | 9 cut(s) | 8, 78, 444, 820, 823, 1098, 1101, 1371, 1374 |
| PleI | GAGTC | 2 cut(s) | 376, 799 |
| PpsI | GAGTC | 2 cut(s) | 376, 799 |
| PspFI | CCCAGC | 2 cut(s) | 1293, 1519 |
| PspN4I | GGNNCC | 3 cut(s) | 1095, 1185, 1290 |
| PspPI | GGNCC | 2 cut(s) | 1216, 1622 |
| PstI | CTGCAG | 2 cut(s) | 823, 1374 |
| PstNI | CAGNNNCTG | 1 cut(s) | 862 |
| PsuI | RGATCY | 6 cut(s) | 765, 970, 1108, 1288, 1388, 1433 |
| PvuII | CAGCTG | 1 cut(s) | 1369 |
| RsaI | GTAC | 3 cut(s) | 1116, 1478, 1495 |
| RsaNI | GTAC | 3 cut(s) | 1115, 1477, 1494 |
| SaqAI | TTAA | 5 cut(s) | 645, 758, 771, 834, 1301 |
| SatI | GCNGC | 9 cut(s) | 7, 77, 443, 819, 822, 1097, 1100, 1370, 1373 |
| Sau96I | GGNCC | 2 cut(s) | 1216, 1622 |
| ScaI | AGTACT | 1 cut(s) | 1495 |
| SchI | GAGTC | 2 cut(s) | 376, 800 |
| SfaNI | GCATC | 1 cut(s) | 535 |
| SfcI | CTRYAG | 2 cut(s) | 819, 1370 |
| Sfr274I | CTCGAG | 1 cut(s) | 1392 |
| SinI | GGWCC | 1 cut(s) | 1622 |
| SlaI | CTCGAG | 1 cut(s) | 1392 |
| SmlI | CTYRAG | 2 cut(s) | 1392, 1506 |
| SmoI | CTYRAG | 2 cut(s) | 1392, 1506 |
| SpeI | ACTAGT | 1 cut(s) | 851 |
| SsiI | CCGC | 2 cut(s) | 1097, 1582 |
| SspMI | CTAG | 5 cut(s) | 699, 852, 891, 1431, 1647 |
| StyI | CCWWGG | 1 cut(s) | 436 |
| TaaI | ACNGT | 6 cut(s) | 248, 482, 591, 1176, 1407, 1568 |
| TaqI | TCGA | 3 cut(s) | 477, 1393, 1544 |
| TaqII | GACCGA | 1 cut(s) | 638 |
| TatI | WGTACW | 2 cut(s) | 1114, 1493 |
| TauI | GCSGC | 1 cut(s) | 1099 |
| TfiI | GAWTC | 2 cut(s) | 103, 1282 |
| Tru1I | TTAA | 5 cut(s) | 645, 758, 771, 834, 1301 |
| Tru9I | TTAA | 5 cut(s) | 645, 758, 771, 834, 1301 |
| TscAI | CASTG | 1 cut(s) | 1571 |
| TseFI | GTSAC | 6 cut(s) | 166, 187, 391, 415, 619, 1176 |
| TseI | GCWGC | 8 cut(s) | 6, 76, 442, 818, 821, 1099, 1369, 1372 |
| Tsp45I | GTSAC | 6 cut(s) | 166, 187, 391, 415, 619, 1176 |
| TspDTI | ATGAA | 8 cut(s) | 69, 306, 318, 471, 525, 867, 1437, 1524 |
| TspRI | CASTG | 1 cut(s) | 1571 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1049 |
| VpaK11BI | GGWCC | 1 cut(s) | 1622 |
| XapI | RAATTY | 4 cut(s) | 14, 122, 654, 1531 |
| XhoI | CTCGAG | 1 cut(s) | 1392 |
| XmnI | GAANNNNTTC | 2 cut(s) | 18, 231 |
| XspI | CTAG | 5 cut(s) | 699, 852, 891, 1431, 1647 |
| ZrmI | AGTACT | 1 cut(s) | 1495 |