Rh7DG234500

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000827
Physical Location & Seq
Forward (+)
23332324 .. 23333028
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG234500.1

Sequence Viewer

Length: 684 bp
ATGCCCAACACCACTGGTGCAATCGTCACTTACCAGAGATGGTCAGGTCAAACTATAGAGACCAACCCTGAAGCATTTCAAGATCTAGGACCAACACTCGCAGACCATTTGGAGAGAAAAGAGAATCATCATGGTCAACAAAAGAAGTTGAAATCCAAACCAATAGCAAGAGAAAGTCCTGATGAGTTGGCTCTCACTTCCCAGCATCTTGTGGTGGATCCTCACATTCTAGTAAAGCCTCCACAGATCAATCCAGCAGCAGTGGGACAATTGTCTCAAACAACAAAAGAGCCGCCACAGAAACAGCAGCTGCTGCGCCATATGAAACCGCGCTCATGCAGCCAAGCTGCATTGCAATCTGAACCTGATGTTTCAATAGTGGGACAATTGCCTCAAACAACAAAACAGCCGCCACAGAAACAGCAGCTGCTGCCCCATAGGAGACTACGCTCACGCAGCCAAGCCGCGTCACAATTTGAACCTGATGTTTTGATGATTGAATCACTGCCCTTAAAGCACCATTGTGAGCAGTCACAAGAAGTCAAGAACAGAAGCTTCCTAAGCAGCCACAGAAGCAAAGACGGAGGCCTCCTAAATCAAAACCGGATAGAGCTGGGACTGCTAAGCGTCAAAAGCTGCAGGAACAACCAAAAAGACAAGGGAGGCCCCCTAAGTCGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

227

Amino Acids

25.45

Weight (kDa)

9.74

Isoelectric Point (pI)

