Rroxscaffold_3G00251800

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000827
Physical Location & Seq
Reverse (-)
45773563 .. 45774837
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251800.1

Sequence Viewer

Length: 915 bp
ATGATTGAAGATAAATATGGCTCTACAGATGCGCAGCAAGAGAGAGTGAATGGACATGAAAATCAGAAACATATGCAACAAGTTGCGTTGATTGTTGATAAGCAGAATGTTGAAGTCAAGAAGTATCAAGTGAATGAAGAGCAAGTTGAAGTGATTGAACAAAAGACAGAACATGTGAAGCAAAGTGTAGAACCAATACAGCACATGAAGGTGATTGATTGTCAAAATGGATCTTCAAAGCAACAAAATGAACAGAAAGATGAAGTGAATAGACAGCAAAGTGAAAATCAAATCCAAGTAACTGCAGTGGTTGTTGAAAAGTCTAATATTTCAGAACAGACACGTAATGTGAATGAAGAAGAACAAGTTGAAGTGACTGCACAGAGAGAATATGGGCAGCAAAGTCAAGTAGCTAGTCAAGAAGAGCAACATAACAAGATTGACACAAAATTGAAACACAAAGTGGCTGTTGAGCGTATTGAATACCAAACTAAAGAACAATTGTGTGAAGTGATTGAACAACATAGTCAAGCTGTCAAAAGAGATATACAGTTACATGGAGAAGCAGTTGAAGCAATTCGGTCTGGACCAGAGGCACAGCAAAGTGATATGATTTCAGAACAAAATAGACCGCAAGACCAAATTGAATTAACAAGTATGCAGGAGTTATTGTCTAAGAAGCAAGAGAAAGATGTGGCTACTGTAGTCAATTCAAATATTTCTATTGCAAGTCAGAAATTCTTCCAACATGTTTCGTTAAACTTGTCTGAGGTGCTGGAAAACAACGTTAAGGTGCAGGGAAAGATGCAGAAACTGCTGCAAAATGACATTAAGGTGCAGGAAAAGACACATAAGCTGCTGGAAAATAACATTAAGGTGCAGGAAAAGACACTTCAGCTTGCATTTCAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

304

Amino Acids

35.08

Weight (kDa)

