Rroxscaffold_3G00251710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000827
Physical Location & Seq
Reverse (-)
45650260 .. 45650654
395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251710.1

Sequence Viewer

Length: 357 bp
ATGTCTGCGGAAGTAGTTGAACATGTAAAATTAGCCGAAGAACGAGATGAAGTGAGTGAAAAAGAGAAAGAACCGGTTCGAGAAAATGAGCAGAGTAAGGTCATTGATGATCAGAATGGATGTCCTGTTGAGGAGATTGCAGTGATTGACCTGACTGACCAAAAGCTACAACTTGGGAAGCAATGTCAAGAAAATGGTTCTCCAATCACAACATCTTTCTGCTCATCCGGAGAAGGGAAATGGGAAGAGACTGAAGAACAACAAGTTGAAAATGTTGTAGTACAGAAATATGGAGTGACCGAACAACAGAGAGAAGATGGGCATCAAAGTCAAGAACCAATTCAAGAGGTACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.37

Weight (kDa)

4.28

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 227
AciI CCGC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 2 cut(s) 282, 351
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 22
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 3 cut(s) 20, 269, 344
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 227
AsiGI ACCGGT 1 cut(s) 73
Asp700I GAANNNNTTC 2 cut(s) 75, 339
BccI CCATC 1 cut(s) 311
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 242
BmsI GCATC 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 321
BsaWI WCCGGW 2 cut(s) 73, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 321
BseAI TCCGGA 1 cut(s) 227
BseGI GGATG 2 cut(s) 125, 224
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 146
BshTI ACCGGT 1 cut(s) 73
BsiSI CCGG 2 cut(s) 74, 228
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 242
Bsp13I TCCGGA 1 cut(s) 227
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 8
BspEI TCCGGA 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 73
BssMI GATC 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 240
BstF5I GGATG 2 cut(s) 125, 224
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 26
BtsCI GGATG 2 cut(s) 125, 224
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 73
Csp6I GTAC 2 cut(s) 281, 350
CspAI ACCGGT 1 cut(s) 73
CviAII CATG 1 cut(s) 23
CviJI RGCY 2 cut(s) 35, 166
CviKI_1 RGCY 2 cut(s) 35, 166
CviQI GTAC 2 cut(s) 281, 350
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 273
FaeI CATG 1 cut(s) 26
FaiI YATR 2 cut(s) 24, 291
FatI CATG 1 cut(s) 22
FbaI TGATCA 1 cut(s) 109
FokI GGATG 2 cut(s) 132, 211
HapII CCGG 2 cut(s) 74, 228
Hin1II CATG 1 cut(s) 26
HpaII CCGG 2 cut(s) 74, 228
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 5 cut(s) 80, 188, 228, 332, 344
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4V TGCA 1 cut(s) 140
Hsp92II CATG 1 cut(s) 26
Kpn2I TCCGGA 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 4 cut(s) 87, 138, 164, 241
LweI GCATC 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 4 cut(s) 50, 257, 266, 326
MluCI AATT 2 cut(s) 29, 339
MnlI CCTC 2 cut(s) 124, 340
MroI TCCGGA 1 cut(s) 227
MroXI GAANNNNTTC 2 cut(s) 75, 339
MspI CCGG 2 cut(s) 74, 228
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 26
PciI ACATGT 1 cut(s) 22
PdmI GAANNNNTTC 2 cut(s) 75, 339
PinAI ACCGGT 1 cut(s) 73
PscI ACATGT 1 cut(s) 22
RsaI GTAC 2 cut(s) 282, 351
RsaNI GTAC 2 cut(s) 281, 350
Sau3AI GATC 1 cut(s) 109
SetI ASST 4 cut(s) 102, 153, 168, 351
SfaNI GCATC 1 cut(s) 331
Sse9I AATT 2 cut(s) 29, 339
SsiI CCGC 1 cut(s) 8
TaaI ACNGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 79
TaqII GACCGA 1 cut(s) 314
TasI AATT 2 cut(s) 29, 339
TatI WGTACW 1 cut(s) 280
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 1 cut(s) 147
XceI RCATGY 1 cut(s) 26
XmnI GAANNNNTTC 2 cut(s) 75, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.