Rw7G019490

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000827
Physical Location & Seq
Forward (+)
21599893 .. 21631561
31669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019490.1

Sequence Viewer

Length: 1125 bp
ATGCCATTGGTCCAATCCTCCCTTGCAAAAAAACTAGCATTAGGCCGTCAGATTGTAGAACTTCTCAGTACTCCTGAAGCATGTGAAGATGTAGGACCAACAATCATGGATAAGTTATCTCAACCGGTGGTGCAAAATACAGATCATCATGGTCAACAAAAGATGTTGAAATCCAAGCCAACAACAATGGCAGCAAGTCCACAGCTCAAGTCAGCATCAGTGGAAGATCTTCCTCAAACAGCAAAAGAGTTGCAACAGAAGAAGCTGTGCCATATGAACTTGCGTTCATGCAGCCAAGCTGCATCACAACCTGAGCTTGTTGTATCGATGGCAAAATCATTGCCCTCAGAACACCAGTGTGAGCAGCCACAAGAAATGAAGCATCAAGGCCTACGGAGGCCTAAGTTGAATTCACAAAATCAGCATAATGGTGAACTTCAGCCCCCAAAGCATCTTGAGCAGCCACAGAAACCAAGAGGCAGGGCTCCTAAACGAAAACTGGATGTGGCTGCAAATGAAGATGTATCATTGCCTCCTAAGTATCAGAAGCTGCAGGATGAACCAGAAAATCAAAGACAAGAGAGGCCTCCTAAGTTGAAAAGAAATATGGTTTTGGGTCTTTTTGCCGCATCAAAATATGAACCTGCTCTGTCGATGACAGACTCACTGTTCCTAAAGAGTAATGAAATTTTTAGCAAAGCTGAATTTGCGATCCTTGCTTCCACATCTCGGTTAACTCGTCTTGACTCTCATTTAAGGATGTCGCTGACCACGGTTGAGGACGTCGGTGGGGTTGCGACGGGTCAAGCTCTATCGGCGGACGGAAACAACGACAACGAAGAAACAAGAGGGAGGTCTACTAAGCGGGCCGGCGTCACGCACCACTCCCCCACTCAGGTGCTCCAGAATTTCAATGAGGTTCGATTCCTCAGAATTGAGCTTCCCTCCGGCGAGTTGGGCATAGAGGGCAATCAATGGCCTAACGTTGATTCCAAGGTCGTGACCTTTTTGCTGGTTGGCCGACAAGACAGTTCATATGGCAAGGCTCTGATCGATGATGGGAACGACAACTGTAACCACACTTTGAAAGATCATACAACTGAGCTCCTTCATGGATTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

374

Amino Acids

41.5

Weight (kDa)

