Domain in histone families 1 and 5
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Linker_histone | PF00538 | 11 - 68 | 9.5e-08 | linker histone H1 and H5 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 831 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1904 |
| AciI | CCGC | 5 cut(s) | 5, 15, 1391, 1586, 1911 |
| AclWI | GGATC | 4 cut(s) | 601, 1036, 1288, 1332 |
| AcsI | RAATTY | 5 cut(s) | 101, 537, 642, 762, 1691 |
| AcuI | CTGAAG | 3 cut(s) | 105, 507, 1799 |
| AdeI | CACNNNGTG | 1 cut(s) | 1387 |
| AfaI | GTAC | 4 cut(s) | 441, 615, 720, 1439 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1904 |
| AflIII | ACRYGT | 2 cut(s) | 970, 1139 |
| AjnI | CCWGG | 1 cut(s) | 664 |
| AluBI | AGCT | 9 cut(s) | 172, 311, 434, 1211, 1487, 1652, 1741, 1783, 1954 |
| AluI | AGCT | 9 cut(s) | 172, 311, 434, 1211, 1487, 1652, 1741, 1783, 1954 |
| Alw21I | GWGCWC | 1 cut(s) | 436 |
| AlwI | GGATC | 4 cut(s) | 601, 1036, 1288, 1332 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1655, 1741 |
| Ama87I | CYCGRG | 1 cut(s) | 1994 |
| ApeKI | GCWGC | 8 cut(s) | 520, 523, 532, 832, 1195, 1649, 1741, 1783 |
| ApoI | RAATTY | 5 cut(s) | 101, 537, 642, 762, 1691 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 549, 1530 |
| AspLEI | GCGC | 1 cut(s) | 832 |
| AspS9I | GGNCC | 1 cut(s) | 1541 |
| AsuHPI | GGTGA | 4 cut(s) | 248, 1021, 1249, 1816 |
| AsuII | TTCGAA | 1 cut(s) | 1867 |
| AvaI | CYCGRG | 1 cut(s) | 1994 |
| AvaII | GGWCC | 1 cut(s) | 1541 |
| BanII | GRGCYC | 1 cut(s) | 436 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 597, 629, 702, 734 |
| BbsI | GAAGAC | 4 cut(s) | 149, 284, 756, 1814 |
| Bbv12I | GWGCWC | 1 cut(s) | 436 |
| BbvI | GCAGC | 8 cut(s) | 532, 535, 544, 844, 1207, 1661, 1728, 1770 |
| BciT130I | CCWGG | 1 cut(s) | 666 |
| BfaI | CTAG | 4 cut(s) | 249, 1212, 1629, 2023 |
| BfmI | CTRYAG | 2 cut(s) | 822, 1656 |
| BisI | GCNGC | 9 cut(s) | 6, 521, 524, 533, 833, 1196, 1650, 1742, 1784 |
| BlsI | GCNGC | 9 cut(s) | 7, 522, 525, 534, 834, 1197, 1651, 1743, 1785 |
| Bme1390I | CCNGG | 1 cut(s) | 666 |
| Bme18I | GGWCC | 1 cut(s) | 1541 |
| BmeT110I | CYCGRG | 1 cut(s) | 1994 |
| BmgT120I | GGNCC | 1 cut(s) | 1541 |
| BmrFI | CCNGG | 1 cut(s) | 666 |
| BmsI | GCATC | 3 cut(s) | 817, 1636, 1722 |
| BpiI | GAAGAC | 4 cut(s) | 149, 284, 756, 1814 |
| BpmI | CTGGAG | 5 cut(s) | 420, 450, 582, 687, 1269 |
| Bpu14I | TTCGAA | 1 cut(s) | 1867 |
| BpuEI | CTTGAG | 1 cut(s) | 172 |
