Domain in histone families 1 and 5
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Linker_histone | PF00538 | 46 - 106 | 1.1e-10 | linker histone H1 and H5 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 876 |
| Acc16I | TGCGCA | 1 cut(s) | 1065 |
| AccB1I | GGYRCC | 1 cut(s) | 2131 |
| AccI | GTMKAC | 1 cut(s) | 106 |
| AccII | CGCG | 1 cut(s) | 2224 |
| AciI | CCGC | 6 cut(s) | 71, 1805, 1868, 2222, 2224, 2533 |
| AclWI | GGATC | 8 cut(s) | 553, 835, 1270, 1522, 1566, 2156, 2444, 2495 |
| AcsI | RAATTY | 5 cut(s) | 218, 323, 691, 996, 1910 |
| AcuI | CTGAAG | 1 cut(s) | 222 |
| AfaI | GTAC | 4 cut(s) | 849, 954, 1661, 1989 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 428, 2495 |
| AflIII | ACRYGT | 3 cut(s) | 1204, 1373, 1935 |
| AjnI | CCWGG | 4 cut(s) | 898, 2142, 2437, 2488 |
| Alw26I | GTCTC | 1 cut(s) | 2259 |
| AlwI | GGATC | 8 cut(s) | 553, 835, 1270, 1522, 1566, 2156, 2444, 2495 |
| Ama87I | CYCGRG | 1 cut(s) | 2088 |
| AoxI | GGCC | 1 cut(s) | 2332 |
| ApoI | RAATTY | 5 cut(s) | 218, 323, 691, 996, 1910 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 783, 1749 |
| AspLEI | GCGC | 1 cut(s) | 1066 |
| AspS9I | GGNCC | 2 cut(s) | 1760, 1951 |
| AsuC2I | CCSGG | 1 cut(s) | 687 |
| AsuHPI | GGTGA | 5 cut(s) | 128, 362, 610, 1255, 1483 |
| AvaI | CYCGRG | 1 cut(s) | 2088 |
| AvaII | GGWCC | 2 cut(s) | 1760, 1951 |
| BanI | GGYRCC | 1 cut(s) | 2131 |
| BanII | GRGCYC | 1 cut(s) | 2222 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 831, 863, 936, 968 |
| BbsI | GAAGAC | 3 cut(s) | 263, 398, 2318 |
| BccI | CCATC | 5 cut(s) | 22, 980, 1962, 2461, 2512 |
| BceAI | ACGGC | 1 cut(s) | 2145 |
| BciT130I | CCWGG | 4 cut(s) | 900, 2144, 2439, 2490 |
| BciVI | GTATCC | 1 cut(s) | 2266 |
| BclI | TGATCA | 1 cut(s) | 2188 |
| BcnI | CCSGG | 1 cut(s) | 687 |
| BcoDI | GTCTC | 1 cut(s) | 2259 |
| BfaI | CTAG | 4 cut(s) | 363, 1056, 1446, 1520 |
| BfmI | CTRYAG | 3 cut(s) | 696, 1875, 2345 |
| BfuI | GTATCC | 1 cut(s) | 2266 |
| Bme1390I | CCNGG | 5 cut(s) | 687, 900, 2144, 2439, 2490 |
| Bme18I | GGWCC | 2 cut(s) | 1760, 1951 |
| BmeT110I | CYCGRG | 1 cut(s) | 2088 |
| BmgT120I | GGNCC | 2 cut(s) | 1760, 1951 |
| BmiI | GGNNCC | 2 cut(s) | 2133, 2443 |
| BmrFI | CCNGG | 5 cut(s) | 687, 900, 2144, 2439, 2490 |
| BmsI | GCATC | 2 cut(s) | 1051, 1855 |
| BpiI | GAAGAC | 3 cut(s) | 263, 398, 2318 |
| BpmI | CTGGAG | 4 cut(s) | 534, 816, 921, 2511 |
| BpuEI | CTTGAG | 2 cut(s) | 286, 2460 |
| BpuMI | CCSGG | 1 cut(s) | 687 |
| Bsa29I | ATCGAT | 1 cut(s) | 1248 |
| BsaAI | YACGTR | 1 cut(s) | 1376 |