8.48

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 786
Acc36I ACCTGC 1 cut(s) 652
AccI GTMKAC 1 cut(s) 857
AciI CCGC 3 cut(s) 627, 818, 865
AclI AACGTT 1 cut(s) 984
AclWI GGATC 1 cut(s) 706
AcoI YGGCCR 1 cut(s) 1018
AcsI RAATTY 4 cut(s) 409, 687, 704, 907
AcuI CTGAAG 2 cut(s) 96, 422
AcyI GRCGYC 2 cut(s) 783, 873
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 729, 895
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 5 cut(s) 169, 409, 598, 913, 1087
AleI CACNNNNGTG 2 cut(s) 357, 896
AluBI AGCT 9 cut(s) 205, 265, 299, 316, 550, 701, 809, 940, 1105
AluI AGCT 9 cut(s) 205, 265, 299, 316, 550, 701, 809, 940, 1105
Alw21I GWGCWC 2 cut(s) 903, 1107
AlwI GGATC 1 cut(s) 706
AlwNI CAGNNNCTG 1 cut(s) 550
AoxI GGCC 7 cut(s) 43, 388, 398, 584, 867, 977, 1018
ApeKI GCWGC 7 cut(s) 191, 291, 299, 364, 460, 509, 550
ApoI RAATTY 4 cut(s) 409, 687, 704, 907
AsiGI ACCGGT 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 3 cut(s) 10, 95, 867
AsuHPI GGTGA 1 cut(s) 443
AvaII GGWCC 2 cut(s) 10, 95
BanII GRGCYC 2 cut(s) 487, 1107
Bbv12I GWGCWC 2 cut(s) 903, 1107
BbvI GCAGC 7 cut(s) 203, 286, 303, 376, 472, 496, 537
BccI CCATC 2 cut(s) 322, 1052
BceAI ACGGC 1 cut(s) 30
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 652
BglII AGATCT 1 cut(s) 226
BisI GCNGC 8 cut(s) 192, 292, 300, 365, 461, 510, 551, 627
BlsI GCNGC 8 cut(s) 193, 293, 301, 366, 462, 511, 552, 628
BmcAI AGTACT 1 cut(s) 70
Bme18I GGWCC 2 cut(s) 10, 95
BmgT120I GGNCC 3 cut(s) 10, 95, 867
BmiI GGNNCC 1 cut(s) 486
BmsI GCATC 5 cut(s) 224, 311, 391, 460, 638
BplI GAGNNNNNCTC 2 cut(s) 929, 961
BpmI CTGGAG 1 cut(s) 887
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 191, 476
Bsa29I ATCGAT 2 cut(s) 326, 1053
BsaHI GRCGYC 2 cut(s) 783, 873
BsaJI CCNNGG 2 cut(s) 771, 993
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 729, 895
Bse118I RCCGGY 2 cut(s) 124, 869
Bse1I ACTGG 2 cut(s) 355, 504
Bse3DI GCAATG 2 cut(s) 338, 527
BseCI ATCGAT 2 cut(s) 326, 1053
BseDI CCNNGG 2 cut(s) 771, 993
BseGI GGATG 3 cut(s) 508, 562, 765
BseLI CCNNNNNNNGG 2 cut(s) 729, 895
BseMI GCAATG 2 cut(s) 338, 527
BseMII CTCAG 6 cut(s) 79, 303, 360, 908, 943, 1092
BseNI ACTGG 2 cut(s) 355, 504
BseXI GCAGC 7 cut(s) 203, 286, 303, 376, 472, 496, 537
BshFI GGCC 7 cut(s) 45, 390, 400, 586, 869, 979, 1020
BshTI ACCGGT 1 cut(s) 124
BshVI ATCGAT 2 cut(s) 326, 1053
BsiHKAI GWGCWC 2 cut(s) 903, 1107
BsiSI CCGG 3 cut(s) 125, 870, 948
BslI CCNNNNNNNGG 2 cut(s) 729, 895
BsnI GGCC 7 cut(s) 45, 390, 400, 586, 869, 979, 1020
Bsp1286I GDGCHC 3 cut(s) 487, 903, 1107
Bsp143I GATC 5 cut(s) 142, 226, 711, 1050, 1090
BspACI CCGC 3 cut(s) 627, 818, 865
BspANI GGCC 7 cut(s) 45, 390, 400, 586, 869, 979, 1020
BspCNI CTCAG 6 cut(s) 78, 304, 359, 907, 942, 1093
BspDI ATCGAT 2 cut(s) 326, 1053
BspLI GGNNCC 1 cut(s) 486
BspMAI CTGCAG 1 cut(s) 555
BspMI ACCTGC 1 cut(s) 652
BspPI GGATC 1 cut(s) 706
BsrDI GCAATG 2 cut(s) 338, 527
BsrFI RCCGGY 2 cut(s) 124, 869
BsrI ACTGG 2 cut(s) 355, 504
BssAI RCCGGY 2 cut(s) 124, 869
BssECI CCNNGG 2 cut(s) 771, 993
BssMI GATC 5 cut(s) 142, 226, 711, 1050, 1090
BssNI GRCGYC 2 cut(s) 783, 873
BssT1I CCWWGG 1 cut(s) 993
Bst4CI ACNGT 4 cut(s) 669, 775, 1031, 1073
