Rroxscaffold_3G00251730

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000827
Physical Location & Seq
Reverse (-)
45675094 .. 45678748
3655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251730.1

Sequence Viewer

Length: 762 bp
ATGAACATAGGAACTATCACCCAATCATTTGGAGCAGGAGAGAATGAGTGTTCAATAATCCTTCTGTGGACTAATGTATTTGCTTTGGTATCACTTACTTTATGGTCTCCCTTCTTCATGCCGTTTGTGGCCAGGCAAGTTCCAGGTTCAACCACGTATAGTCTAGCACTATACTATATGATGAGTTCTCTGGTTGAGGATGCACCCTTGCTGAGAATTTTAACAGTGGGAGTGGATTGCTATAAGGAGTGCCTACAATATGAAAGCAAGCATTCAAACCTGCAGCAAGCAAACAATATAGCGGCATCATTGGTCAAGCAAACATTGGCCACTGCAAATGCTAAAGAGTTTCGTGGCTGTATAACACGTGCTGGAGCTGCTTCATTAGATACATCCAGTCAGGTTCACCCATTAAAATTAAGCGCACAACCCACGAAGCAGAGTCAGAATCTGGCTTTGCGAGCAAATCCAAAGAGAGTTTCTGTGGACGAGAACAACAGGAATGAGGCTGGAATGCATGCGTCCTGCATAAGAGGAGGGCAGCGCTTCAGGATGCAACCAATGCTTTTTGTAAACCTTCATATGGGGACTGCTTCAATGCAACTAAACTTCAGCAAACTAAAAGACACTGATCTTTTCTTTTTTGTCATGATGGGTGACAATTCTTATTCCAATGGGAATGCCAATGTGAATGGAAATGGGAAGGGAGTATATGGAAATGGAGTGAAGAGAAAAAGCCATCGTGAAGAGCTGCTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

253

Amino Acids

27.87

Weight (kDa)

