Rh7AG226900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000827
Physical Location & Seq
Forward (+)
21454423 .. 21455906
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG226900.1

Sequence Viewer

Length: 729 bp
ATGTGTGTTACCAGTAGGAGAGAGGTTGTAGAGGACCTGGGTGAACTTGAGGGCACTGTCACTGACGCTGATGGCGGGAGTGAAATGATGATGGTCGGTGCAATGAAACCTTTGGGGTATGATGAGGAGACTGTTGGGCAGGGTCTCCTCTCACAACCTTTGGTCCAGTCCGTCTCGTCAGCGACGCCAGAGAGTTACTGCCACAACAAAACAAAACCAACCCACCAAGTCAGAAACCCATATAAAGAGGAAGAACGAGAGATTGTTCCTGAGCTAACATATCAAGAAAACCTTAAGGAGCAAGAACAGGAAATGCAGTCATTTAGTCACGAGAAGCATCAACAAGCTATTCTTTCTGATGTGGTGAAGACGCCTGATTTCCTATTAGCAACTGGTGCGGAGCAGGGAGTGGAATATGTGATTAAAGAAAATGTTGTTGAGCTTGAACTGACACCAAATTACCAATCTTGTCGAACACAACCTGAGCAAAAGCAGCAGCAGAGGCAACTAGGTCTTCCGGAGGCACCTAAATATCAGGATGAGGACCATCAAGTAGAAAATGTGATTAAGGAGAAGGCTGTACAGTCAAGTCACTTGAGTCTTGAATTGACAGAGCAACAACCGCAAAGGCAATTACGTCCTCGAGGTAAAAAGTCAGCTGAGTCTGATTATGGAGTGGCAACAGCACCTGAATGCCAGGTAGTAGCAATGACGTCTCTTGAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.25

Weight (kDa)

