Rh7CG241200

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000827
Physical Location & Seq
Forward (+)
22568574 .. 22570567
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG241200.1

Sequence Viewer

Length: 1146 bp
ATGCCTGATTCTGAACAACCTCAACAACAGGAGATTGGAAATTCAGATTTGTTGTGGGAACCGCCAACAATGGAAGAAGAGAATGAAAAATTATCTGGACATCTTAGAAAGAGAATTTGTTTAAGCATTGAAGCAAATCATGAGAAAGAAAAGCAAATGCAAGTTCAAAATGCTGAAGGCCATCCTTATCTTCGTAGTCAAGAGAAGCTGTCTGTATCTCTGCTAGTCCCAAGTTATCCAGATGTCTTTGTGCACTCACCAAACTATGAGCTGGAGACCCAGCAACCAAAAGTTCAAAAGACAGAAAGACCTCTCGAAATCAAATCGCTGTCAGTTGAGGGAGGAATTATTGCTCATGTATCCAGGACAAACCTTATAGAATCTTCTGTCGATTTGCTTCAGGAAGAACAGGAGATTGTTCCTGAGCTAACATATCAAGAAAACCTTAAAGAGCAAGAACAAGAAATGCAGTCATTTAGTCACGAGAAGCATCAACAAGCTATTCTTTCTGATGTGGTGAAGATGCCTGATTTTCTATTAGCAACTGGTGCGGAGCAGGGGTTGGAAAATGTGATTAAAGAAAATGCTGTTGAGCTTGAACTGACACCAAATGACCAATCTTGTCGAACACAACCTAAGCAAAAGCAGCAGCAGAGGCAACTAGGTCTTCCGGGTAAACGACCATCTGAATCTTATTGTGAAGTAGCAGAGGCACCTAAATACCAGGATGAGGACCATCAAGCAGAAAATGTGATTAAGGAGAAGGTTGTACAGTCAAGTCACCTGAGTCTTGAATTGACAGAGCAGCAGCCCAGAGATCCAATCCAGGAAAGAATGAAGCTTGATCATAAACCAGCAGAGCAAAGGCAATTGCGCCCACGTTGCCAGAGGTGCTCCAAGTCTGAATTGTCTCTCACTACATCTATGGTTGAATTATCACCAAGAAAAAATCAGGATACTGAAAGGAAAATAGAGGAAAAGACTGGAGAGTTGAAGACATCACTGGAGGAAACAGGCCAAGGACAGCTGCAGCAGAGGCAGCTTCGAACGAGAAGCAAAAACCTGTCTGAATCCAAGCATTCATTGCTTTCAAACACTGGAATGTCACAAGGGATCAGCCAGGAGCCGAAAATTCATCTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

381

Amino Acids

43.72

Weight (kDa)

5.3

Isoelectric Point (pI)