9.24

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AciI CCGC 1 cut(s) 302
AcoI YGGCCR 2 cut(s) 129, 327
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 2 cut(s) 532, 595
AcvI CACGTG 1 cut(s) 368
AfeI AGCGCT 1 cut(s) 545
AfiI CCNNNNNNNGG 1 cut(s) 583
AflIII ACRYGT 1 cut(s) 365
AgsI TTSAA 4 cut(s) 54, 150, 276, 597
AjnI CCWGG 2 cut(s) 131, 142
AjuI GAANNNNNNNTTGG 2 cut(s) 463, 495
AluBI AGCT 2 cut(s) 377, 751
AluI AGCT 2 cut(s) 377, 751
Alw26I GTCTC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 451
Aor51HI AGCGCT 1 cut(s) 545
AoxI GGCC 2 cut(s) 129, 327
ApeKI GCWGC 4 cut(s) 283, 377, 541, 751
ApoI RAATTY 1 cut(s) 216
AspLEI GCGC 2 cut(s) 425, 546
AsuHPI GGTGA 3 cut(s) 10, 398, 668
BalI TGGCCA 2 cut(s) 131, 329
BbrPI CACGTG 1 cut(s) 368
BbvI GCAGC 4 cut(s) 295, 364, 553, 738
BccI CCATC 2 cut(s) 646, 747
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 133, 144
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 547
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 5 cut(s) 284, 303, 378, 542, 752
BlsI GCNGC 5 cut(s) 285, 304, 379, 543, 753
Bme1390I CCNGG 2 cut(s) 133, 144
BmrFI CCNGG 2 cut(s) 133, 144
BmsI GCATC 3 cut(s) 190, 314, 543
BpmI CTGGAG 1 cut(s) 393
BsaAI YACGTR 2 cut(s) 156, 368
BsaI GGTCTC 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse1I ACTGG 1 cut(s) 396
BseBI CCWGG 2 cut(s) 133, 144
BseGI GGATG 3 cut(s) 205, 392, 558
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 4 cut(s) 295, 364, 553, 738
BshFI GGCC 2 cut(s) 131, 329
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 601
BsmI GAATGC 3 cut(s) 271, 519, 685
BsnI GGCC 2 cut(s) 131, 329
Bso31I GGTCTC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 631
BspACI CCGC 1 cut(s) 302
BspANI GGCC 2 cut(s) 131, 329
BspCNI CTCAG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 648
BspMAI CTGCAG 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 288
BspQI GCTCTTC 1 cut(s) 741
BspTNI GGTCTC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 396
BssMI GATC 1 cut(s) 631
Bst2UI CCWGG 2 cut(s) 133, 144
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 722, 741
BstAPI GCANNNNNTGC 1 cut(s) 562
BstBAI YACGTR 2 cut(s) 156, 368
BstC8I GCNNGC 4 cut(s) 269, 288, 462, 519
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 3 cut(s) 205, 392, 558
BstH2I RGCGCY 1 cut(s) 547
BstHHI GCGC 2 cut(s) 425, 546
BstKTI GATC 1 cut(s) 634
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 631
BstMWI GCNNNNNNNGC 3 cut(s) 377, 461, 562
BstNI CCWGG 2 cut(s) 133, 144
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 131, 142
BstSFI CTRYAG 1 cut(s) 281
BstV1I GCAGC 4 cut(s) 295, 364, 553, 738
BstXI CCANNNNNNTGG 1 cut(s) 29
BsuRI GGCC 2 cut(s) 131, 329
BtsCI GGATG 3 cut(s) 205, 392, 558
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 3 cut(s) 231, 330, 627
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 4 cut(s) 269, 288, 462, 519
CaiI CAGNNNCTG 1 cut(s) 451
CciI TCATGA 1 cut(s) 648
CfoI GCGC 2 cut(s) 425, 546
CseI GACGC 1 cut(s) 510
CviAII CATG 3 cut(s) 118, 518, 649
CviJI RGCY 8 cut(s) 131, 329, 357, 377, 455, 509, 738, 751
CviKI_1 RGCY 8 cut(s) 131, 329, 357, 377, 455, 509, 738, 751
DdeI CTNAG 1 cut(s) 212
DpnI GATC 1 cut(s) 633
DpnII GATC 1 cut(s) 631
EaeI YGGCCR 2 cut(s) 129, 327
Eam1104I CTCTTC 2 cut(s) 722, 741
EarI CTCTTC 2 cut(s) 722, 741
Eco31I GGTCTC 1 cut(s) 111
Eco47III AGCGCT 1 cut(s) 545
Eco57I CTGAAG 2 cut(s) 532, 595
Eco72I CACGTG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 131, 142
EcoT22I ATGCAT 1 cut(s) 519
FaeI CATG 3 cut(s) 121, 521, 652
FaqI GGGAC 1 cut(s) 601