4.71

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 716
AbsI CCTCGAGG 1 cut(s) 642
AccB1I GGYRCC 1 cut(s) 523
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 3 cut(s) 75, 398, 623
AcyI GRCGYC 3 cut(s) 185, 371, 713
AfaI GTAC 1 cut(s) 582
AflII CTTAAG 1 cut(s) 293
AgsI TTSAA 3 cut(s) 446, 605, 722
AjnI CCWGG 2 cut(s) 36, 696
AluBI AGCT 4 cut(s) 274, 347, 442, 659
AluI AGCT 4 cut(s) 274, 347, 442, 659
Alw26I GTCTC 4 cut(s) 122, 149, 178, 720
AlwNI CAGNNNCTG 1 cut(s) 689
Ama87I CYCGRG 1 cut(s) 642
Aor13HI TCCGGA 1 cut(s) 517
ApeKI GCWGC 2 cut(s) 493, 496
AspS9I GGNCC 3 cut(s) 34, 163, 544
AsuHPI GGTGA 2 cut(s) 53, 376
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 3 cut(s) 34, 163, 544
BaeGI GKGCMC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 523
BauI CACGAG 1 cut(s) 329
BbsI GAAGAC 2 cut(s) 374, 506
BbvI GCAGC 2 cut(s) 505, 508
BccI CCATC 3 cut(s) 65, 85, 555
BciT130I CCWGG 2 cut(s) 38, 698
BcoDI GTCTC 4 cut(s) 122, 149, 178, 720
BfaI CTAG 1 cut(s) 509
BfrI CTTAAG 1 cut(s) 293
BisI GCNGC 2 cut(s) 494, 497
BlsI GCNGC 2 cut(s) 495, 498
Bme1390I CCNGG 2 cut(s) 38, 698
Bme18I GGWCC 3 cut(s) 34, 163, 544
BmeT110I CYCGRG 1 cut(s) 642
BmgT120I GGNCC 3 cut(s) 34, 163, 544
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 2 cut(s) 38, 698
BmsI GCATC 1 cut(s) 346
BpiI GAAGAC 2 cut(s) 374, 506
Bpu10I CCTNAGC 2 cut(s) 270, 483
BpuEI CTTGAG 2 cut(s) 68, 616
BsaHI GRCGYC 3 cut(s) 185, 371, 713
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 517
Bse1I ACTGG 3 cut(s) 12, 166, 397
Bse3DI GCAATG 2 cut(s) 108, 714
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 2 cut(s) 38, 698
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 544
BseMI GCAATG 2 cut(s) 108, 714
BseMII CTCAG 3 cut(s) 261, 474, 651
BseNI ACTGG 3 cut(s) 12, 166, 397
BseRI GAGGAG 2 cut(s) 137, 140
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 2 cut(s) 505, 508
BshNI GGYRCC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 1 cut(s) 518
BsmAI GTCTC 4 cut(s) 122, 149, 178, 720
BsmBI CGTCTC 2 cut(s) 178, 720
BsmI GAATGC 1 cut(s) 698
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 642
Bsp1286I GDGCHC 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 517
Bsp1407I TGTACA 1 cut(s) 580
BspACI CCGC 3 cut(s) 75, 398, 623
BspCNI CTCAG 3 cut(s) 262, 475, 652
BspEI TCCGGA 1 cut(s) 517
BspLI GGNNCC 1 cut(s) 525
BspT107I GGYRCC 1 cut(s) 523
BspTI CTTAAG 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 108, 714
BsrGI TGTACA 1 cut(s) 580
BsrI ACTGG 3 cut(s) 12, 166, 397
BssECI CCNNGG 1 cut(s) 37
BssNI GRCGYC 3 cut(s) 185, 371, 713
BssSI CACGAG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 329
Bst2UI CCWGG 2 cut(s) 38, 698
Bst4CI ACNGT 3 cut(s) 58, 133, 585
BstACI GRCGYC 3 cut(s) 185, 371, 713
BstAFI CTTAAG 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 395
BstAUI TGTACA 1 cut(s) 580
BstDEI CTNAG 3 cut(s) 270, 483, 660
BstF5I GGATG 1 cut(s) 544
BstMAI GTCTC 4 cut(s) 122, 149, 178, 720
BstMWI GCNNNNNNNGC 4 cut(s) 395, 493, 502, 622
BstNI CCWGG 2 cut(s) 38, 698
BstSCI CCNGG 2 cut(s) 36, 696
BstSLI GKGCMC 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 505, 508
BstV2I GAAGAC 2 cut(s) 374, 506
BtsCI GGATG 1 cut(s) 544
BtsIMutI CAGTG 2 cut(s) 54, 60
CaiI CAGNNNCTG 1 cut(s) 689
Cfr13I GGNCC 3 cut(s) 34, 163, 544
CseI GACGC 3 cut(s) 74, 193, 379
Csp6I GTAC 1 cut(s) 581
CviJI RGCY 5 cut(s) 274, 347, 442, 578, 659
CviKI_1 RGCY 5 cut(s) 274, 347, 442, 578, 659
CviQI GTAC 1 cut(s) 581
DdeI CTNAG 3 cut(s) 270, 483, 660
