Domain in histone families 1 and 5
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1209 |
| Acc16I | TGCGCA | 1 cut(s) | 932 |
| Acc36I | ACCTGC | 2 cut(s) | 2861, 3688 |
| AciI | CCGC | 4 cut(s) | 560, 2653, 3570, 3835 |
| AclWI | GGATC | 7 cut(s) | 162, 1273, 2008, 2307, 2531, 2711, 2724 |
| AcsI | RAATTY | 5 cut(s) | 749, 1325, 1902, 2829, 2959 |
| AcyI | GRCGYC | 1 cut(s) | 3988 |
| AfaI | GTAC | 6 cut(s) | 1143, 1849, 2544, 2923, 3175, 3847 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1199, 2642, 3865 |
| AflIII | ACRYGT | 3 cut(s) | 22, 512, 908 |
| AgeI | ACCGGT | 2 cut(s) | 94, 3160 |
| AjnI | CCWGG | 1 cut(s) | 2640 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1419, 1451, 2365, 2397 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1002, 1034 |
| Alw21I | GWGCWC | 1 cut(s) | 3390 |
| Alw26I | GTCTC | 3 cut(s) | 296, 1629, 2937 |
| AlwI | GGATC | 7 cut(s) | 162, 1273, 2008, 2307, 2531, 2711, 2724 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2191, 3502, 3586, 3754 |
| Ama87I | CYCGRG | 1 cut(s) | 2820 |
| ApoI | RAATTY | 5 cut(s) | 749, 1325, 1902, 2829, 2959 |
| AsiGI | ACCGGT | 2 cut(s) | 94, 3160 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 96, 369, 576, 753, 1131, 1221, 1434, 3264 |
| AspLEI | GCGC | 1 cut(s) | 933 |
| AspS9I | GGNCC | 5 cut(s) | 2644, 2655, 3050, 3131, 3933 |
| AsuC2I | CCSGG | 1 cut(s) | 2949 |
| AvaI | CYCGRG | 1 cut(s) | 2820 |
| AvaII | GGWCC | 3 cut(s) | 2655, 3050, 3131 |
| BamHI | GGATCC | 1 cut(s) | 2716 |
| BbsI | GAAGAC | 2 cut(s) | 2771, 3876 |
| Bbv12I | GWGCWC | 1 cut(s) | 3390 |
| BbvCI | CCTCAGC | 1 cut(s) | 2444 |
| BceAI | ACGGC | 1 cut(s) | 2144 |
| BciT130I | CCWGG | 1 cut(s) | 2642 |
| BciVI | GTATCC | 1 cut(s) | 667 |
| BclI | TGATCA | 1 cut(s) | 130 |
| BcnI | CCSGG | 1 cut(s) | 2949 |
| BcoDI | GTCTC | 3 cut(s) | 296, 1629, 2937 |
| BfaI | CTAG | 9 cut(s) | 374, 1721, 1769, 2181, 2220, 2313, 2615, 2859, 3074 |
| BfmI | CTRYAG | 6 cut(s) | 870, 1947, 2148, 2798, 3587, 3746 |
| BfuAI | ACCTGC | 2 cut(s) | 2861, 3688 |
| BfuI | GTATCC | 1 cut(s) | 667 |
| BglII | AGATCT | 3 cut(s) | 2816, 2861, 3262 |
| BmcAI | AGTACT | 1 cut(s) | 2923 |
| Bme1390I | CCNGG | 2 cut(s) | 2642, 2949 |
| Bme18I | GGWCC | 3 cut(s) | 2655, 3050, 3131 |
| BmeT110I | CYCGRG | 1 cut(s) | 2820 |
| BmgT120I | GGNCC | 5 cut(s) | 2644, 2655, 3050, 3131, 3933 |
