Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007739.1

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

54631 .. 55548

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007739.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atgcccaacaccactggtgcaatcgtcacttacctgagatggtcaggtcaaactatagagaccaaccctgaagcatttcaagatctaggaccaacactcgcagaccatttggagagaaaagagaatcatcatggtcaacaaaagaagttgaaatccaaaccaatagcaagagaaagtcctgatgagttggctctcacttcccagcatcttgtggtggatcctcacattctagtaaagcctccacagatcaatccagcagcagtgggacaattgtctcaaacaaaaaaagagccgccacagaaacagcagctgctgcaccatatgaaaccgcgctcatgcagccaagctgcattgcaatctgaacctgatgtttcaatagtgggacaattgcctcaaacaacaaaacagccgccacagaaacagcagctgctgccccataggagactacgctcacgcagccaagctgcgtcacaatttgaacctgatgttttgatgattgaatcactgcccttaaagcaccattgtgagcagtcacaagaacagaagcttcctaagcagccacagaagcaaagacggaggcctcctaaatcaaaaccggatagagctgggactgttaagcgtcaaaagctgcaggaacaaccaaaaagacaagggaggccccctaagtcggatttaaatactatatcagggagaaaattgttctcaaagaacaaacataagcaagcaaagagtccagtgaaggcaaagcctttgaaattgatcaaaggaaaactaccgagtcaagtgaggggaaagactcaaaaagtcactcaaggaacagtaaagaatcaagtgaggggaagggatcaaaaagtgactgaaggaactccaaagagtcaagggagggggagggctcgaaaagtgactaaaagaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

305

Amino Acids

34.42

Weight (kDa)

10.81

Isoelectric Point (pI)