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 3 cut(s) 34, 163, 544
Eco88I CYCGRG 1 cut(s) 642
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 36, 696
Esp3I CGTCTC 2 cut(s) 178, 720
FaiI YATR 6 cut(s) 120, 241, 243, 280, 417, 672
FalI AAGNNNNNCTT 4 cut(s) 276, 308, 336, 368
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 494, 497
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 2 cut(s) 494, 497
FspBI CTAG 1 cut(s) 509
GluI GCNGC 2 cut(s) 494, 497
HapII CCGG 1 cut(s) 518
HgaI GACGC 3 cut(s) 74, 193, 379
Hin1I GRCGYC 3 cut(s) 185, 371, 713
HinfI GANTC 2 cut(s) 598, 662
HpaII CCGG 1 cut(s) 518
HphI GGTGA 2 cut(s) 53, 376
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 3 cut(s) 233, 358, 667
Hpy188III TCNNGA 7 cut(s) 269, 284, 329, 518, 536, 602, 719
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 3 cut(s) 58, 133, 585
HpyCH4IV ACGT 2 cut(s) 637, 713
HpyCH4V TGCA 2 cut(s) 101, 316
HpyF10VI GCNNNNNNNGC 4 cut(s) 395, 493, 502, 622
HpyF3I CTNAG 3 cut(s) 270, 483, 660
HpySE526I ACGT 2 cut(s) 637, 713
Hsp92I GRCGYC 3 cut(s) 185, 371, 713
Kpn2I TCCGGA 1 cut(s) 517
LmnI GCTCC 2 cut(s) 298, 400
Lsp1109I GCAGC 2 cut(s) 505, 508
LweI GCATC 1 cut(s) 346
MaeI CTAG 1 cut(s) 509
MaeII ACGT 2 cut(s) 637, 713
MaeIII GTNAC 5 cut(s) 7, 58, 194, 326, 590
MboII GAAGA 3 cut(s) 263, 379, 506
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 4 cut(s) 457, 605, 632, 722
MlyI GAGTC 2 cut(s) 607, 671
MroI TCCGGA 1 cut(s) 517
MseI TTAA 3 cut(s) 294, 423, 567
MslI CAYNNNNRTG 1 cut(s) 691
MspA1I CMGCKG 1 cut(s) 659
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 2 cut(s) 38, 698
Mva1269I GAATGC 1 cut(s) 698
MvaI CCWGG 2 cut(s) 38, 698
MwoI GCNNNNNNNGC 4 cut(s) 395, 493, 502, 622
NlaIV GGNNCC 1 cut(s) 525
NmuCI GTSAC 3 cut(s) 58, 326, 590
PaeR7I CTCGAG 1 cut(s) 642
PctI GAATGC 1 cut(s) 698
PkrI GCNGC 2 cut(s) 495, 498
PleI GAGTC 2 cut(s) 606, 670
PpsI GAGTC 2 cut(s) 606, 670
PpuMI RGGWCCY 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 36, 696
PspGI CCWGG 2 cut(s) 36, 696
PspN4I GGNNCC 1 cut(s) 525
PspPI GGNCC 3 cut(s) 34, 163, 544
PspPPI RGGWCCY 1 cut(s) 34
PspXI VCTCGAGB 1 cut(s) 642
PstNI CAGNNNCTG 1 cut(s) 689
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
RseI CAYNNNNRTG 1 cut(s) 691
SaqAI TTAA 3 cut(s) 294, 423, 567
SatI GCNGC 2 cut(s) 494, 497
Sau96I GGNCC 3 cut(s) 34, 163, 544
SchI GAGTC 2 cut(s) 607, 671
ScrFI CCNGG 2 cut(s) 38, 698
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 1 cut(s) 346
Sfr274I CTCGAG 1 cut(s) 642
SinI GGWCC 3 cut(s) 34, 163, 544
SlaI CTCGAG 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 691
SmlI CTYRAG 4 cut(s) 47, 293, 595, 642
SmoI CTYRAG 4 cut(s) 47, 293, 595, 642
Sse9I AATT 4 cut(s) 457, 605, 632, 722
SsiI CCGC 3 cut(s) 75, 398, 623
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 2 cut(s) 36, 696
TaaI ACNGT 3 cut(s) 58, 133, 585
TaiI ACGT 2 cut(s) 640, 716
TaqI TCGA 2 cut(s) 472, 643
TasI AATT 4 cut(s) 457, 605, 632, 722
TatI WGTACW 1 cut(s) 580
Tru1I TTAA 3 cut(s) 294, 423, 567
Tru9I TTAA 3 cut(s) 294, 423, 567
TscAI CASTG 2 cut(s) 61, 67
TseFI GTSAC 3 cut(s) 58, 326, 590
TseI GCWGC 2 cut(s) 493, 496
Tsp45I GTSAC 3 cut(s) 58, 326, 590
TspDTI ATGAA 1 cut(s) 119
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 2 cut(s) 61, 67
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 3 cut(s) 34, 163, 544
XhoI CTCGAG 1 cut(s) 642
XspI CTAG 1 cut(s) 509
ZraI GACGTC 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.