| BmiI | GGNNCC | 2 cut(s) | 426, 2718 |
| BmrFI | CCNGG | 2 cut(s) | 2642, 2949 |
| BpiI | GAAGAC | 2 cut(s) | 2771, 3876 |
| BpmI | CTGGAG | 2 cut(s) | 303, 2757 |
| Bpu10I | CCTNAGC | 4 cut(s) | 2444, 3492, 3765, 3897 |
| BpuEI | CTTGAG | 2 cut(s) | 2919, 3871 |
| BpuMI | CCSGG | 1 cut(s) | 2949 |
| Bsa29I | ATCGAT | 2 cut(s) | 3362, 3689 |
| BsaBI | GATNNNNATC | 3 cut(s) | 153, 1113, 1695 |
| BsaHI | GRCGYC | 1 cut(s) | 3988 |
| BsaI | GGTCTC | 2 cut(s) | 1629, 2937 |
| BsaJI | CCNNGG | 5 cut(s) | 1639, 2459, 2640, 2641, 3381 |
| BsaWI | WCCGGW | 3 cut(s) | 94, 1192, 3160 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 416, 446, 3922, 3952 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1199, 2642, 3865 |
| Bse118I | RCCGGY | 2 cut(s) | 94, 3160 |
| Bse1I | ACTGG | 3 cut(s) | 2540, 2740, 3540 |
| Bse3DI | GCAATG | 4 cut(s) | 89, 242, 3374, 3563 |
| Bse8I | GATNNNNATC | 3 cut(s) | 153, 1113, 1695 |
| BseBI | CCWGG | 1 cut(s) | 2642 |
| BseCI | ATCGAT | 2 cut(s) | 3362, 3689 |
| BseDI | CCNNGG | 5 cut(s) | 1639, 2459, 2640, 2641, 3381 |
| BseGI | GGATG | 6 cut(s) | 146, 196, 2253, 3487, 3544, 3760 |
| BseJI | GATNNNNATC | 3 cut(s) | 153, 1113, 1695 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1199, 2642, 3865 |
| BseMI | GCAATG | 4 cut(s) | 89, 242, 3374, 3563 |
| BseMII | CTCAG | 9 cut(s) | 201, 321, 1542, 2435, 3339, 3483, 3756, 3888, 3960 |
| BseNI | ACTGG | 3 cut(s) | 2540, 2740, 3540 |
| BseRI | GAGGAG | 1 cut(s) | 2163 |
| BseYI | CCCAGC | 2 cut(s) | 2024, 2721 |
| BsgI | GTGCAG | 1 cut(s) | 2303 |
| BshTI | ACCGGT | 2 cut(s) | 94, 3160 |
| BshVI | ATCGAT | 2 cut(s) | 3362, 3689 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3390 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2820 |
| BsiSI | CCGG | 6 cut(s) | 95, 422, 1193, 2420, 2948, 3161 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1199, 2642, 3865 |
| BsmAI | GTCTC | 3 cut(s) | 296, 1629, 2937 |
| Bso31I | GGTCTC | 2 cut(s) | 1629, 2937 |
| BsoBI | CYCGRG | 1 cut(s) | 2820 |
| Bsp1286I | GDGCHC | 1 cut(s) | 3390 |
| Bsp19I | CCATGG | 2 cut(s) | 1639, 2459 |
| BspACI | CCGC | 4 cut(s) | 560, 2653, 3570, 3835 |
| BspCNI | CTCAG | 9 cut(s) | 202, 322, 1543, 2436, 3340, 3484, 3757, 3889, 3959 |
| BspDI | ATCGAT | 2 cut(s) | 3362, 3689 |
| BspHI | TCATGA | 1 cut(s) | 1588 |