| BsaAI | YACGTR | 2 cut(s) | 443, 1142 |
| BsaBI | GATNNNNATC | 1 cut(s) | 25 |
| BsaJI | CCNNGG | 1 cut(s) | 979 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1904 |
| Bse1I | ACTGG | 2 cut(s) | 433, 437 |
| Bse8I | GATNNNNATC | 1 cut(s) | 25 |
| BseBI | CCWGG | 1 cut(s) | 666 |
| BseDI | CCNNGG | 1 cut(s) | 979 |
| BseGI | GGATG | 2 cut(s) | 42, 1399 |
| BseJI | GATNNNNATC | 1 cut(s) | 25 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1904 |
| BseMII | CTCAG | 3 cut(s) | 351, 734, 1713 |
| BseNI | ACTGG | 2 cut(s) | 433, 437 |
| BseRI | GAGGAG | 1 cut(s) | 71 |
| BseXI | GCAGC | 8 cut(s) | 532, 535, 544, 844, 1207, 1661, 1728, 1770 |
| BseYI | CCCAGC | 1 cut(s) | 32 |
| BsgI | GTGCAG | 2 cut(s) | 1005, 1784 |
| BsiHKAI | GWGCWC | 1 cut(s) | 436 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1994 |
| BslFI | GGGAC | 2 cut(s) | 248, 467 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1904 |
| BsmFI | GGGAC | 2 cut(s) | 248, 467 |
| BsoBI | CYCGRG | 1 cut(s) | 1994 |
| Bsp119I | TTCGAA | 1 cut(s) | 1867 |
| Bsp1286I | GDGCHC | 1 cut(s) | 436 |
| Bsp1407I | TGTACA | 1 cut(s) | 613 |
| Bsp143I | GATC | 4 cut(s) | 593, 1028, 1280, 1324 |
| BspACI | CCGC | 5 cut(s) | 5, 15, 1391, 1586, 1911 |
| BspCNI | CTCAG | 3 cut(s) | 352, 735, 1714 |
| BspPI | GGATC | 4 cut(s) | 601, 1036, 1288, 1332 |
| BspQI | GCTCTTC | 2 cut(s) | 930, 1215 |
| BspT104I | TTCGAA | 1 cut(s) | 1867 |
| BsrGI | TGTACA | 1 cut(s) | 613 |
| BsrI | ACTGG | 2 cut(s) | 433, 437 |
| BssECI | CCNNGG | 1 cut(s) | 979 |
| BssMI | GATC | 4 cut(s) | 593, 1028, 1280, 1324 |
| BssT1I | CCWWGG | 1 cut(s) | 979 |
| Bst2UI | CCWGG | 1 cut(s) | 666 |
| Bst4CI | ACNGT | 9 cut(s) | 125, 402, 584, 789, 1247, 1271, 1437, 1506, 1657 |
| Bst6I | CTCTTC | 2 cut(s) | 930, 1215 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1741 |
| BstAUI | TGTACA | 1 cut(s) | 613 |
| BstBAI | YACGTR | 2 cut(s) | 443, 1142 |
| BstBI | TTCGAA | 1 cut(s) | 1867 |
| BstDEI | CTNAG | 3 cut(s) | 360, 743, 1722 |
| BstF5I | GGATG | 2 cut(s) | 42, 1399 |
| BstHHI | GCGC | 1 cut(s) | 832 |
| BstKTI | GATC | 4 cut(s) | 596, 1031, 1283, 1327 |
| BstMBI | GATC | 4 cut(s) | 593, 1028, 1280, 1324 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 14, 382, 529, 532, 1526, 1741 |
| BstNI | CCWGG | 1 cut(s) | 666 |
| BstNSI | RCATGY | 1 cut(s) | 974 |
| BstSCI | CCNGG | 1 cut(s) | 664 |
| BstSFI | CTRYAG | 2 cut(s) | 822, 1656 |