| BsaJI | CCNNGG | 2 cut(s) | 760, 2222 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 428, 2495 |
| Bse1I | ACTGG | 3 cut(s) | 547, 973, 2419 |
| BseBI | CCWGG | 4 cut(s) | 900, 2144, 2439, 2490 |
| BseCI | ATCGAT | 1 cut(s) | 1248 |
| BseDI | CCNNGG | 2 cut(s) | 760, 2222 |
| BseGI | GGATG | 2 cut(s) | 79, 1951 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 428, 2495 |
| BseMII | CTCAG | 4 cut(s) | 968, 1932, 1994, 2097 |
| BseNI | ACTGG | 3 cut(s) | 547, 973, 2419 |
| BseRI | GAGGAG | 1 cut(s) | 188 |
| BsgI | GTGCAG | 2 cut(s) | 650, 1239 |
| Bsh1236I | CGCG | 1 cut(s) | 2224 |
| BshFI | GGCC | 1 cut(s) | 2334 |
| BshNI | GGYRCC | 1 cut(s) | 2131 |
| BshVI | ATCGAT | 1 cut(s) | 1248 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2088 |
| BsiSI | CCGG | 1 cut(s) | 687 |
| BslFI | GGGAC | 2 cut(s) | 362, 701 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 428, 2495 |
| BsmAI | GTCTC | 1 cut(s) | 2259 |
| BsmBI | CGTCTC | 1 cut(s) | 2259 |
| BsmFI | GGGAC | 2 cut(s) | 362, 701 |
| BsmI | GAATGC | 1 cut(s) | 2395 |
| BsnI | GGCC | 1 cut(s) | 2334 |
| BsoBI | CYCGRG | 1 cut(s) | 2088 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2222 |
| Bsp1407I | TGTACA | 2 cut(s) | 847, 1987 |
| BspACI | CCGC | 6 cut(s) | 71, 1805, 1868, 2222, 2224, 2533 |
| BspANI | GGCC | 1 cut(s) | 2334 |
| BspCNI | CTCAG | 4 cut(s) | 969, 1933, 1995, 2098 |
| BspDI | ATCGAT | 1 cut(s) | 1248 |
| BspFNI | CGCG | 1 cut(s) | 2224 |
| BspLI | GGNNCC | 2 cut(s) | 2133, 2443 |
| BspMAI | CTGCAG | 2 cut(s) | 700, 2349 |
| BspPI | GGATC | 8 cut(s) | 553, 835, 1270, 1522, 1566, 2156, 2444, 2495 |
| BspQI | GCTCTTC | 1 cut(s) | 1449 |
| BspT107I | GGYRCC | 1 cut(s) | 2131 |
| BsrGI | TGTACA | 2 cut(s) | 847, 1987 |
| BsrI | ACTGG | 3 cut(s) | 547, 973, 2419 |
| BssECI | CCNNGG | 2 cut(s) | 760, 2222 |
| Bst2UI | CCWGG | 4 cut(s) | 900, 2144, 2439, 2490 |
| Bst4CI | ACNGT | 7 cut(s) | 516, 818, 1481, 1659, 1725, 1876, 1992 |
| Bst6I | CTCTTC | 1 cut(s) | 1449 |
| BstAUI | TGTACA | 2 cut(s) | 847, 1987 |
| BstBAI | YACGTR | 1 cut(s) | 1376 |
| BstC8I | GCNNGC | 3 cut(s) | 15, 39, 2222 |
| BstDEI | CTNAG | 5 cut(s) | 977, 1848, 1941, 2003, 2106 |
| BstDSI | CCRYGG | 2 cut(s) | 760, 2222 |
| BstF5I | GGATG | 2 cut(s) | 79, 1951 |
| BstFNI | CGCG | 1 cut(s) | 2224 |
| BstHHI | GCGC | 1 cut(s) | 1066 |
| BstMAI | GTCTC | 1 cut(s) | 2259 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 496, 763, 1745, 2353, 2356, 2401 |
| BstNI | CCWGG | 4 cut(s) | 900, 2144, 2439, 2490 |
| BstNSI | RCATGY | 2 cut(s) | 1208, 1939 |
| BstSCI | CCNGG | 5 cut(s) | 685, 898, 2142, 2437, 2488 |