| BspLI | GGNNCC | 2 cut(s) | 426, 2718 |
| BspMAI | CTGCAG | 5 cut(s) | 874, 2152, 2802, 3591, 3750 |
| BspMI | ACCTGC | 2 cut(s) | 2861, 3688 |
| BspPI | GGATC | 7 cut(s) | 162, 1273, 2008, 2307, 2531, 2711, 2724 |
| BspQI | GCTCTTC | 2 cut(s) | 660, 756 |
| BspTNI | GGTCTC | 2 cut(s) | 1629, 2937 |
| BsrDI | GCAATG | 4 cut(s) | 89, 242, 3374, 3563 |
| BsrFI | RCCGGY | 2 cut(s) | 94, 3160 |
| BsrI | ACTGG | 3 cut(s) | 2540, 2740, 3540 |
| BssAI | RCCGGY | 2 cut(s) | 94, 3160 |
| BssECI | CCNNGG | 5 cut(s) | 1639, 2459, 2640, 2641, 3381 |
| BssNI | GRCGYC | 1 cut(s) | 3988 |
| BssT1I | CCWWGG | 2 cut(s) | 1639, 2459 |
| Bst2UI | CCWGG | 1 cut(s) | 2642 |
| Bst4CI | ACNGT | 8 cut(s) | 432, 679, 1451, 1685, 1839, 2513, 2604, 3705 |
| Bst6I | CTCTTC | 4 cut(s) | 294, 660, 678, 756 |
| BstACI | GRCGYC | 1 cut(s) | 3988 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2191 |
| BstC8I | GCNNGC | 2 cut(s) | 3570, 3998 |
| BstDSI | CCRYGG | 2 cut(s) | 1639, 2459 |
| BstEII | GGTNACC | 1 cut(s) | 1594 |
| BstF5I | GGATG | 6 cut(s) | 146, 196, 2253, 3487, 3544, 3760 |
| BstHHI | GCGC | 1 cut(s) | 933 |
| BstMAI | GTCTC | 3 cut(s) | 296, 1629, 2937 |
| BstNI | CCWGG | 1 cut(s) | 2642 |
| BstNSI | RCATGY | 4 cut(s) | 26, 516, 912, 3120 |
| BstPI | GGTNACC | 1 cut(s) | 1594 |
| BstSCI | CCNGG | 2 cut(s) | 2640, 2947 |
| BstSFI | CTRYAG | 6 cut(s) | 870, 1947, 2148, 2798, 3587, 3746 |
| BstV2I | GAAGAC | 2 cut(s) | 2771, 3876 |
| BstX2I | RGATCY | 7 cut(s) | 1265, 2299, 2536, 2716, 2816, 2861, 3262 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 596 |
| BstYI | RGATCY | 7 cut(s) | 1265, 2299, 2536, 2716, 2816, 2861, 3262 |
| Bsu15I | ATCGAT | 2 cut(s) | 3362, 3689 |
| BsuI | GTATCC | 1 cut(s) | 667 |
| BsuTUI | ATCGAT | 2 cut(s) | 3362, 3689 |
| BtgI | CCRYGG | 2 cut(s) | 1639, 2459 |
| BtsCI | GGATG | 6 cut(s) | 146, 196, 2253, 3487, 3544, 3760 |
| BtsIMutI | CAGTG | 4 cut(s) | 2733, 3261, 3500, 3954 |
| BveI | ACCTGC | 2 cut(s) | 2861, 3688 |
| Cac8I | GCNNGC | 2 cut(s) | 3570, 3998 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2191, 3502, 3586, 3754 |
| CciI | TCATGA | 1 cut(s) | 1588 |
| CfoI | GCGC | 1 cut(s) | 933 |
| Cfr10I | RCCGGY | 2 cut(s) | 94, 3160 |
| Cfr13I | GGNCC | 5 cut(s) | 2644, 2655, 3050, 3131, 3933 |
| ClaI | ATCGAT | 2 cut(s) | 3362, 3689 |
| CseI | GACGC | 2 cut(s) | 2260, 3977 |