| BstV1I | GCAGC | 8 cut(s) | 532, 535, 544, 844, 1207, 1661, 1728, 1770 |
| BstV2I | GAAGAC | 4 cut(s) | 149, 284, 756, 1814 |
| BstX2I | RGATCY | 3 cut(s) | 593, 1028, 1280 |
| BstYI | RGATCY | 3 cut(s) | 593, 1028, 1280 |
| BtsCI | GGATG | 2 cut(s) | 42, 1399 |
| BtsI | GCAGTG | 1 cut(s) | 1110 |
| BtsIMutI | CAGTG | 2 cut(s) | 794, 1110 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1655, 1741 |
| CfoI | GCGC | 1 cut(s) | 832 |
| Cfr13I | GGNCC | 1 cut(s) | 1541 |
| Csp6I | GTAC | 4 cut(s) | 440, 614, 719, 1438 |
| CviAII | CATG | 7 cut(s) | 140, 320, 854, 971, 1003, 1511, 1703 |
| CviQI | GTAC | 4 cut(s) | 440, 614, 719, 1438 |
| DdeI | CTNAG | 3 cut(s) | 360, 743, 1722 |
| DpnI | GATC | 4 cut(s) | 595, 1030, 1282, 1326 |
| DpnII | GATC | 4 cut(s) | 593, 1028, 1280, 1324 |
| DraIII | CACNNNGTG | 1 cut(s) | 1387 |
| Eam1104I | CTCTTC | 2 cut(s) | 930, 1215 |
| EarI | CTCTTC | 2 cut(s) | 930, 1215 |
| EciI | GGCGGA | 1 cut(s) | 1406 |
| Ecl136II | GAGCTC | 1 cut(s) | 434 |
| Eco130I | CCWWGG | 1 cut(s) | 979 |
| Eco24I | GRGCYC | 1 cut(s) | 436 |
| Eco47I | GGWCC | 1 cut(s) | 1541 |
| Eco53kI | GAGCTC | 1 cut(s) | 434 |
| Eco57I | CTGAAG | 3 cut(s) | 105, 507, 1799 |
| Eco88I | CYCGRG | 1 cut(s) | 1994 |
| EcoICRI | GAGCTC | 1 cut(s) | 434 |
| EcoRII | CCWGG | 1 cut(s) | 664 |
| EcoT14I | CCWWGG | 1 cut(s) | 979 |
| EcoT38I | GRGCYC | 1 cut(s) | 436 |
| ErhI | CCWWGG | 1 cut(s) | 979 |
| FaeI | CATG | 7 cut(s) | 143, 323, 857, 974, 1006, 1514, 1706 |
| FaqI | GGGAC | 2 cut(s) | 248, 467 |
| FatI | CATG | 7 cut(s) | 139, 319, 853, 970, 1002, 1510, 1702 |
| FauNDI | CATATG | 1 cut(s) | 870 |
| Fnu4HI | GCNGC | 9 cut(s) | 6, 521, 524, 533, 833, 1196, 1650, 1742, 1784 |
| FokI | GGATG | 2 cut(s) | 49, 1406 |
| FriOI | GRGCYC | 1 cut(s) | 436 |
| Fsp4HI | GCNGC | 9 cut(s) | 6, 521, 524, 533, 833, 1196, 1650, 1742, 1784 |
| FspBI | CTAG | 4 cut(s) | 249, 1212, 1629, 2023 |
| FspI | TGCGCA | 1 cut(s) | 831 |
| GlaI | GCGC | 1 cut(s) | 831 |
| GluI | GCNGC | 9 cut(s) | 6, 521, 524, 533, 833, 1196, 1650, 1742, 1784 |
| GsaI | CCCAGC | 1 cut(s) | 36 |
| GsuI | CTGGAG | 5 cut(s) | 420, 450, 582, 687, 1269 |
| HhaI | GCGC | 1 cut(s) | 832 |
| Hin1II | CATG | 7 cut(s) | 143, 323, 857, 974, 1006, 1514, 1706 |
| Hin6I | GCGC | 1 cut(s) | 830 |
| HinP1I | GCGC | 1 cut(s) | 830 |
| HincII | GTYRAC | 2 cut(s) | 81, 418 |
| HindII | GTYRAC | 2 cut(s) | 81, 418 |
| HinfI | GANTC | 5 cut(s) | 154, 239, 280, 550, 770 |
| HphI | GGTGA | 4 cut(s) | 248, 1021, 1249, 1816 |