| BstSFI | CTRYAG | 3 cut(s) | 696, 1875, 2345 |
| BstUI | CGCG | 1 cut(s) | 2224 |
| BstV2I | GAAGAC | 3 cut(s) | 263, 398, 2318 |
| BstX2I | RGATCY | 7 cut(s) | 545, 827, 1262, 1514, 2161, 2449, 2500 |
| BstYI | RGATCY | 7 cut(s) | 545, 827, 1262, 1514, 2161, 2449, 2500 |
| Bsu15I | ATCGAT | 1 cut(s) | 1248 |
| BsuI | GTATCC | 1 cut(s) | 2266 |
| BsuRI | GGCC | 1 cut(s) | 2334 |
| BsuTUI | ATCGAT | 1 cut(s) | 1248 |
| BtgI | CCRYGG | 2 cut(s) | 760, 2222 |
| BtgZI | GCGATG | 1 cut(s) | 2385 |
| BtsCI | GGATG | 2 cut(s) | 79, 1951 |
| BtsI | GCAGTG | 1 cut(s) | 1344 |
| BtsIMutI | CAGTG | 2 cut(s) | 1344, 2412 |
| Cac8I | GCNNGC | 3 cut(s) | 15, 39, 2222 |
| CfoI | GCGC | 1 cut(s) | 1066 |
| Cfr13I | GGNCC | 2 cut(s) | 1760, 1951 |
| Cfr42I | CCGCGG | 1 cut(s) | 2225 |
| ClaI | ATCGAT | 1 cut(s) | 1248 |
| Csp6I | GTAC | 4 cut(s) | 848, 953, 1660, 1988 |
| CviAII | CATG | 7 cut(s) | 254, 1088, 1205, 1237, 1730, 1922, 1936 |
| CviQI | GTAC | 4 cut(s) | 848, 953, 1660, 1988 |
| DdeI | CTNAG | 5 cut(s) | 977, 1848, 1941, 2003, 2106 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 876 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 876 |
| Eam1104I | CTCTTC | 1 cut(s) | 1449 |
| EarI | CTCTTC | 1 cut(s) | 1449 |
| Eco24I | GRGCYC | 1 cut(s) | 2222 |
| Eco32I | GATATC | 1 cut(s) | 88 |
| Eco47I | GGWCC | 2 cut(s) | 1760, 1951 |
| Eco57I | CTGAAG | 1 cut(s) | 222 |
| Eco88I | CYCGRG | 1 cut(s) | 2088 |
| EcoRII | CCWGG | 4 cut(s) | 898, 2142, 2437, 2488 |
| EcoRV | GATATC | 1 cut(s) | 88 |
| EcoT38I | GRGCYC | 1 cut(s) | 2222 |
| Esp3I | CGTCTC | 1 cut(s) | 2259 |
| FaeI | CATG | 7 cut(s) | 257, 1091, 1208, 1240, 1733, 1925, 1939 |
| FaqI | GGGAC | 2 cut(s) | 362, 701 |
| FatI | CATG | 7 cut(s) | 253, 1087, 1204, 1236, 1729, 1921, 1935 |
| FauI | CCCGC | 1 cut(s) | 2229 |
| FauNDI | CATATG | 1 cut(s) | 1104 |
| FbaI | TGATCA | 1 cut(s) | 2188 |
| FblI | GTMKAC | 1 cut(s) | 106 |
| FokI | GGATG | 2 cut(s) | 86, 1958 |
| FriOI | GRGCYC | 1 cut(s) | 2222 |
| FspBI | CTAG | 4 cut(s) | 363, 1056, 1446, 1520 |
| FspI | TGCGCA | 1 cut(s) | 1065 |
| GlaI | GCGC | 1 cut(s) | 1065 |
| GsuI | CTGGAG | 4 cut(s) | 534, 816, 921, 2511 |
| HaeIII | GGCC | 1 cut(s) | 2334 |
| HapII | CCGG | 1 cut(s) | 687 |
| HhaI | GCGC | 1 cut(s) | 1066 |
| Hin1II | CATG | 7 cut(s) | 257, 1091, 1208, 1240, 1733, 1925, 1939 |
| Hin6I | GCGC | 1 cut(s) | 1064 |
| HinP1I | GCGC | 1 cut(s) | 1064 |
| HincII | GTYRAC | 2 cut(s) | 198, 532 |
| HindII | GTYRAC | 2 cut(s) | 198, 532 |
| HindIII | AAGCTT | 2 cut(s) | 11, 2183 |
| HpaII | CCGG | 1 cut(s) | 687 |