| Csp6I | GTAC | 6 cut(s) | 1142, 1848, 2543, 2922, 3174, 3846 |
| CspAI | ACCGGT | 2 cut(s) | 94, 3160 |
| CviQI | GTAC | 6 cut(s) | 1142, 1848, 2543, 2922, 3174, 3846 |
| DraI | TTTAAA | 1 cut(s) | 3711 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1209 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1209 |
| Eam1104I | CTCTTC | 4 cut(s) | 294, 660, 678, 756 |
| EarI | CTCTTC | 4 cut(s) | 294, 660, 678, 756 |
| Eco130I | CCWWGG | 2 cut(s) | 1639, 2459 |
| Eco147I | AGGCCT | 5 cut(s) | 3426, 3436, 3520, 3622, 3793 |
| Eco31I | GGTCTC | 2 cut(s) | 1629, 2937 |
| Eco32I | GATATC | 2 cut(s) | 1697, 1765 |
| Eco47I | GGWCC | 3 cut(s) | 2655, 3050, 3131 |
| Eco88I | CYCGRG | 1 cut(s) | 2820 |
| Eco91I | GGTNACC | 1 cut(s) | 1594 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3933 |
| EcoO65I | GGTNACC | 1 cut(s) | 1594 |
| EcoRII | CCWGG | 1 cut(s) | 2640 |
| EcoRV | GATATC | 2 cut(s) | 1697, 1765 |
| EcoT14I | CCWWGG | 2 cut(s) | 1639, 2459 |
| ErhI | CCWWGG | 2 cut(s) | 1639, 2459 |
| FauI | CCCGC | 1 cut(s) | 3577 |
| FauNDI | CATATG | 1 cut(s) | 3309 |
| FbaI | TGATCA | 1 cut(s) | 130 |
| FokI | GGATG | 6 cut(s) | 153, 203, 2260, 3474, 3551, 3747 |
| FspBI | CTAG | 9 cut(s) | 374, 1721, 1769, 2181, 2220, 2313, 2615, 2859, 3074 |
| FspI | TGCGCA | 1 cut(s) | 932 |
| GlaI | GCGC | 1 cut(s) | 932 |
| GsaI | CCCAGC | 2 cut(s) | 2028, 2725 |
| GsuI | CTGGAG | 2 cut(s) | 303, 2757 |
| HapII | CCGG | 6 cut(s) | 95, 422, 1193, 2420, 2948, 3161 |
| HgaI | GACGC | 2 cut(s) | 2260, 3977 |
| HhaI | GCGC | 1 cut(s) | 933 |
| Hin1I | GRCGYC | 1 cut(s) | 3988 |
| Hin6I | GCGC | 1 cut(s) | 931 |
| HinP1I | GCGC | 1 cut(s) | 931 |
| HincII | GTYRAC | 2 cut(s) | 3191, 3444 |
| HindII | GTYRAC | 2 cut(s) | 3191, 3444 |
| HinfI | GANTC | 8 cut(s) | 181, 2381, 2480, 2666, 2710, 3718, 3805, 3973 |
| HpaII | CCGG | 6 cut(s) | 95, 422, 1193, 2420, 2948, 3161 |
| Hpy99I | CGWCG | 1 cut(s) | 3927 |
| HpyCH4III | ACNGT | 8 cut(s) | 432, 679, 1451, 1685, 1839, 2513, 2604, 3705 |
| HpyCH4IV | ACGT | 1 cut(s) | 3319 |
| HpySE526I | ACGT | 1 cut(s) | 3319 |
| Hsp92I | GRCGYC | 1 cut(s) | 3988 |
| HspAI | GCGC | 1 cut(s) | 931 |
| Ksp22I | TGATCA | 1 cut(s) | 130 |
| LguI | GCTCTTC | 2 cut(s) | 660, 756 |
| LmnI | GCTCC | 5 cut(s) | 352, 424, 2521, 3385, 3688 |
| MaeI | CTAG | 9 cut(s) | 374, 1721, 1769, 2181, 2220, 2313, 2615, 2859, 3074 |