5.35

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 33
AciI CCGC 1 cut(s) 632
AclI AACGTT 1 cut(s) 786
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 737
AcuI CTGAAG 1 cut(s) 878
AdeI CACNNNGTG 1 cut(s) 463
AflIII ACRYGT 3 cut(s) 172, 341, 748
AluBI AGCT 4 cut(s) 413, 533, 856, 898
AluI AGCT 4 cut(s) 413, 533, 856, 898
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 814
ApeKI GCWGC 4 cut(s) 34, 397, 817, 856
ApoI RAATTY 1 cut(s) 737
Asp700I GAANNNNTTC 2 cut(s) 576, 740
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 587
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 587
BbvI GCAGC 4 cut(s) 46, 409, 804, 843
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 3 cut(s) 24, 303, 702
BisI GCNGC 4 cut(s) 35, 398, 818, 857
BlsI GCNGC 4 cut(s) 36, 399, 819, 858
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 587
BmsI GCATC 2 cut(s) 19, 795
BsaAI YACGTR 1 cut(s) 344
BsaXI ACNNNNNCTCC 4 cut(s) 552, 582, 656, 686
BseMII CTCAG 1 cut(s) 759
BseXI GCAGC 4 cut(s) 46, 409, 804, 843
BsgI GTGCAG 4 cut(s) 363, 815, 857, 899
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 1 cut(s) 632
BspCNI CTCAG 1 cut(s) 760
BspMAI CTGCAG 1 cut(s) 307
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 2 cut(s) 132, 417
BssMI GATC 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 552, 703
Bst6I CTCTTC 2 cut(s) 132, 417
BstAPI GCANNNNNTGC 1 cut(s) 814
BstBAI YACGTR 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 900
BstDEI CTNAG 2 cut(s) 675, 768
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 233
BstMBI GATC 1 cut(s) 230
BstMWI GCNNNNNNNGC 2 cut(s) 572, 814
BstNSI RCATGY 2 cut(s) 176, 752
BstSFI CTRYAG 3 cut(s) 24, 303, 702
BstV1I GCAGC 4 cut(s) 46, 409, 804, 843
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 900
CaiI CAGNNNCTG 1 cut(s) 814
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 587
CviAII CATG 5 cut(s) 56, 173, 205, 557, 749
CviJI RGCY 7 cut(s) 21, 413, 467, 533, 698, 856, 898
CviKI_1 RGCY 7 cut(s) 21, 413, 467, 533, 698, 856, 898
DdeI CTNAG 2 cut(s) 675, 768
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
DraIII CACNNNGTG 1 cut(s) 463
Eam1104I CTCTTC 2 cut(s) 132, 417
EarI CTCTTC 2 cut(s) 132, 417
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 878
FaeI CATG 5 cut(s) 59, 176, 208, 560, 752
FatI CATG 5 cut(s) 55, 172, 204, 556, 748
FauNDI CATATG 1 cut(s) 72
Fnu4HI GCNGC 4 cut(s) 35, 398, 818, 857
Fsp4HI GCNGC 4 cut(s) 35, 398, 818, 857
FspBI CTAG 1 cut(s) 414
FspI TGCGCA 1 cut(s) 33
GlaI GCGC 1 cut(s) 33
GluI GCNGC 4 cut(s) 35, 398, 818, 857
HhaI GCGC 1 cut(s) 34
Hin1II CATG 5 cut(s) 59, 176, 208, 560, 752
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 5 cut(s) 66, 334, 619, 735, 769
Hpy188III TCNNGA 3 cut(s) 118, 419, 585
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 2 cut(s) 552, 703
HpyCH4IV ACGT 2 cut(s) 343, 786
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 814
HpyF3I CTNAG 2 cut(s) 675, 768
HpySE526I ACGT 2 cut(s) 343, 786
Hsp92II CATG 5 cut(s) 59, 176, 208, 560, 752
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 230
LguI GCTCTTC 2 cut(s) 132, 417
LpnPI CCDG 8 cut(s) 570, 603, 647, 761, 782, 824, 845, 866
Lsp1109I GCAGC 4 cut(s) 46, 409, 804, 843
LweI GCATC 2 cut(s) 19, 795
MaeI CTAG 1 cut(s) 414
MaeII ACGT 2 cut(s) 343, 786
MaeIII GTNAC 3 cut(s) 298, 373, 552
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 7 cut(s) 20, 149, 225, 368, 371, 434, 733
MfeI CAATTG 1 cut(s) 500
MflI RGATCY 1 cut(s) 230
MluCI AATT 7 cut(s) 449, 500, 576, 642, 647, 709, 737
MmeI TCCRAC 1 cut(s) 769
MnlI CCTC 2 cut(s) 586, 763
MroXI GAANNNNTTC 2 cut(s) 576, 740
MseI TTAA 6 cut(s) 650, 758, 789, 831, 873, 913
MslI CAYNNNNRTG 3 cut(s) 209, 833, 875
MunI CAATTG 1 cut(s) 500
MwoI GCNNNNNNNGC 2 cut(s) 572, 814
NdeI CATATG 1 cut(s) 72
NdeII GATC 1 cut(s) 230
NlaIII CATG 5 cut(s) 59, 176, 208, 560, 752
NmuCI GTSAC 1 cut(s) 373
NsbI TGCGCA 1 cut(s) 33
NspI RCATGY 2 cut(s) 176, 752
PciI ACATGT 2 cut(s) 172, 748
PciSI GCTCTTC 2 cut(s) 132, 417
PdmI GAANNNNTTC 2 cut(s) 576, 740
PkrI GCNGC 4 cut(s) 36, 399, 819, 858
Ppu21I YACGTR 1 cut(s) 344
PscI ACATGT 2 cut(s) 172, 748
Psp1406I AACGTT 1 cut(s) 786
PspPI GGNCC 1 cut(s) 587
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 814
PsuI RGATCY 1 cut(s) 230
RseI CAYNNNNRTG 3 cut(s) 209, 833, 875
SapI GCTCTTC 2 cut(s) 132, 417
SaqAI TTAA 6 cut(s) 650, 758, 789, 831, 873, 913
SatI GCNGC 4 cut(s) 35, 398, 818, 857
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 587
SfaNI GCATC 2 cut(s) 19, 795
SfcI CTRYAG 3 cut(s) 24, 303, 702
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 3 cut(s) 209, 833, 875
Sse9I AATT 7 cut(s) 449, 500, 576, 642, 647, 709, 737
SsiI CCGC 1 cut(s) 632
SspI AATATT 2 cut(s) 328, 718
SspMI CTAG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 552, 703
TaiI ACGT 2 cut(s) 346, 789
TaqII GACCGA 1 cut(s) 570
TasI AATT 7 cut(s) 449, 500, 576, 642, 647, 709, 737
Tru1I TTAA 6 cut(s) 650, 758, 789, 831, 873, 913
Tru9I TTAA 6 cut(s) 650, 758, 789, 831, 873, 913
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 4 cut(s) 34, 397, 817, 856
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 6 cut(s) 72, 150, 221, 264, 276, 369
TspRI CASTG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 737
XceI RCATGY 2 cut(s) 176, 752
XmnI GAANNNNTTC 2 cut(s) 576, 740
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.