66.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 712
AciI CCGC 2 cut(s) 62, 551
AclWI GGATC 2 cut(s) 812, 1121
AcsI RAATTY 3 cut(s) 40, 114, 1131
AcuI CTGAAG 2 cut(s) 195, 383
AfaI GTAC 1 cut(s) 771
AfiI CCNNNNNNNGG 1 cut(s) 730
AgsI TTSAA 8 cut(s) 131, 167, 296, 599, 794, 932, 994, 1092
AjnI CCWGG 4 cut(s) 362, 723, 825, 1119
AluBI AGCT 8 cut(s) 208, 271, 427, 500, 595, 841, 1027, 1042
AluI AGCT 8 cut(s) 208, 271, 427, 500, 595, 841, 1027, 1042
Alw21I GWGCWC 2 cut(s) 255, 896
Alw26I GTCTC 2 cut(s) 269, 915
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 2 cut(s) 812, 1121
AoxI GGCC 2 cut(s) 178, 1015
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 7 cut(s) 646, 649, 805, 808, 1027, 1030, 1039
ApoI RAATTY 3 cut(s) 40, 114, 1131
AspLEI GCGC 1 cut(s) 876
AspS9I GGNCC 1 cut(s) 733
AsuC2I CCSGG 1 cut(s) 672
AsuHPI GGTGA 4 cut(s) 249, 529, 773, 930
AsuII TTCGAA 1 cut(s) 1045
AvaII GGWCC 1 cut(s) 733
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 1 cut(s) 712
BauI CACGAG 1 cut(s) 482
BbsI GAAGAC 2 cut(s) 659, 1001
Bbv12I GWGCWC 2 cut(s) 255, 896
BbvI GCAGC 7 cut(s) 658, 661, 817, 820, 1014, 1042, 1051
BccI CCATC 3 cut(s) 189, 691, 744
BciT130I CCWGG 4 cut(s) 364, 725, 827, 1121
BciVI GTATCC 2 cut(s) 370, 949
BclI TGATCA 1 cut(s) 844
BcnI CCSGG 1 cut(s) 672
BcoDI GTCTC 2 cut(s) 269, 915
BfaI CTAG 2 cut(s) 224, 662
BfmI CTRYAG 1 cut(s) 1028
BfuI GTATCC 2 cut(s) 370, 949
BisI GCNGC 7 cut(s) 647, 650, 806, 809, 1028, 1031, 1040
BlsI GCNGC 7 cut(s) 648, 651, 807, 810, 1029, 1032, 1041
Bme1390I CCNGG 5 cut(s) 364, 672, 725, 827, 1121
Bme18I GGWCC 1 cut(s) 733
BmgT120I GGNCC 1 cut(s) 733
BmiI GGNNCC 3 cut(s) 60, 714, 1125
BmrFI CCNGG 5 cut(s) 364, 672, 725, 827, 1121
BmsI GCATC 2 cut(s) 499, 513
BpiI GAAGAC 2 cut(s) 659, 1001
BpmI CTGGAG 3 cut(s) 293, 1005, 1025
Bpu10I CCTNAGC 2 cut(s) 423, 636
Bpu14I TTCGAA 1 cut(s) 1045
BpuMI CCSGG 1 cut(s) 672
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 1018
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse1I ACTGG 4 cut(s) 550, 988, 1008, 1102
Bse3DI GCAATG 1 cut(s) 1082
BseBI CCWGG 4 cut(s) 364, 725, 827, 1121
BseDI CCNNGG 1 cut(s) 1018
BseGI GGATG 2 cut(s) 181, 733
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 1 cut(s) 1082
BseMII CTCAG 2 cut(s) 414, 776
BseNI ACTGG 4 cut(s) 550, 988, 1008, 1102
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 7 cut(s) 658, 661, 817, 820, 1014, 1042, 1051
BseYI CCCAGC 1 cut(s) 279
BshFI GGCC 2 cut(s) 180, 1017
BshNI GGYRCC 1 cut(s) 712
BsiHKAI GWGCWC 2 cut(s) 255, 896
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 730
BsmAI GTCTC 2 cut(s) 269, 915
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 1078
BsnI GGCC 2 cut(s) 180, 1017
Bso31I GGTCTC 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 1045
Bsp1286I GDGCHC 2 cut(s) 255, 896
Bsp1407I TGTACA 1 cut(s) 769
Bsp143I GATC 3 cut(s) 817, 844, 1113
BspACI CCGC 2 cut(s) 62, 551
BspANI GGCC 2 cut(s) 180, 1017
BspCNI CTCAG 2 cut(s) 415, 777
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 3 cut(s) 60, 714, 1125