| HphI | GGTGA | 5 cut(s) | 128, 362, 610, 1255, 1483 |
| Hpy166II | GTNNAC | 3 cut(s) | 107, 198, 532 |
| Hpy8I | GTNNAC | 3 cut(s) | 107, 198, 532 |
| HpyAV | CCTTC | 3 cut(s) | 656, 1234, 1975 |
| HpyCH4III | ACNGT | 7 cut(s) | 516, 818, 1481, 1659, 1725, 1876, 1992 |
| HpyCH4IV | ACGT | 4 cut(s) | 1375, 1462, 1621, 2083 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 496, 763, 1745, 2353, 2356, 2401 |
| HpyF3I | CTNAG | 5 cut(s) | 977, 1848, 1941, 2003, 2106 |
| HpySE526I | ACGT | 4 cut(s) | 1375, 1462, 1621, 2083 |
| Hsp92II | CATG | 7 cut(s) | 257, 1091, 1208, 1240, 1733, 1925, 1939 |
| HspAI | GCGC | 1 cut(s) | 1064 |
| Ksp22I | TGATCA | 1 cut(s) | 2188 |
| KspI | CCGCGG | 1 cut(s) | 2225 |
| LguI | GCTCTTC | 1 cut(s) | 1449 |
| LmnI | GCTCC | 3 cut(s) | 2059, 2146, 2441 |
| LweI | GCATC | 2 cut(s) | 1051, 1855 |
| MaeI | CTAG | 4 cut(s) | 363, 1056, 1446, 1520 |
| MaeII | ACGT | 4 cut(s) | 1375, 1462, 1621, 2083 |
| MaeIII | GTNAC | 7 cut(s) | 739, 964, 1330, 1405, 1725, 1997, 2421 |
| MfeI | CAATTG | 5 cut(s) | 168, 1562, 1676, 2045, 2213 |
| MflI | RGATCY | 7 cut(s) | 545, 827, 1262, 1514, 2161, 2449, 2500 |
| MhlI | GDGCHC | 1 cut(s) | 2222 |
| MlyI | GAGTC | 8 cut(s) | 102, 277, 388, 1046, 2014, 2117, 2252, 2308 |
| MmeI | TCCRAC | 2 cut(s) | 362, 2476 |
| MroXI | GAANNNNTTC | 2 cut(s) | 783, 1749 |
| MseI | TTAA | 5 cut(s) | 648, 1401, 1823, 1974, 2537 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1241, 2417 |
| MspA1I | CMGCKG | 4 cut(s) | 71, 2105, 2224, 2344 |
| MspI | CCGG | 1 cut(s) | 687 |
| MspR9I | CCNGG | 5 cut(s) | 687, 900, 2144, 2439, 2490 |
| MunI | CAATTG | 5 cut(s) | 168, 1562, 1676, 2045, 2213 |
| Mva1269I | GAATGC | 1 cut(s) | 2395 |
| MvaI | CCWGG | 4 cut(s) | 900, 2144, 2439, 2490 |
| MvnI | CGCG | 1 cut(s) | 2224 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 496, 763, 1745, 2353, 2356, 2401 |
| NciI | CCSGG | 1 cut(s) | 687 |
| NdeI | CATATG | 1 cut(s) | 1104 |
| NlaIII | CATG | 7 cut(s) | 257, 1091, 1208, 1240, 1733, 1925, 1939 |
| NlaIV | GGNNCC | 2 cut(s) | 2133, 2443 |
| NmuCI | GTSAC | 3 cut(s) | 739, 1405, 2421 |
| NsbI | TGCGCA | 1 cut(s) | 1065 |
| NspI | RCATGY | 2 cut(s) | 1208, 1939 |
| PaeR7I | CTCGAG | 1 cut(s) | 2088 |
| PciI | ACATGT | 2 cut(s) | 1204, 1935 |
| PciSI | GCTCTTC | 1 cut(s) | 1449 |
| PctI | GAATGC | 1 cut(s) | 2395 |
| PdmI | GAANNNNTTC | 2 cut(s) | 783, 1749 |
| PfeI | GAWTC | 6 cut(s) | 353, 617, 784, 1004, 2249, 2387 |
| PfoI | TCCNGGA | 1 cut(s) | 685 |
| PleI | GAGTC | 8 cut(s) | 102, 276, 388, 1046, 2013, 2116, 2251, 2307 |
