Rroxscaffold_3G00251640

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000827
Physical Location & Seq
Reverse (-)
45562278 .. 45563957
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251640.1

Sequence Viewer

Length: 831 bp
ATGTCACAAGTGGATAAGCCAGGAGCCGAAGATCCATCTCAACTGAAAAGGCAGCCTCAAGTGGAGAAGCCTGGAGTTGGAGATCCATCTCAACCAAAGAAGAAACAAGATAACCGCTTAAAAAAGCAAAAGTGGAGCACTCCAGAGCCCAGAACAATGCCCAACGCCACTGGTGCAATCGTCACTTACCAGAGACGGTCAGGTCAAACTATAGAGACCAACCCTGAAGCTTTTCAGGATCTAGGACCAACACTCGCAGACCATTTGGAGCAAAAAGAGAATCATCATGGTCAACGAAAGAAGTTCAAATCCAAGCCAACAGCAATGGAAAGTCTTGATGAGTTGGTTCTCACTTCCCAGCATCTTGTGGTGGATCCTCACATTCTAGTAAAGCCTCCACAGCTCAATCCAGCAGCAGTGGGACAATTGCCTCAAACAATAAAAGAGCCGCTGCAGAAACAGCAGCTGCTGGGCCATATGAAACTGCGCTCATGCAGCCAAGCTGCATTGCAATCTGAACCTGATGTTTCGATAGTGGGACAATTGCCTCAAACAACAAAAGAGCTGCCACAGAAACAGCAGCTGCTGCGCCGTATGAAACTACGCTCATGCGGCCAAGCTGCATTGCAATCTGAACCTGATGTTTCGATGATTGATACGCTGCCCACAAAGCACCATTCTGAGCAGCCACAAGAACAGAAGCATCCTAGGCAGCCACAGAAGCAAAGAGGGAGGACTCCTAAACCAAAACTGGATAGAGCTGGGCCTGTTAAGCATCAAAAGCTGCAGGAACAACCAAAAAGACGAGGGAGGCCCCTAAGTTGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

276

Amino Acids

31.23

Weight (kDa)

10.0

Isoelectric Point (pI)