FatI CATG 3 cut(s) 117, 517, 648
FauNDI CATATG 1 cut(s) 582
Fnu4HI GCNGC 5 cut(s) 284, 303, 378, 542, 752
FokI GGATG 3 cut(s) 212, 379, 565
Fsp4HI GCNGC 5 cut(s) 284, 303, 378, 542, 752
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 424, 545
GluI GCNGC 5 cut(s) 284, 303, 378, 542, 752
GsuI CTGGAG 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 547
HaeIII GGCC 2 cut(s) 131, 329
HgaI GACGC 1 cut(s) 510
HhaI GCGC 2 cut(s) 425, 546
Hin1II CATG 3 cut(s) 121, 521, 652
Hin6I GCGC 2 cut(s) 423, 544
HinP1I GCGC 2 cut(s) 423, 544
HinfI GANTC 2 cut(s) 442, 448
HphI GGTGA 3 cut(s) 10, 398, 668
Hpy166II GTNNAC 4 cut(s) 69, 406, 487, 574
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 3 cut(s) 550, 649, 743
Hpy8I GTNNAC 4 cut(s) 69, 406, 487, 574
HpyAV CCTTC 4 cut(s) 71, 121, 587, 697
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 2 cut(s) 155, 367
HpyCH4V TGCA 7 cut(s) 203, 283, 335, 517, 528, 556, 601
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 461, 562
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 2 cut(s) 155, 367
Hsp92II CATG 3 cut(s) 121, 521, 652
HspAI GCGC 2 cut(s) 423, 544
Kzo9I GATC 1 cut(s) 631
LguI GCTCTTC 1 cut(s) 741
LmnI GCTCC 2 cut(s) 32, 374
Lsp1109I GCAGC 4 cut(s) 295, 364, 553, 738
LweI GCATC 3 cut(s) 190, 314, 543
MaeI CTAG 1 cut(s) 164
MaeII ACGT 2 cut(s) 155, 367
MaeIII GTNAC 1 cut(s) 656
MalI GATC 1 cut(s) 633
MboI GATC 1 cut(s) 631
MboII GAAGA 3 cut(s) 106, 739, 758
MlsI TGGCCA 2 cut(s) 131, 329
MluCI AATT 3 cut(s) 216, 416, 661
MluNI TGGCCA 2 cut(s) 131, 329
MlyI GAGTC 1 cut(s) 451
MnlI CCTC 4 cut(s) 190, 499, 527, 530
Mox20I TGGCCA 2 cut(s) 131, 329
Mph1103I ATGCAT 1 cut(s) 519
MscI TGGCCA 2 cut(s) 131, 329
MseI TTAA 3 cut(s) 221, 413, 419
Msp20I TGGCCA 2 cut(s) 131, 329
MspR9I CCNGG 2 cut(s) 133, 144
Mva1269I GAATGC 3 cut(s) 271, 519, 685
MvaI CCWGG 2 cut(s) 133, 144
MwoI GCNNNNNNNGC 3 cut(s) 377, 461, 562
NdeI CATATG 1 cut(s) 582
NdeII GATC 1 cut(s) 631
NlaIII CATG 3 cut(s) 121, 521, 652
NmuCI GTSAC 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 519
NspI RCATGY 1 cut(s) 521
PaeI GCATGC 1 cut(s) 521
PagI TCATGA 1 cut(s) 648
PciSI GCTCTTC 1 cut(s) 741
PctI GAATGC 3 cut(s) 271, 519, 685
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 5 cut(s) 285, 304, 379, 543, 753
PleI GAGTC 1 cut(s) 450
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
PpsI GAGTC 1 cut(s) 450
Ppu21I YACGTR 2 cut(s) 156, 368
Psp6I CCWGG 2 cut(s) 131, 142
PspCI CACGTG 1 cut(s) 368
PspGI CCWGG 2 cut(s) 131, 142
PstI CTGCAG 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 451
SapI GCTCTTC 1 cut(s) 741
SaqAI TTAA 3 cut(s) 221, 413, 419
SatI GCNGC 5 cut(s) 284, 303, 378, 542, 752
Sau3AI GATC 1 cut(s) 631
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 2 cut(s) 133, 144
SetI ASST 8 cut(s) 148, 158, 282, 370, 379, 405, 579, 753
SfaNI GCATC 3 cut(s) 190, 314, 543
SfcI CTRYAG 1 cut(s) 281
SphI GCATGC 1 cut(s) 521
Sse9I AATT 3 cut(s) 216, 416, 661
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 131, 142
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 2 cut(s) 158, 370
TasI AATT 3 cut(s) 216, 416, 661
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 3 cut(s) 221, 413, 419
Tru9I TTAA 3 cut(s) 221, 413, 419
TscAI CASTG 3 cut(s) 231, 337, 634
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 4 cut(s) 283, 377, 541, 751
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 5 cut(s) 17, 106, 276, 372, 569
TspRI CASTG 3 cut(s) 231, 337, 634
XapI RAATTY 1 cut(s) 216
XceI RCATGY 1 cut(s) 521
XspI CTAG 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.