| Hpy166II | GTNNAC | 3 cut(s) | 81, 418, 976 |
| Hpy188I | TCNGA | 5 cut(s) | 285, 864, 1573, 1689, 1723 |
| Hpy8I | GTNNAC | 3 cut(s) | 81, 418, 976 |
| HpyAV | CCTTC | 3 cut(s) | 280, 1000, 1840 |
| HpyCH4III | ACNGT | 9 cut(s) | 125, 402, 584, 789, 1247, 1271, 1437, 1506, 1657 |
| HpyCH4IV | ACGT | 2 cut(s) | 442, 1141 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 14, 382, 529, 532, 1526, 1741 |
| HpyF3I | CTNAG | 3 cut(s) | 360, 743, 1722 |
| HpySE526I | ACGT | 2 cut(s) | 442, 1141 |
| Hsp92II | CATG | 7 cut(s) | 143, 323, 857, 974, 1006, 1514, 1706 |
| HspAI | GCGC | 1 cut(s) | 830 |
| Kzo9I | GATC | 4 cut(s) | 593, 1028, 1280, 1324 |
| LguI | GCTCTTC | 2 cut(s) | 930, 1215 |
| LmnI | GCTCC | 3 cut(s) | 431, 439, 1913 |
| Lsp1109I | GCAGC | 8 cut(s) | 532, 535, 544, 844, 1207, 1661, 1728, 1770 |
| LweI | GCATC | 3 cut(s) | 817, 1636, 1722 |
| MaeI | CTAG | 4 cut(s) | 249, 1212, 1629, 2023 |
| MaeII | ACGT | 2 cut(s) | 442, 1141 |
| MaeIII | GTNAC | 5 cut(s) | 355, 505, 730, 1171, 1506 |
| MalI | GATC | 4 cut(s) | 595, 1030, 1282, 1326 |
| MboI | GATC | 4 cut(s) | 593, 1028, 1280, 1324 |
| MfeI | CAATTG | 3 cut(s) | 51, 1328, 1454 |
| MflI | RGATCY | 3 cut(s) | 593, 1028, 1280 |
| MhlI | GDGCHC | 1 cut(s) | 436 |
| MlyI | GAGTC | 2 cut(s) | 163, 274 |
| MmeI | TCCRAC | 1 cut(s) | 248 |
| MnlI | CCTC | 7 cut(s) | 49, 61, 174, 1315, 1717, 1831, 2009 |
| MroXI | GAANNNNTTC | 2 cut(s) | 549, 1530 |
| MseI | TTAA | 4 cut(s) | 1604, 1758, 1800, 1935 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1007, 1802 |
| MspR9I | CCNGG | 1 cut(s) | 666 |
| MunI | CAATTG | 3 cut(s) | 51, 1328, 1454 |
| MvaI | CCWGG | 1 cut(s) | 666 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 14, 382, 529, 532, 1526, 1741 |
| NdeI | CATATG | 1 cut(s) | 870 |
| NdeII | GATC | 4 cut(s) | 593, 1028, 1280, 1324 |
| NlaIII | CATG | 7 cut(s) | 143, 323, 857, 974, 1006, 1514, 1706 |
| NmuCI | GTSAC | 3 cut(s) | 355, 505, 1171 |
| NsbI | TGCGCA | 1 cut(s) | 831 |
| NspI | RCATGY | 1 cut(s) | 974 |
| NspV | TTCGAA | 1 cut(s) | 1867 |
| PciI | ACATGT | 1 cut(s) | 970 |
| PciSI | GCTCTTC | 2 cut(s) | 930, 1215 |
| PdmI | GAANNNNTTC | 2 cut(s) | 549, 1530 |
| PfeI | GAWTC | 3 cut(s) | 239, 550, 770 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1904 |
| PkrI | GCNGC | 9 cut(s) | 7, 522, 525, 534, 834, 1197, 1651, 1743, 1785 |
| PleI | GAGTC | 2 cut(s) | 162, 274 |
| PpsI | GAGTC | 2 cut(s) | 162, 274 |