69.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 201
AciI CCGC 3 cut(s) 115, 449, 612
AclWI GGATC 5 cut(s) 26, 77, 246, 368, 381
AcoI YGGCCR 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 77, 822
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 2 cut(s) 19, 70
AluBI AGCT 9 cut(s) 230, 403, 466, 503, 565, 583, 620, 761, 784
AluI AGCT 9 cut(s) 230, 403, 466, 503, 565, 583, 620, 761, 784
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 2 cut(s) 187, 209
AlwI GGATC 5 cut(s) 26, 77, 246, 368, 381
AlwNI CAGNNNCTG 4 cut(s) 466, 469, 583, 586
AoxI GGCC 4 cut(s) 472, 613, 764, 812
Asp700I GAANNNNTTC 1 cut(s) 231
AspA2I CCTAGG 1 cut(s) 707
AspLEI GCGC 2 cut(s) 489, 591
AspS9I GGNCC 4 cut(s) 245, 472, 764, 813
AvaII GGWCC 1 cut(s) 245
AvrII CCTAGG 1 cut(s) 707
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 2 cut(s) 43, 94
BceAI ACGGC 1 cut(s) 576
BciT130I CCWGG 2 cut(s) 21, 72
BcoDI GTCTC 2 cut(s) 187, 209
BfaI CTAG 3 cut(s) 242, 386, 708
BfmI CTRYAG 3 cut(s) 210, 452, 785
BlnI CCTAGG 1 cut(s) 707
Bme1390I CCNGG 2 cut(s) 21, 72
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 4 cut(s) 245, 472, 764, 813
BmiI GGNNCC 3 cut(s) 25, 375, 815
BmrFI CCNGG 2 cut(s) 21, 72
BmsI GCATC 3 cut(s) 370, 712, 784
BpmI CTGGAG 2 cut(s) 93, 126
BpuEI CTTGAG 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 707
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 822
Bse1I ACTGG 2 cut(s) 175, 756
Bse3DI GCAATG 3 cut(s) 330, 506, 623
BseBI CCWGG 2 cut(s) 21, 72
BseDI CCNNGG 1 cut(s) 707
BseGI GGATG 2 cut(s) 703, 831
BseLI CCNNNNNNNGG 2 cut(s) 77, 822
BseMI GCAATG 3 cut(s) 330, 506, 623
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 2 cut(s) 175, 756
BseYI CCCAGC 3 cut(s) 357, 469, 761
BshFI GGCC 4 cut(s) 474, 615, 766, 814
BsiHKAI GWGCWC 1 cut(s) 140
BslFI GGGAC 2 cut(s) 435, 552
BslI CCNNNNNNNGG 2 cut(s) 77, 822
BsmAI GTCTC 2 cut(s) 187, 209
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 435, 552
BsnI GGCC 4 cut(s) 474, 615, 766, 814
Bso31I GGTCTC 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 140, 150
Bsp143I GATC 4 cut(s) 31, 82, 238, 373
BspACI CCGC 3 cut(s) 115, 449, 612
BspANI GGCC 4 cut(s) 474, 615, 766, 814
BspCNI CTCAG 1 cut(s) 673
BspLI GGNNCC 3 cut(s) 25, 375, 815
BspMAI CTGCAG 2 cut(s) 456, 789
BspPI GGATC 5 cut(s) 26, 77, 246, 368, 381
BspTNI GGTCTC 1 cut(s) 209
BsrDI GCAATG 3 cut(s) 330, 506, 623
BsrI ACTGG 2 cut(s) 175, 756
BssECI CCNNGG 1 cut(s) 707
BssMI GATC 4 cut(s) 31, 82, 238, 373
BssT1I CCWWGG 1 cut(s) 707
Bst2UI CCWGG 2 cut(s) 21, 72
Bst4CI ACNGT 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 586
BstDEI CTNAG 2 cut(s) 681, 818
BstF5I GGATG 2 cut(s) 703, 831
BstHHI GCGC 2 cut(s) 489, 591
BstKTI GATC 4 cut(s) 34, 85, 241, 376
BstMAI GTCTC 2 cut(s) 187, 209
BstMBI GATC 4 cut(s) 31, 82, 238, 373
BstNI CCWGG 2 cut(s) 21, 72
BstSCI CCNGG 2 cut(s) 19, 70
BstSFI CTRYAG 3 cut(s) 210, 452, 785
BstX2I RGATCY 4 cut(s) 31, 82, 238, 373
BstYI RGATCY 4 cut(s) 31, 82, 238, 373
BsuRI GGCC 4 cut(s) 474, 615, 766, 814
BtsCI GGATG 2 cut(s) 703, 831
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 2 cut(s) 168, 423
CaiI CAGNNNCTG 4 cut(s) 466, 469, 583, 586
CfoI GCGC 2 cut(s) 489, 591
Cfr13I GGNCC 4 cut(s) 245, 472, 764, 813
CviAII CATG 3 cut(s) 287, 492, 609
DdeI CTNAG 2 cut(s) 681, 818
DpnI GATC 4 cut(s) 33, 84, 240, 375
DpnII GATC 4 cut(s) 31, 82, 238, 373
DrdI GACNNNNNNGTC 1 cut(s) 201
DseDI GACNNNNNNGTC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 613