| PpsI | GAGTC | 8 cut(s) | 102, 276, 388, 1046, 2013, 2116, 2251, 2307 |
| Ppu21I | YACGTR | 1 cut(s) | 1376 |
| PscI | ACATGT | 2 cut(s) | 1204, 1935 |
| Psp6I | CCWGG | 4 cut(s) | 898, 2142, 2437, 2488 |
| PspGI | CCWGG | 4 cut(s) | 898, 2142, 2437, 2488 |
| PspN4I | GGNNCC | 2 cut(s) | 2133, 2443 |
| PspPI | GGNCC | 2 cut(s) | 1760, 1951 |
| PstI | CTGCAG | 2 cut(s) | 700, 2349 |
| PsuI | RGATCY | 7 cut(s) | 545, 827, 1262, 1514, 2161, 2449, 2500 |
| PvuII | CAGCTG | 2 cut(s) | 2105, 2344 |
| RsaI | GTAC | 4 cut(s) | 849, 954, 1661, 1989 |
| RsaNI | GTAC | 4 cut(s) | 848, 953, 1660, 1988 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1241, 2417 |
| SacII | CCGCGG | 1 cut(s) | 2225 |
| SapI | GCTCTTC | 1 cut(s) | 1449 |
| SaqAI | TTAA | 5 cut(s) | 648, 1401, 1823, 1974, 2537 |
| Sau96I | GGNCC | 2 cut(s) | 1760, 1951 |
| SchI | GAGTC | 8 cut(s) | 102, 277, 388, 1046, 2014, 2117, 2252, 2308 |
| ScrFI | CCNGG | 5 cut(s) | 687, 900, 2144, 2439, 2490 |
| SduI | GDGCHC | 1 cut(s) | 2222 |
| SfaNI | GCATC | 2 cut(s) | 1051, 1855 |
| SfcI | CTRYAG | 3 cut(s) | 696, 1875, 2345 |
| Sfr274I | CTCGAG | 1 cut(s) | 2088 |
| Sfr303I | CCGCGG | 1 cut(s) | 2225 |
| SgrBI | CCGCGG | 1 cut(s) | 2225 |
| SinI | GGWCC | 2 cut(s) | 1760, 1951 |
| SlaI | CTCGAG | 1 cut(s) | 2088 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1241, 2417 |
| SmlI | CTYRAG | 3 cut(s) | 265, 2088, 2475 |
| SmoI | CTYRAG | 3 cut(s) | 265, 2088, 2475 |
| SsiI | CCGC | 6 cut(s) | 71, 1805, 1868, 2222, 2224, 2533 |
| SspMI | CTAG | 4 cut(s) | 363, 1056, 1446, 1520 |
| StyD4I | CCNGG | 5 cut(s) | 685, 898, 2142, 2437, 2488 |
| TaaI | ACNGT | 7 cut(s) | 516, 818, 1481, 1659, 1725, 1876, 1992 |
| TaiI | ACGT | 4 cut(s) | 1378, 1465, 1624, 2086 |
| TaqI | TCGA | 5 cut(s) | 787, 912, 1248, 2089, 2302 |
| TatI | WGTACW | 3 cut(s) | 847, 952, 1987 |
| TauI | GCSGC | 1 cut(s) | 1871 |
| TfiI | GAWTC | 6 cut(s) | 353, 617, 784, 1004, 2249, 2387 |
| Tru1I | TTAA | 5 cut(s) | 648, 1401, 1823, 1974, 2537 |
| Tru9I | TTAA | 5 cut(s) | 648, 1401, 1823, 1974, 2537 |
| TscAI | CASTG | 2 cut(s) | 1344, 2419 |
| TseFI | GTSAC | 3 cut(s) | 739, 1405, 2421 |
| Tsp45I | GTSAC | 3 cut(s) | 739, 1405, 2421 |
| TspRI | CASTG | 2 cut(s) | 1344, 2419 |
| VpaK11BI | GGWCC | 2 cut(s) | 1760, 1951 |
| XapI | RAATTY | 5 cut(s) | 218, 323, 691, 996, 1910 |
| XbaI | TCTAGA | 3 cut(s) | 362, 1055, 1519 |
| XceI | RCATGY | 2 cut(s) | 1208, 1939 |
| XhoI | CTCGAG | 1 cut(s) | 2088 |
| XmiI | GTMKAC | 1 cut(s) | 106 |
| XmnI | GAANNNNTTC | 2 cut(s) | 783, 1749 |
| XspI | CTAG | 4 cut(s) | 363, 1056, 1446, 1520 |