| Ppu21I | YACGTR | 2 cut(s) | 443, 1142 |
| PscI | ACATGT | 1 cut(s) | 970 |
| Psp124BI | GAGCTC | 1 cut(s) | 436 |
| Psp6I | CCWGG | 1 cut(s) | 664 |
| PspFI | CCCAGC | 1 cut(s) | 32 |
| PspGI | CCWGG | 1 cut(s) | 664 |
| PspPI | GGNCC | 1 cut(s) | 1541 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1655, 1741 |
| PsuI | RGATCY | 3 cut(s) | 593, 1028, 1280 |
| RsaI | GTAC | 4 cut(s) | 441, 615, 720, 1439 |
| RsaNI | GTAC | 4 cut(s) | 440, 614, 719, 1438 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1007, 1802 |
| SacI | GAGCTC | 1 cut(s) | 436 |
| SapI | GCTCTTC | 2 cut(s) | 930, 1215 |
| SaqAI | TTAA | 4 cut(s) | 1604, 1758, 1800, 1935 |
| SatI | GCNGC | 9 cut(s) | 6, 521, 524, 533, 833, 1196, 1650, 1742, 1784 |
| Sau3AI | GATC | 4 cut(s) | 593, 1028, 1280, 1324 |
| Sau96I | GGNCC | 1 cut(s) | 1541 |
| SchI | GAGTC | 2 cut(s) | 163, 274 |
| ScrFI | CCNGG | 1 cut(s) | 666 |
| SduI | GDGCHC | 1 cut(s) | 436 |
| SfaNI | GCATC | 3 cut(s) | 817, 1636, 1722 |
| SfcI | CTRYAG | 2 cut(s) | 822, 1656 |
| SfuI | TTCGAA | 1 cut(s) | 1867 |
| SinI | GGWCC | 1 cut(s) | 1541 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1007, 1802 |
| SmlI | CTYRAG | 1 cut(s) | 151 |
| SmoI | CTYRAG | 1 cut(s) | 151 |
| SsiI | CCGC | 5 cut(s) | 5, 15, 1391, 1586, 1911 |
| SspMI | CTAG | 4 cut(s) | 249, 1212, 1629, 2023 |
| SstI | GAGCTC | 1 cut(s) | 436 |
| StyD4I | CCNGG | 1 cut(s) | 664 |
| StyI | CCWWGG | 1 cut(s) | 979 |
| TaaI | ACNGT | 9 cut(s) | 125, 402, 584, 789, 1247, 1271, 1437, 1506, 1657 |
| TaiI | ACGT | 2 cut(s) | 445, 1144 |
| TaqI | TCGA | 5 cut(s) | 553, 678, 693, 1867, 1984 |
| TaqII | GACCGA | 1 cut(s) | 1524 |
| TatI | WGTACW | 2 cut(s) | 613, 718 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 3 cut(s) | 239, 550, 770 |
| Tru1I | TTAA | 4 cut(s) | 1604, 1758, 1800, 1935 |
| Tru9I | TTAA | 4 cut(s) | 1604, 1758, 1800, 1935 |
| TscAI | CASTG | 2 cut(s) | 794, 1110 |
| TseFI | GTSAC | 3 cut(s) | 355, 505, 1171 |
| TseI | GCWGC | 8 cut(s) | 520, 523, 532, 832, 1195, 1649, 1741, 1783 |
| Tsp45I | GTSAC | 3 cut(s) | 355, 505, 1171 |
| TspRI | CASTG | 2 cut(s) | 794, 1110 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1904 |
| VpaK11BI | GGWCC | 1 cut(s) | 1541 |
| XapI | RAATTY | 5 cut(s) | 101, 537, 642, 762, 1691 |
| XbaI | TCTAGA | 1 cut(s) | 248 |
| XceI | RCATGY | 1 cut(s) | 974 |
| XmnI | GAANNNNTTC | 2 cut(s) | 549, 1530 |
| XspI | CTAG | 4 cut(s) | 249, 1212, 1629, 2023 |