BspMAI CTGCAG 1 cut(s) 1032
BspPI GGATC 2 cut(s) 812, 1121
BspT104I TTCGAA 1 cut(s) 1045
BspT107I GGYRCC 1 cut(s) 712
BspTNI GGTCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 1082
BsrGI TGTACA 1 cut(s) 769
BsrI ACTGG 4 cut(s) 550, 988, 1008, 1102
BssECI CCNNGG 1 cut(s) 1018
BssMI GATC 3 cut(s) 817, 844, 1113
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 1018
Bst2BI CACGAG 1 cut(s) 482
Bst2UI CCWGG 4 cut(s) 364, 725, 827, 1121
Bst4CI ACNGT 1 cut(s) 774
Bst6I CTCTTC 1 cut(s) 72
BstAPI GCANNNNNTGC 2 cut(s) 548, 1084
BstAUI TGTACA 1 cut(s) 769
BstBI TTCGAA 1 cut(s) 1045
BstDEI CTNAG 4 cut(s) 104, 423, 636, 785
BstF5I GGATG 2 cut(s) 181, 733
BstHHI GCGC 1 cut(s) 876
BstKTI GATC 3 cut(s) 820, 847, 1116
BstMAI GTCTC 2 cut(s) 269, 915
BstMBI GATC 3 cut(s) 817, 844, 1113
BstMWI GCNNNNNNNGC 8 cut(s) 548, 646, 655, 882, 891, 1036, 1039, 1084
BstNI CCWGG 4 cut(s) 364, 725, 827, 1121
BstSCI CCNGG 5 cut(s) 362, 670, 723, 825, 1119
BstSFI CTRYAG 1 cut(s) 1028
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 7 cut(s) 658, 661, 817, 820, 1014, 1042, 1051
BstV2I GAAGAC 2 cut(s) 659, 1001
BstX2I RGATCY 1 cut(s) 817
BstYI RGATCY 1 cut(s) 817
BsuI GTATCC 2 cut(s) 370, 949
BsuRI GGCC 2 cut(s) 180, 1017
BtsCI GGATG 2 cut(s) 181, 733
BtsIMutI CAGTG 2 cut(s) 1001, 1095
CciI TCATGA 1 cut(s) 139
CfoI GCGC 1 cut(s) 876
Cfr13I GGNCC 1 cut(s) 733
Csp6I GTAC 1 cut(s) 770
CviAII CATG 2 cut(s) 140, 356
CviQI GTAC 1 cut(s) 770
DdeI CTNAG 4 cut(s) 104, 423, 636, 785
DpnI GATC 3 cut(s) 819, 846, 1115
DpnII GATC 3 cut(s) 817, 844, 1113
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 1018
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 733
Eco57I CTGAAG 2 cut(s) 195, 383
EcoRII CCWGG 4 cut(s) 362, 723, 825, 1119
EcoT14I CCWWGG 1 cut(s) 1018
ErhI CCWWGG 1 cut(s) 1018
FaeI CATG 2 cut(s) 143, 359
FaiI YATR 7 cut(s) 141, 267, 357, 377, 433, 849, 926
FalI AAGNNNNNCTT 4 cut(s) 429, 461, 489, 521
FaqI GGGAC 1 cut(s) 212
FatI CATG 2 cut(s) 139, 355
FbaI TGATCA 1 cut(s) 844
Fnu4HI GCNGC 7 cut(s) 647, 650, 806, 809, 1028, 1031, 1040
FokI GGATG 2 cut(s) 168, 740
Fsp4HI GCNGC 7 cut(s) 647, 650, 806, 809, 1028, 1031, 1040
FspBI CTAG 2 cut(s) 224, 662
GlaI GCGC 1 cut(s) 875
GluI GCNGC 7 cut(s) 647, 650, 806, 809, 1028, 1031, 1040
GsaI CCCAGC 1 cut(s) 283
GsuI CTGGAG 3 cut(s) 293, 1005, 1025
HaeIII GGCC 2 cut(s) 180, 1017
HapII CCGG 1 cut(s) 671
HhaI GCGC 1 cut(s) 876
Hin1II CATG 2 cut(s) 143, 359
Hin6I GCGC 1 cut(s) 874
HinP1I GCGC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 5 cut(s) 8, 380, 689, 787, 1070
HpaII CCGG 1 cut(s) 671
HphI GGTGA 4 cut(s) 249, 529, 773, 930
Hpy166II GTNNAC 2 cut(s) 253, 677
Hpy188I TCNGA 6 cut(s) 13, 46, 511, 688, 904, 1069
Hpy8I GTNNAC 2 cut(s) 253, 677
HpyAV CCTTC 2 cut(s) 170, 757
HpyCH4III ACNGT 1 cut(s) 774
HpyCH4IV ACGT 1 cut(s) 880
HpyCH4V TGCA 4 cut(s) 160, 253, 469, 1030
HpyF10VI GCNNNNNNNGC 8 cut(s) 548, 646, 655, 882, 891, 1036, 1039, 1084
HpyF3I CTNAG 4 cut(s) 104, 423, 636, 785
HpySE526I ACGT 1 cut(s) 880
Hsp92II CATG 2 cut(s) 143, 359