BstACI GRCGYC 2 cut(s) 783, 873
BstC8I GCNNGC 2 cut(s) 867, 871
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 3 cut(s) 508, 562, 765
BstKTI GATC 5 cut(s) 145, 229, 714, 1053, 1093
BstMBI GATC 5 cut(s) 142, 226, 711, 1050, 1090
BstMWI GCNNNNNNNGC 7 cut(s) 448, 457, 707, 716, 815, 957, 966
BstNSI RCATGY 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 551
BstV1I GCAGC 7 cut(s) 203, 286, 303, 376, 472, 496, 537
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Bsu15I ATCGAT 2 cut(s) 326, 1053
BsuRI GGCC 7 cut(s) 45, 390, 400, 586, 869, 979, 1020
BsuTUI ATCGAT 2 cut(s) 326, 1053
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 3 cut(s) 508, 562, 765
BtsIMutI CAGTG 3 cut(s) 225, 362, 665
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 2 cut(s) 867, 871
CaiI CAGNNNCTG 1 cut(s) 550
Cfr10I RCCGGY 2 cut(s) 124, 869
Cfr13I GGNCC 3 cut(s) 10, 95, 867
ClaI ATCGAT 2 cut(s) 326, 1053
CseI GACGC 1 cut(s) 862
Csp6I GTAC 1 cut(s) 69
CspAI ACCGGT 1 cut(s) 124
CviAII CATG 5 cut(s) 81, 106, 149, 288, 1112
CviQI GTAC 1 cut(s) 69
DpnI GATC 5 cut(s) 144, 228, 713, 1052, 1092
DpnII GATC 5 cut(s) 142, 226, 711, 1050, 1090
EaeI YGGCCR 1 cut(s) 1018
EciI GGCGGA 1 cut(s) 833
Ecl136II GAGCTC 1 cut(s) 1105
Eco130I CCWWGG 1 cut(s) 993
Eco147I AGGCCT 3 cut(s) 390, 400, 586
Eco24I GRGCYC 2 cut(s) 487, 1107
Eco47I GGWCC 2 cut(s) 10, 95
Eco53kI GAGCTC 1 cut(s) 1105
Eco57I CTGAAG 2 cut(s) 96, 422
EcoICRI GAGCTC 1 cut(s) 1105
EcoRI GAATTC 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 993
EcoT38I GRGCYC 2 cut(s) 487, 1107
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 5 cut(s) 84, 109, 152, 291, 1115
FatI CATG 5 cut(s) 80, 105, 148, 287, 1111
FauI CCCGC 1 cut(s) 858
FauNDI CATATG 2 cut(s) 273, 1036
FblI GTMKAC 1 cut(s) 857
Fnu4HI GCNGC 8 cut(s) 192, 292, 300, 365, 461, 510, 551, 627
FokI GGATG 3 cut(s) 515, 569, 772
FriOI GRGCYC 2 cut(s) 487, 1107
Fsp4HI GCNGC 8 cut(s) 192, 292, 300, 365, 461, 510, 551, 627
FspBI CTAG 1 cut(s) 35
GluI GCNGC 8 cut(s) 192, 292, 300, 365, 461, 510, 551, 627
GsuI CTGGAG 1 cut(s) 887
HaeIII GGCC 7 cut(s) 45, 390, 400, 586, 869, 979, 1020
HapII CCGG 3 cut(s) 125, 870, 948
HgaI GACGC 1 cut(s) 862
Hin1I GRCGYC 2 cut(s) 783, 873
Hin1II CATG 5 cut(s) 84, 109, 152, 291, 1115
HincII GTYRAC 2 cut(s) 155, 735
HindII GTYRAC 2 cut(s) 155, 735
HinfI GANTC 4 cut(s) 662, 746, 924, 989
HpaI GTTAAC 1 cut(s) 735
HpaII CCGG 3 cut(s) 125, 870, 948
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 5 cut(s) 155, 200, 434, 735, 858
Hpy188I TCNGA 5 cut(s) 51, 349, 546, 932, 1050
Hpy188III TCNNGA 6 cut(s) 74, 455, 743, 904, 1000, 1122
Hpy8I GTNNAC 5 cut(s) 155, 200, 434, 735, 858
Hpy99I CGWCG 2 cut(s) 788, 802
HpyAV CCTTC 1 cut(s) 1118
HpyCH4III ACNGT 4 cut(s) 669, 775, 1031, 1073
HpyCH4IV ACGT 2 cut(s) 783, 984
HpyCH4V TGCA 7 cut(s) 26, 133, 253, 291, 302, 512, 553
HpyF10VI GCNNNNNNNGC 7 cut(s) 448, 457, 707, 716, 815, 957, 966
HpySE526I ACGT 2 cut(s) 783, 984
Hsp92I GRCGYC 2 cut(s) 783, 873
Hsp92II CATG 5 cut(s) 84, 109, 152, 291, 1115
KroI GCCGGC 1 cut(s) 869
KroNI GCCGGC 1 cut(s) 871
KspAI GTTAAC 1 cut(s) 735
Kzo9I GATC 5 cut(s) 142, 226, 711, 1050, 1090
LmnI GCTCC 3 cut(s) 490, 906, 1110
