Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8257597.1

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 637

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8257597.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggcaggttcatcaccctcacagcctctttatgagcagtatcagttgatttcaagtactgcaaggtctcaagtggaaaagccgggaatagaaaattcatctcaatcgaagaagcaaccagcaaatcactctaatcggcgaaagcggggaacaccagagcctacaacaatgccaaatgccattggtccaatcctcccttgcaagaaactagcgttaggctgtcagaatgtagaacttcccactcctgaagcatgtgaagatgtaggaccaacaatcatggacaagtcatctcaaccggtggtgcaaagtacagatcatcatggtcaacaaaagatgttgaaatccaagccaacaacaatggcagaaagttcacagctcaattcagcatcagtggaagatcttcctcaaacagcaaaagagctgcaacagaagcagctgtgccatatgaacttacgttcacgcagccaagctgcatcacaatctgagcttgttgtatcgatggcacaatcattgccctcggagcaccattatgagcagccacaagaaatgaagcatcaaggcctacggaggcctaagttgacttcacacaatcagcataatggtgaacttcagcttccaaaacatcctgagcagcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

212

Amino Acids

23.45

Weight (kDa)

8.66

Isoelectric Point (pI)

89.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	2 cut(s)	267, 593
AfaI	GTAC	2 cut(s)	58, 310
AgeI	ACCGGT	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	54, 340
AluBI	AGCT	6 cut(s)	376, 421, 436, 470, 487, 613
AluI	AGCT	6 cut(s)	376, 421, 436, 470, 487, 613
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	2 cut(s)	559, 569
ApeKI	GCWGC	6 cut(s)	421, 433, 462, 470, 535, 631
ApoI	RAATTY	1 cut(s)	94
AsiGI	ACCGGT	1 cut(s)	295
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	185, 266
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	6, 614
AvaII	GGWCC	2 cut(s)	185, 266
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	5 cut(s)	408, 445, 457, 474, 547
BccI	CCATC	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	209
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	6 cut(s)	422, 434, 463, 471, 536, 632
BlsI	GCNGC	6 cut(s)	423, 435, 464, 472, 537, 633
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	185, 266
BmgT120I	GGNCC	2 cut(s)	185, 266
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	3 cut(s)	395, 482, 562
Bpu10I	CCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	84
Bsa29I	ATCGAT	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	295
Bse118I	RCCGGY	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	1 cut(s)	622
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	2 cut(s)	474, 618
BseXI	GCAGC	5 cut(s)	408, 445, 457, 474, 547
BshFI	GGCC	2 cut(s)	561, 571
BshTI	ACCGGT	1 cut(s)	295
BshVI	ATCGAT	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	525
BsiSI	CCGG	2 cut(s)	83, 296
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	561, 571
Bso31I	GGTCTC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	2 cut(s)	313, 397
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	2 cut(s)	561, 571
BspCNI	CTCAG	2 cut(s)	475, 619
BspDI	ATCGAT	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	509
BsrFI	RCCGGY	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	2 cut(s)	313, 397
BstDEI	CTNAG	3 cut(s)	483, 573, 627
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	2 cut(s)	316, 400
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	313, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	430, 520
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	5 cut(s)	408, 445, 457, 474, 547
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	561, 571
BsuTUI	ATCGAT	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	185, 266
ClaI	ATCGAT	1 cut(s)	497