HspAI GCGC 1 cut(s) 874
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 3 cut(s) 817, 844, 1113
LmnI GCTCC 3 cut(s) 553, 899, 1123
Lsp1109I GCAGC 7 cut(s) 658, 661, 817, 820, 1014, 1042, 1051
LweI GCATC 2 cut(s) 499, 513
MaeI CTAG 2 cut(s) 224, 662
MaeII ACGT 1 cut(s) 880
MaeIII GTNAC 3 cut(s) 479, 779, 1104
MalI GATC 3 cut(s) 819, 846, 1115
MboI GATC 3 cut(s) 817, 844, 1113
MboII GAAGA 8 cut(s) 86, 89, 182, 375, 416, 532, 659, 1006
MfeI CAATTG 1 cut(s) 869
MflI RGATCY 1 cut(s) 817
MhlI GDGCHC 2 cut(s) 255, 896
MluCI AATT 9 cut(s) 40, 89, 114, 345, 794, 869, 905, 932, 1131
MlyI GAGTC 1 cut(s) 796
MmeI TCCRAC 1 cut(s) 543
MseI TTAA 4 cut(s) 122, 447, 576, 756
MslI CAYNNNNRTG 1 cut(s) 1100
MspA1I CMGCKG 1 cut(s) 1027
MspI CCGG 1 cut(s) 671
MspR9I CCNGG 5 cut(s) 364, 672, 725, 827, 1121
MunI CAATTG 1 cut(s) 869
Mva1269I GAATGC 1 cut(s) 1078
MvaI CCWGG 4 cut(s) 364, 725, 827, 1121
MwoI GCNNNNNNNGC 8 cut(s) 548, 646, 655, 882, 891, 1036, 1039, 1084
NciI CCSGG 1 cut(s) 672
NdeII GATC 3 cut(s) 817, 844, 1113
NlaIII CATG 2 cut(s) 143, 359
NlaIV GGNNCC 3 cut(s) 60, 714, 1125
NmuCI GTSAC 3 cut(s) 479, 779, 1104
NspV TTCGAA 1 cut(s) 1045
PagI TCATGA 1 cut(s) 139
PctI GAATGC 1 cut(s) 1078
PfeI GAWTC 4 cut(s) 8, 380, 689, 1070
PfoI TCCNGGA 2 cut(s) 362, 825
PkrI GCNGC 7 cut(s) 648, 651, 807, 810, 1029, 1032, 1041
PleI GAGTC 1 cut(s) 795
PpsI GAGTC 1 cut(s) 795
Psp6I CCWGG 4 cut(s) 362, 723, 825, 1119
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 4 cut(s) 362, 723, 825, 1119
PspN4I GGNNCC 3 cut(s) 60, 714, 1125
PspPI GGNCC 1 cut(s) 733
PstI CTGCAG 1 cut(s) 1032
PsuI RGATCY 1 cut(s) 817
PvuII CAGCTG 1 cut(s) 1027
RsaI GTAC 1 cut(s) 771
RsaNI GTAC 1 cut(s) 770
RseI CAYNNNNRTG 1 cut(s) 1100
SaqAI TTAA 4 cut(s) 122, 447, 576, 756
SatI GCNGC 7 cut(s) 647, 650, 806, 809, 1028, 1031, 1040
Sau3AI GATC 3 cut(s) 817, 844, 1113
Sau96I GGNCC 1 cut(s) 733
SchI GAGTC 1 cut(s) 796
ScrFI CCNGG 5 cut(s) 364, 672, 725, 827, 1121
SduI GDGCHC 2 cut(s) 255, 896
SfaNI GCATC 2 cut(s) 499, 513
SfcI CTRYAG 1 cut(s) 1028
SfuI TTCGAA 1 cut(s) 1045
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 1100
Sse9I AATT 9 cut(s) 40, 89, 114, 345, 794, 869, 905, 932, 1131
SsiI CCGC 2 cut(s) 62, 551
SspMI CTAG 2 cut(s) 224, 662
StyD4I CCNGG 5 cut(s) 362, 670, 723, 825, 1119
StyI CCWWGG 1 cut(s) 1018
TaaI ACNGT 1 cut(s) 774
TaiI ACGT 1 cut(s) 883
TaqI TCGA 4 cut(s) 315, 390, 625, 1045
TasI AATT 9 cut(s) 40, 89, 114, 345, 794, 869, 905, 932, 1131
TatI WGTACW 1 cut(s) 769
TfiI GAWTC 4 cut(s) 8, 380, 689, 1070
Tru1I TTAA 4 cut(s) 122, 447, 576, 756
Tru9I TTAA 4 cut(s) 122, 447, 576, 756
TscAI CASTG 2 cut(s) 1008, 1102
TseFI GTSAC 3 cut(s) 479, 779, 1104
TseI GCWGC 7 cut(s) 646, 649, 805, 808, 1027, 1030, 1039
Tsp45I GTSAC 3 cut(s) 479, 779, 1104
TspDTI ATGAA 4 cut(s) 99, 851, 1071, 1124
TspRI CASTG 2 cut(s) 1008, 1102
VneI GTGCAC 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 733
XapI RAATTY 3 cut(s) 40, 114, 1131
XspI CTAG 2 cut(s) 224, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.