Lsp1109I GCAGC 7 cut(s) 203, 286, 303, 376, 472, 496, 537
LweI GCATC 5 cut(s) 224, 311, 391, 460, 638
MaeI CTAG 1 cut(s) 35
MaeII ACGT 2 cut(s) 783, 984
MaeIII GTNAC 3 cut(s) 874, 1000, 1073
MalI GATC 5 cut(s) 144, 228, 713, 1052, 1092
MboI GATC 5 cut(s) 142, 226, 711, 1050, 1090
MboII GAAGA 6 cut(s) 98, 221, 236, 271, 530, 851
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 3 cut(s) 487, 903, 1107
MluCI AATT 5 cut(s) 409, 687, 704, 907, 933
MlyI GAGTC 2 cut(s) 656, 740
MroNI GCCGGC 1 cut(s) 869
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 2 cut(s) 734, 755
MslI CAYNNNNRTG 3 cut(s) 357, 429, 896
MspI CCGG 3 cut(s) 125, 870, 948
MwoI GCNNNNNNNGC 7 cut(s) 448, 457, 707, 716, 815, 957, 966
NaeI GCCGGC 1 cut(s) 871
NdeI CATATG 2 cut(s) 273, 1036
NdeII GATC 5 cut(s) 142, 226, 711, 1050, 1090
NgoMIV GCCGGC 1 cut(s) 869
NlaIII CATG 5 cut(s) 84, 109, 152, 291, 1115
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 2 cut(s) 874, 1000
NspI RCATGY 1 cut(s) 84
OliI CACNNNNGTG 2 cut(s) 357, 896
PceI AGGCCT 3 cut(s) 390, 400, 586
PcsI WCGNNNNNNNCGW 2 cut(s) 736, 828
PdiI GCCGGC 1 cut(s) 871
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 924, 989
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 8 cut(s) 193, 293, 301, 366, 462, 511, 552, 628
PleI GAGTC 2 cut(s) 656, 740
PpsI GAGTC 2 cut(s) 656, 740
Psp124BI GAGCTC 1 cut(s) 1107
Psp1406I AACGTT 1 cut(s) 984
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 3 cut(s) 10, 95, 867
PstI CTGCAG 1 cut(s) 555
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 3 cut(s) 357, 429, 896
SacI GAGCTC 1 cut(s) 1107
SaqAI TTAA 2 cut(s) 734, 755
SatI GCNGC 8 cut(s) 192, 292, 300, 365, 461, 510, 551, 627
Sau3AI GATC 5 cut(s) 142, 226, 711, 1050, 1090
Sau96I GGNCC 3 cut(s) 10, 95, 867
ScaI AGTACT 1 cut(s) 70
SchI GAGTC 2 cut(s) 656, 740
SduI GDGCHC 3 cut(s) 487, 903, 1107
SfaNI GCATC 5 cut(s) 224, 311, 391, 460, 638
SfcI CTRYAG 1 cut(s) 551
SinI GGWCC 2 cut(s) 10, 95
SmiMI CAYNNNNRTG 3 cut(s) 357, 429, 896
SmlI CTYRAG 2 cut(s) 206, 455
SmoI CTYRAG 2 cut(s) 206, 455
Sse9I AATT 5 cut(s) 409, 687, 704, 907, 933
SseBI AGGCCT 3 cut(s) 390, 400, 586
SsiI CCGC 3 cut(s) 627, 818, 865
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 1107
StuI AGGCCT 3 cut(s) 390, 400, 586
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 4 cut(s) 669, 775, 1031, 1073
TaiI ACGT 2 cut(s) 786, 987
TaqI TCGA 4 cut(s) 326, 653, 922, 1053
TasI AATT 5 cut(s) 409, 687, 704, 907, 933
TatI WGTACW 1 cut(s) 68
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 2 cut(s) 924, 989
Tru1I TTAA 2 cut(s) 734, 755
Tru9I TTAA 2 cut(s) 734, 755
TscAI CASTG 3 cut(s) 225, 362, 672
TseFI GTSAC 2 cut(s) 874, 1000
TseI GCWGC 7 cut(s) 191, 291, 299, 364, 460, 509, 550
Tsp45I GTSAC 2 cut(s) 874, 1000
TspDTI ATGAA 9 cut(s) 276, 290, 392, 531, 573, 654, 699, 1023, 1100
TspGWI ACGGA 2 cut(s) 409, 837
TspRI CASTG 3 cut(s) 225, 362, 672
VpaK11BI GGWCC 2 cut(s) 10, 95
XapI RAATTY 4 cut(s) 409, 687, 704, 907
XceI RCATGY 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 857
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 35
ZraI GACGTC 1 cut(s) 784
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.