Csp6I	GTAC	2 cut(s)	57, 309
CspAI	ACCGGT	1 cut(s)	295
CviAII	CATG	3 cut(s)	252, 277, 320
CviQI	GTAC	2 cut(s)	57, 309
DdeI	CTNAG	3 cut(s)	483, 573, 627
DpnI	GATC	2 cut(s)	315, 399
DpnII	GATC	2 cut(s)	313, 397
Eco147I	AGGCCT	2 cut(s)	561, 571
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	185, 266
Eco57I	CTGAAG	2 cut(s)	267, 593
FaeI	CATG	3 cut(s)	255, 280, 323
FaiI	YATR	8 cut(s)	33, 253, 278, 321, 444, 446, 531, 597
FatI	CATG	3 cut(s)	251, 276, 319
FauI	CCCGC	1 cut(s)	138
FauNDI	CATATG	1 cut(s)	444
Fnu4HI	GCNGC	6 cut(s)	422, 434, 463, 471, 536, 632
FokI	GGATG	1 cut(s)	609
Fsp4HI	GCNGC	6 cut(s)	422, 434, 463, 471, 536, 632
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	6 cut(s)	422, 434, 463, 471, 536, 632
HaeIII	GGCC	2 cut(s)	561, 571
HapII	CCGG	2 cut(s)	83, 296
Hin1II	CATG	3 cut(s)	255, 280, 323
HincII	GTYRAC	2 cut(s)	326, 579
HindII	GTYRAC	2 cut(s)	326, 579
HpaII	CCGG	2 cut(s)	83, 296
HphI	GGTGA	2 cut(s)	6, 614
Hpy166II	GTNNAC	5 cut(s)	326, 371, 458, 579, 605
Hpy188I	TCNGA	3 cut(s)	225, 484, 520
Hpy188III	TCNNGA	2 cut(s)	245, 626
Hpy8I	GTNNAC	5 cut(s)	326, 371, 458, 579, 605
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	5 cut(s)	62, 201, 304, 424, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	430, 520
HpyF3I	CTNAG	3 cut(s)	483, 573, 627
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	3 cut(s)	255, 280, 323
Kzo9I	GATC	2 cut(s)	313, 397
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	5 cut(s)	96, 132, 168, 258, 309
Lsp1109I	GCAGC	5 cut(s)	408, 445, 457, 474, 547
LweI	GCATC	3 cut(s)	395, 482, 562
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	454
MalI	GATC	2 cut(s)	315, 399
MboI	GATC	2 cut(s)	313, 397
MboII	GAAGA	4 cut(s)	121, 269, 392, 407
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	2 cut(s)	94, 379
MnlI	CCTC	6 cut(s)	28, 36, 203, 414, 526, 561
MroXI	GAANNNNTTC	1 cut(s)	399
MslI	CAYNNNNRTG	2 cut(s)	528, 600
MspA1I	CMGCKG	1 cut(s)	436
MspI	CCGG	2 cut(s)	83, 296
MspR9I	CCNGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	430, 520
NciI	CCSGG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	444
NdeII	GATC	2 cut(s)	313, 397
NlaIII	CATG	3 cut(s)	255, 280, 323
NspI	RCATGY	1 cut(s)	255
PceI	AGGCCT	2 cut(s)	561, 571
PdmI	GAANNNNTTC	1 cut(s)	399
PinAI	ACCGGT	1 cut(s)	295
PkrI	GCNGC	6 cut(s)	423, 435, 464, 472, 537, 633
PspPI	GGNCC	2 cut(s)	185, 266
PsuI	RGATCY	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	436
RsaI	GTAC	2 cut(s)	58, 310
RsaNI	GTAC	2 cut(s)	57, 309
RseI	CAYNNNNRTG	2 cut(s)	528, 600
SatI	GCNGC	6 cut(s)	422, 434, 463, 471, 536, 632
Sau3AI	GATC	2 cut(s)	313, 397
Sau96I	GGNCC	2 cut(s)	185, 266
ScaI	AGTACT	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	525
SetI	ASST	9 cut(s)	10, 68, 378, 423, 438, 457, 472, 489, 615
SfaNI	GCATC	3 cut(s)	395, 482, 562
SinI	GGWCC	2 cut(s)	185, 266
SmiMI	CAYNNNNRTG	2 cut(s)	528, 600
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	94, 379
SseBI	AGGCCT	2 cut(s)	561, 571
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	209
StuI	AGGCCT	2 cut(s)	561, 571
StyD4I	CCNGG	1 cut(s)	82
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	2 cut(s)	107, 497
TasI	AATT	2 cut(s)	94, 379
TatI	WGTACW	2 cut(s)	56, 308
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	6 cut(s)	421, 433, 462, 470, 535, 631
TspDTI	ATGAA	3 cut(s)	87, 461, 563
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	1 cut(s)	396
VpaK11BI	GGWCC	2 cut(s)	185, 266
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.