70.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 331, 467
AciI CCGC 4 cut(s) 293, 329, 410, 465
AclWI GGATC 2 cut(s) 212, 225
AcuI CTGAAG 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 675
AgsI TTSAA 5 cut(s) 80, 151, 375, 479, 500
AleI CACNNNNGTG 1 cut(s) 522
AluBI AGCT 6 cut(s) 310, 347, 427, 555, 613, 636
AluI AGCT 6 cut(s) 310, 347, 427, 555, 613, 636
Alw26I GTCTC 3 cut(s) 53, 279, 436
AlwI GGATC 2 cut(s) 212, 225
AlwNI CAGNNNCTG 4 cut(s) 310, 313, 427, 430
AoxI GGCC 2 cut(s) 586, 664
Asp700I GAANNNNTTC 1 cut(s) 75
AspLEI GCGC 2 cut(s) 318, 333
AspS9I GGNCC 2 cut(s) 89, 665
AvaII GGWCC 1 cut(s) 89
BamHI GGATCC 1 cut(s) 217
BccI CCATC 1 cut(s) 33
BcoDI GTCTC 3 cut(s) 53, 279, 436
BfaI CTAG 2 cut(s) 86, 230
BfmI CTRYAG 2 cut(s) 54, 637
BglII AGATCT 1 cut(s) 82
BlpI GCTNAGC 1 cut(s) 623
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 89, 665
BmiI GGNNCC 2 cut(s) 219, 667
BmsI GCATC 1 cut(s) 214
BoxI GACNNNNGTC 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 560
Bpu1102I GCTNAGC 1 cut(s) 623
BsaI GGTCTC 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 603
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 350
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMI GCAATG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 19
BseYI CCCAGC 2 cut(s) 201, 613
Bsh1236I CGCG 2 cut(s) 331, 467
BshFI GGCC 2 cut(s) 588, 666
BsiSI CCGG 1 cut(s) 604
BslFI GGGAC 3 cut(s) 279, 396, 630
BslI CCNNNNNNNGG 1 cut(s) 675
BsmAI GTCTC 3 cut(s) 53, 279, 436
BsmFI GGGAC 3 cut(s) 279, 396, 630
BsnI GGCC 2 cut(s) 588, 666
Bso31I GGTCTC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 82, 217, 246
Bsp1720I GCTNAGC 1 cut(s) 623
BspACI CCGC 4 cut(s) 293, 329, 410, 465
BspANI GGCC 2 cut(s) 588, 666
BspFNI CGCG 2 cut(s) 331, 467
BspLI GGNNCC 2 cut(s) 219, 667
BspMAI CTGCAG 1 cut(s) 641
BspPI GGATC 2 cut(s) 212, 225
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 350
BsrI ACTGG 1 cut(s) 19
BssMI GATC 3 cut(s) 82, 217, 246
BstAPI GCANNNNNTGC 2 cut(s) 313, 430
BstDEI CTNAG 3 cut(s) 560, 623, 671
BstFNI CGCG 2 cut(s) 331, 467
BstHHI GCGC 2 cut(s) 318, 333
BstKTI GATC 3 cut(s) 85, 220, 249
BstMAI GTCTC 3 cut(s) 53, 279, 436
BstMBI GATC 3 cut(s) 82, 217, 246
BstMWI GCNNNNNNNGC 9 cut(s) 313, 339, 430, 456, 514, 561, 573, 619, 633
BstPAI GACNNNNGTC 1 cut(s) 271
BstSFI CTRYAG 2 cut(s) 54, 637
BstUI CGCG 2 cut(s) 331, 467
BstX2I RGATCY 2 cut(s) 82, 217
BstYI RGATCY 2 cut(s) 82, 217
BsuRI GGCC 2 cut(s) 588, 666
BtsI GCAGTG 2 cut(s) 267, 503
BtsIMutI CAGTG 3 cut(s) 12, 267, 503
CaiI CAGNNNCTG 4 cut(s) 310, 313, 427, 430
CfoI GCGC 2 cut(s) 318, 333
Cfr13I GGNCC 2 cut(s) 89, 665
CseI GACGC 2 cut(s) 456, 616
CviAII CATG 2 cut(s) 131, 336
DdeI CTNAG 3 cut(s) 560, 623, 671
DpnI GATC 3 cut(s) 84, 219, 248
DpnII GATC 3 cut(s) 82, 217, 246
Eco147I AGGCCT 1 cut(s) 588
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 665
FaeI CATG 2 cut(s) 134, 339
FaiI YATR 6 cut(s) 56, 132, 321, 323, 337, 438
FaqI GGGAC 3 cut(s) 279, 396, 630
FatI CATG 2 cut(s) 130, 335
FauNDI CATATG 1 cut(s) 321
FspBI CTAG 2 cut(s) 86, 230
GlaI GCGC 2 cut(s) 317, 332
GsaI CCCAGC 2 cut(s) 205, 617
HaeIII GGCC 2 cut(s) 588, 666
HapII CCGG 1 cut(s) 604
HgaI GACGC 2 cut(s) 456, 616
HhaI GCGC 2 cut(s) 318, 333
Hin1II CATG 2 cut(s) 134, 339
Hin6I GCGC 2 cut(s) 316, 331
HinP1I GCGC 2 cut(s) 316, 331
HincII GTYRAC 1 cut(s) 137
HindII GTYRAC 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 553
HinfI GANTC 2 cut(s) 124, 500
HpaII CCGG 1 cut(s) 604
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 361, 678
Hpy188III TCNNGA 3 cut(s) 80, 179, 544
Hpy8I GTNNAC 1 cut(s) 137
HpyCH4V TGCA 5 cut(s) 20, 339, 350, 355, 639
HpyF10VI GCNNNNNNNGC 9 cut(s) 313, 339, 430, 456, 514, 561, 573, 619, 633
HpyF3I CTNAG 3 cut(s) 560, 623, 671
Hsp92II CATG 2 cut(s) 134, 339
HspAI GCGC 2 cut(s) 316, 331
Kzo9I GATC 3 cut(s) 82, 217, 246
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 86, 230
MaeIII GTNAC 3 cut(s) 25, 468, 531
MalI GATC 3 cut(s) 84, 219, 248
MboI GATC 3 cut(s) 82, 217, 246
MfeI CAATTG 2 cut(s) 269, 386
MflI RGATCY 2 cut(s) 82, 217
MluCI AATT 3 cut(s) 269, 386, 473
MmeI TCCRAC 1 cut(s) 656
MnlI CCTC 6 cut(s) 231, 249, 402, 578, 599, 656
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 2 cut(s) 512, 682
MslI CAYNNNNRTG 1 cut(s) 522
MspA1I CMGCKG 2 cut(s) 310, 427
MspI CCGG 1 cut(s) 604
MunI CAATTG 2 cut(s) 269, 386
MvnI CGCG 2 cut(s) 331, 467
MwoI GCNNNNNNNGC 9 cut(s) 313, 339, 430, 456, 514, 561, 573, 619, 633
NdeI CATATG 1 cut(s) 321
NdeII GATC 3 cut(s) 82, 217, 246
NlaIII CATG 2 cut(s) 134, 339
NlaIV GGNNCC 2 cut(s) 219, 667
NmuCI GTSAC 3 cut(s) 25, 468, 531
OliI CACNNNNGTG 1 cut(s) 522
PceI AGGCCT 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 124, 500
PshAI GACNNNNGTC 1 cut(s) 271
PspFI CCCAGC 2 cut(s) 201, 613
PspN4I GGNNCC 2 cut(s) 219, 667
PspPI GGNCC 2 cut(s) 89, 665
PstI CTGCAG 1 cut(s) 641
PstNI CAGNNNCTG 4 cut(s) 310, 313, 427, 430
PsuI RGATCY 2 cut(s) 82, 217
PvuII CAGCTG 2 cut(s) 310, 427
RseI CAYNNNNRTG 1 cut(s) 522
SaqAI TTAA 2 cut(s) 512, 682
Sau3AI GATC 3 cut(s) 82, 217, 246
Sau96I GGNCC 2 cut(s) 89, 665
SetI ASST 9 cut(s) 49, 312, 349, 367, 429, 484, 557, 615, 638
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 2 cut(s) 54, 637
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 522
Sse9I AATT 3 cut(s) 269, 386, 473
SseBI AGGCCT 1 cut(s) 588
SsiI CCGC 4 cut(s) 293, 329, 410, 465
SspMI CTAG 2 cut(s) 86, 230
StuI AGGCCT 1 cut(s) 588
TasI AATT 3 cut(s) 269, 386, 473
TauI GCSGC 3 cut(s) 295, 412, 467
TfiI GAWTC 2 cut(s) 124, 500
Tru1I TTAA 2 cut(s) 512, 682
Tru9I TTAA 2 cut(s) 512, 682
TscAI CASTG 3 cut(s) 19, 267, 510
TseFI GTSAC 3 cut(s) 25, 468, 531
Tsp45I GTSAC 3 cut(s) 25, 468, 531
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 3 cut(s) 19, 267, 510
VpaK11BI GGWCC 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 2 cut(s) 86, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.