| MaeII | ACGT | 1 cut(s) | 3319 |
| MfeI | CAATTG | 1 cut(s) | 2373 |
| MflI | RGATCY | 7 cut(s) | 1265, 2299, 2536, 2716, 2816, 2861, 3262 |
| MhlI | GDGCHC | 1 cut(s) | 3390 |
| MlyI | GAGTC | 1 cut(s) | 3982 |
| MmeI | TCCRAC | 2 cut(s) | 2277, 3612 |
| MroXI | GAANNNNTTC | 8 cut(s) | 96, 369, 576, 753, 1131, 1221, 1434, 3264 |
| MseI | TTAA | 9 cut(s) | 257, 954, 1893, 2006, 2019, 2163, 2321, 2729, 3710 |
| MslI | CAYNNNNRTG | 3 cut(s) | 3393, 3465, 3947 |
| MspA1I | CMGCKG | 4 cut(s) | 2443, 2797, 3301, 3883 |
| MspI | CCGG | 6 cut(s) | 95, 422, 1193, 2420, 2948, 3161 |
| MspR9I | CCNGG | 2 cut(s) | 2642, 2949 |
| MunI | CAATTG | 1 cut(s) | 2373 |
| MvaI | CCWGG | 1 cut(s) | 2642 |
| NciI | CCSGG | 1 cut(s) | 2949 |
| NcoI | CCATGG | 2 cut(s) | 1639, 2459 |
| NdeI | CATATG | 1 cut(s) | 3309 |
| NlaIV | GGNNCC | 2 cut(s) | 426, 2718 |
| NmuCI | GTSAC | 8 cut(s) | 325, 697, 1087, 1177, 1369, 1594, 1867, 2604 |
| NsbI | TGCGCA | 1 cut(s) | 932 |
| NspI | RCATGY | 4 cut(s) | 26, 516, 912, 3120 |
| PaeR7I | CTCGAG | 1 cut(s) | 2820 |
| PagI | TCATGA | 1 cut(s) | 1588 |
| PasI | CCCWGGG | 1 cut(s) | 2641 |
| PceI | AGGCCT | 5 cut(s) | 3426, 3436, 3520, 3622, 3793 |
| PciI | ACATGT | 3 cut(s) | 22, 512, 908 |
| PciSI | GCTCTTC | 2 cut(s) | 660, 756 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3919 |
| PdmI | GAANNNNTTC | 8 cut(s) | 96, 369, 576, 753, 1131, 1221, 1434, 3264 |
| PfeI | GAWTC | 7 cut(s) | 181, 2381, 2480, 2666, 2710, 3718, 3805 |
| PinAI | ACCGGT | 2 cut(s) | 94, 3160 |
| PleI | GAGTC | 1 cut(s) | 3981 |
| PpsI | GAGTC | 1 cut(s) | 3981 |
| PscI | ACATGT | 3 cut(s) | 22, 512, 908 |
| Psp6I | CCWGG | 1 cut(s) | 2640 |
| PspEI | GGTNACC | 1 cut(s) | 1594 |
| PspFI | CCCAGC | 2 cut(s) | 2024, 2721 |
| PspGI | CCWGG | 1 cut(s) | 2640 |
| PspN4I | GGNNCC | 2 cut(s) | 426, 2718 |
| PspPI | GGNCC | 5 cut(s) | 2644, 2655, 3050, 3131, 3933 |
| PstI | CTGCAG | 5 cut(s) | 874, 2152, 2802, 3591, 3750 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2191, 3502, 3586, 3754 |
| PsuI | RGATCY | 7 cut(s) | 1265, 2299, 2536, 2716, 2816, 2861, 3262 |
| PvuII | CAGCTG | 4 cut(s) | 2443, 2797, 3301, 3883 |
| RsaI | GTAC | 6 cut(s) | 1143, 1849, 2544, 2923, 3175, 3847 |
| RsaNI | GTAC | 6 cut(s) | 1142, 1848, 2543, 2922, 3174, 3846 |
| RseI | CAYNNNNRTG | 3 cut(s) | 3393, 3465, 3947 |