Eco130I CCWWGG 1 cut(s) 707
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 813
EcoRII CCWGG 2 cut(s) 19, 70
EcoT14I CCWWGG 1 cut(s) 707
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 707
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 3 cut(s) 290, 495, 612
FaiI YATR 7 cut(s) 212, 288, 477, 479, 493, 596, 610
FaqI GGGAC 2 cut(s) 435, 552
FatI CATG 3 cut(s) 286, 491, 608
FauNDI CATATG 1 cut(s) 477
FokI GGATG 1 cut(s) 690
FriOI GRGCYC 1 cut(s) 150
FspBI CTAG 3 cut(s) 242, 386, 708
GlaI GCGC 2 cut(s) 488, 590
GsaI CCCAGC 3 cut(s) 361, 473, 765
GsuI CTGGAG 2 cut(s) 93, 126
HaeIII GGCC 4 cut(s) 474, 615, 766, 814
HhaI GCGC 2 cut(s) 489, 591
Hin1II CATG 3 cut(s) 290, 495, 612
Hin6I GCGC 2 cut(s) 487, 589
HinP1I GCGC 2 cut(s) 487, 589
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 2 cut(s) 280, 736
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 3 cut(s) 517, 634, 682
Hpy188III TCNNGA 3 cut(s) 143, 236, 335
Hpy8I GTNNAC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 8 cut(s) 176, 454, 495, 506, 511, 623, 628, 787
HpyF3I CTNAG 2 cut(s) 681, 818
Hsp92II CATG 3 cut(s) 290, 495, 612
HspAI GCGC 2 cut(s) 487, 589
Kzo9I GATC 4 cut(s) 31, 82, 238, 373
LmnI GCTCC 3 cut(s) 23, 135, 268
LweI GCATC 3 cut(s) 370, 712, 784
MaeI CTAG 3 cut(s) 242, 386, 708
MaeIII GTNAC 2 cut(s) 3, 181
MalI GATC 4 cut(s) 33, 84, 240, 375
MboI GATC 4 cut(s) 31, 82, 238, 373
MboII GAAGA 2 cut(s) 41, 112
MfeI CAATTG 2 cut(s) 425, 542
MflI RGATCY 4 cut(s) 31, 82, 238, 373
MhlI GDGCHC 2 cut(s) 140, 150
MluCI AATT 2 cut(s) 425, 542
MlyI GAGTC 1 cut(s) 730
MmeI TCCRAC 2 cut(s) 58, 803
MnlI CCTC 9 cut(s) 66, 387, 405, 441, 558, 722, 726, 800, 804
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 2 cut(s) 119, 771
MspA1I CMGCKG 3 cut(s) 451, 466, 583
MspR9I CCNGG 2 cut(s) 21, 72
MunI CAATTG 2 cut(s) 425, 542
MvaI CCWGG 2 cut(s) 21, 72
NdeI CATATG 1 cut(s) 477
NdeII GATC 4 cut(s) 31, 82, 238, 373
NlaIII CATG 3 cut(s) 290, 495, 612
NlaIV GGNNCC 3 cut(s) 25, 375, 815
NmuCI GTSAC 2 cut(s) 3, 181
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 280
PleI GAGTC 1 cut(s) 730
PpsI GAGTC 1 cut(s) 730
Psp6I CCWGG 2 cut(s) 19, 70
PspFI CCCAGC 3 cut(s) 357, 469, 761
PspGI CCWGG 2 cut(s) 19, 70
PspN4I GGNNCC 3 cut(s) 25, 375, 815
PspPI GGNCC 4 cut(s) 245, 472, 764, 813
PstI CTGCAG 2 cut(s) 456, 789
PstNI CAGNNNCTG 4 cut(s) 466, 469, 583, 586
PsuI RGATCY 4 cut(s) 31, 82, 238, 373
PvuII CAGCTG 2 cut(s) 466, 583
SaqAI TTAA 2 cut(s) 119, 771
Sau3AI GATC 4 cut(s) 31, 82, 238, 373
Sau96I GGNCC 4 cut(s) 245, 472, 764, 813
SchI GAGTC 1 cut(s) 730
ScrFI CCNGG 2 cut(s) 21, 72
SduI GDGCHC 2 cut(s) 140, 150
SfaNI GCATC 3 cut(s) 370, 712, 784
SfcI CTRYAG 3 cut(s) 210, 452, 785
SinI GGWCC 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 2 cut(s) 425, 542
SsiI CCGC 3 cut(s) 115, 449, 612
SspMI CTAG 3 cut(s) 242, 386, 708
StyD4I CCNGG 2 cut(s) 19, 70
StyI CCWWGG 1 cut(s) 707
TaaI ACNGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 530, 647
TasI AATT 2 cut(s) 425, 542
TauI GCSGC 2 cut(s) 451, 615
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 2 cut(s) 119, 771
Tru9I TTAA 2 cut(s) 119, 771
TscAI CASTG 2 cut(s) 175, 423
TseFI GTSAC 2 cut(s) 3, 181
Tsp45I GTSAC 2 cut(s) 3, 181
TspDTI ATGAA 2 cut(s) 494, 611
TspRI CASTG 2 cut(s) 175, 423
VpaK11BI GGWCC 1 cut(s) 245
XmaJI CCTAGG 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 3 cut(s) 242, 386, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.