| SapI | GCTCTTC | 2 cut(s) | 660, 756 |
| SaqAI | TTAA | 9 cut(s) | 257, 954, 1893, 2006, 2019, 2163, 2321, 2729, 3710 |
| Sau96I | GGNCC | 5 cut(s) | 2644, 2655, 3050, 3131, 3933 |
| ScaI | AGTACT | 1 cut(s) | 2923 |
| SchI | GAGTC | 1 cut(s) | 3982 |
| ScrFI | CCNGG | 2 cut(s) | 2642, 2949 |
| SduI | GDGCHC | 1 cut(s) | 3390 |
| SfcI | CTRYAG | 6 cut(s) | 870, 1947, 2148, 2798, 3587, 3746 |
| Sfr274I | CTCGAG | 1 cut(s) | 2820 |
| SinI | GGWCC | 3 cut(s) | 2655, 3050, 3131 |
| SlaI | CTCGAG | 1 cut(s) | 2820 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 3393, 3465, 3947 |
| SmlI | CTYRAG | 3 cut(s) | 2820, 2934, 3850 |
| SmoI | CTYRAG | 3 cut(s) | 2820, 2934, 3850 |
| SseBI | AGGCCT | 5 cut(s) | 3426, 3436, 3520, 3622, 3793 |
| SsiI | CCGC | 4 cut(s) | 560, 2653, 3570, 3835 |
| SspI | AATATT | 1 cut(s) | 952 |
| SspMI | CTAG | 9 cut(s) | 374, 1721, 1769, 2181, 2220, 2313, 2615, 2859, 3074 |
| StuI | AGGCCT | 5 cut(s) | 3426, 3436, 3520, 3622, 3793 |
| StyD4I | CCNGG | 2 cut(s) | 2640, 2947 |
| StyI | CCWWGG | 2 cut(s) | 1639, 2459 |
| TaaI | ACNGT | 8 cut(s) | 432, 679, 1451, 1685, 1839, 2513, 2604, 3705 |
| TaiI | ACGT | 1 cut(s) | 3322 |
| TaqI | TCGA | 9 cut(s) | 88, 100, 361, 2498, 2821, 2972, 3362, 3689, 3796 |
| TaqII | GACCGA | 1 cut(s) | 1106 |
| TatI | WGTACW | 4 cut(s) | 1847, 2542, 2921, 3173 |
| TauI | GCSGC | 2 cut(s) | 562, 3837 |
| TfiI | GAWTC | 7 cut(s) | 181, 2381, 2480, 2666, 2710, 3718, 3805 |
| Tru1I | TTAA | 9 cut(s) | 257, 954, 1893, 2006, 2019, 2163, 2321, 2729, 3710 |
| Tru9I | TTAA | 9 cut(s) | 257, 954, 1893, 2006, 2019, 2163, 2321, 2729, 3710 |
| TscAI | CASTG | 4 cut(s) | 2740, 3261, 3507, 3954 |
| TseFI | GTSAC | 8 cut(s) | 325, 697, 1087, 1177, 1369, 1594, 1867, 2604 |
| Tsp45I | GTSAC | 8 cut(s) | 325, 697, 1087, 1177, 1369, 1594, 1867, 2604 |
| TspGWI | ACGGA | 1 cut(s) | 3445 |
| TspRI | CASTG | 4 cut(s) | 2740, 3261, 3507, 3954 |
| VpaK11BI | GGWCC | 3 cut(s) | 2655, 3050, 3131 |
| XapI | RAATTY | 5 cut(s) | 749, 1325, 1902, 2829, 2959 |
| XbaI | TCTAGA | 1 cut(s) | 373 |
| XceI | RCATGY | 4 cut(s) | 26, 516, 912, 3120 |
| XhoI | CTCGAG | 1 cut(s) | 2820 |
| XmnI | GAANNNNTTC | 8 cut(s) | 96, 369, 576, 753, 1131, 1221, 1434, 3264 |
| XspI | CTAG | 9 cut(s) | 374, 1721, 1769, 2181, 2220, 2313, 2615, 2859, 3074 |
| ZrmI | AGTACT | 1 cut(s) | 2923 |