64.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	331
AciI	CCGC	3 cut(s)	293, 329, 410
AclWI	GGATC	3 cut(s)	212, 225, 852
AcuI	CTGAAG	2 cut(s)	90, 879
AfiI	CCNNNNNNNGG	1 cut(s)	667
AgsI	TTSAA	6 cut(s)	80, 151, 375, 479, 500, 754
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	7 cut(s)	310, 347, 427, 464, 547, 605, 628
AluI	AGCT	7 cut(s)	310, 347, 427, 464, 547, 605, 628
Alw26I	GTCTC	3 cut(s)	53, 279, 436
AlwI	GGATC	3 cut(s)	212, 225, 852
AlwNI	CAGNNNCTG	4 cut(s)	310, 313, 427, 430
AoxI	GGCC	2 cut(s)	578, 656
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	89, 657
AvaII	GGWCC	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	895
BccI	CCATC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	759
BcoDI	GTCTC	3 cut(s)	53, 279, 436
BfaI	CTAG	2 cut(s)	86, 230
BfmI	CTRYAG	2 cut(s)	54, 629
BglII	AGATCT	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	89, 657
BmiI	GGNNCC	2 cut(s)	219, 659
BmsI	GCATC	1 cut(s)	214
BoxI	GACNNNNGTC	1 cut(s)	271
Bpu10I	CCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse1I	ACTGG	2 cut(s)	19, 734
Bse3DI	GCAATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	19, 734
BseYI	CCCAGC	2 cut(s)	201, 605
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	580, 658
BsiSI	CCGG	1 cut(s)	596
BslFI	GGGAC	3 cut(s)	279, 396, 622
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	3 cut(s)	53, 279, 436
BsmFI	GGGAC	3 cut(s)	279, 396, 622
BsnI	GGCC	2 cut(s)	580, 658
Bso31I	GGTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	895
Bsp143I	GATC	5 cut(s)	82, 217, 246, 759, 844
BspACI	CCGC	3 cut(s)	293, 329, 410
BspANI	GGCC	2 cut(s)	580, 658
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	219, 659
BspMAI	CTGCAG	1 cut(s)	633
BspPI	GGATC	3 cut(s)	212, 225, 852
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	19, 734
BssMI	GATC	5 cut(s)	82, 217, 246, 759, 844
Bst4CI	ACNGT	2 cut(s)	613, 820
BstAPI	GCANNNNNTGC	2 cut(s)	313, 430
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	3 cut(s)	35, 552, 663
BstFNI	CGCG	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	5 cut(s)	85, 220, 249, 762, 847
BstMAI	GTCTC	3 cut(s)	53, 279, 436
BstMBI	GATC	5 cut(s)	82, 217, 246, 759, 844
BstMWI	GCNNNNNNNGC	8 cut(s)	313, 339, 430, 456, 514, 553, 565, 625
BstPAI	GACNNNNGTC	1 cut(s)	271
BstSFI	CTRYAG	2 cut(s)	54, 629
BstUI	CGCG	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	82, 217
BstYI	RGATCY	2 cut(s)	82, 217
BsuRI	GGCC	2 cut(s)	580, 658
BtsI	GCAGTG	2 cut(s)	267, 503
BtsIMutI	CAGTG	4 cut(s)	12, 267, 503, 741
Cac8I	GCNNGC	1 cut(s)	723
CaiI	CAGNNNCTG	4 cut(s)	310, 313, 427, 430
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	89, 657
CseI	GACGC	2 cut(s)	456, 608
CviAII	CATG	2 cut(s)	131, 336
DdeI	CTNAG	3 cut(s)	35, 552, 663
DpnI	GATC	5 cut(s)	84, 219, 248, 761, 846
DpnII	GATC	5 cut(s)	82, 217, 246, 759, 844
DraI	TTTAAA	1 cut(s)	675
Eco147I	AGGCCT	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	895
Eco31I	GGTCTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	2 cut(s)	90, 879
EcoO109I	RGGNCCY	1 cut(s)	657
EcoT38I	GRGCYC	1 cut(s)	895
FaeI	CATG	2 cut(s)	134, 339
FaiI	YATR	8 cut(s)	56, 132, 321, 323, 337, 438, 683, 717
FaqI	GGGAC	3 cut(s)	279, 396, 622
FatI	CATG	2 cut(s)	130, 335
FauNDI	CATATG	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	759
FriOI	GRGCYC	1 cut(s)	895
FspBI	CTAG	2 cut(s)	86, 230
GlaI	GCGC	1 cut(s)	332
GsaI	CCCAGC	2 cut(s)	205, 609
HaeIII	GGCC	2 cut(s)	580, 658
HapII	CCGG	1 cut(s)	596
HgaI	GACGC	2 cut(s)	456, 608
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	134, 339
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	7 cut(s)	124, 500, 730, 778, 796, 826, 874
HpaII	CCGG	1 cut(s)	596
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	361, 670
Hpy188III	TCNNGA	2 cut(s)	80, 179
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	733, 834, 854
HpyCH4III	ACNGT	2 cut(s)	613, 820
HpyCH4V	TGCA	6 cut(s)	20, 316, 339, 350, 355, 631
HpyF10VI	GCNNNNNNNGC	8 cut(s)	313, 339, 430, 456, 514, 553, 565, 625
HpyF3I	CTNAG	3 cut(s)	35, 552, 663
Hsp92II	CATG	2 cut(s)	134, 339
HspAI	GCGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	759
Kzo9I	GATC	5 cut(s)	82, 217, 246, 759, 844
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	86, 230
MaeIII	GTNAC	6 cut(s)	25, 468, 531, 805, 853, 901
MalI	GATC	5 cut(s)	84, 219, 248, 761, 846
MboI	GATC	5 cut(s)	82, 217, 246, 759, 844
MfeI	CAATTG	2 cut(s)	269, 386
MflI	RGATCY	2 cut(s)	82, 217
MhlI	GDGCHC	1 cut(s)	895
MluCI	AATT	5 cut(s)	269, 386, 473, 695, 755
MlyI	GAGTC	4 cut(s)	739, 787, 790, 883
MmeI	TCCRAC	1 cut(s)	648
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	3 cut(s)	512, 615, 674
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	2 cut(s)	310, 427
MspI	CCGG	1 cut(s)	596
MunI	CAATTG	2 cut(s)	269, 386
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	8 cut(s)	313, 339, 430, 456, 514, 553, 565, 625
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	5 cut(s)	82, 217, 246, 759, 844
NlaIII	CATG	2 cut(s)	134, 339
NlaIV	GGNNCC	2 cut(s)	219, 659
NmuCI	GTSAC	6 cut(s)	25, 468, 531, 805, 853, 901
OliI	CACNNNNGTG	1 cut(s)	522
PceI	AGGCCT	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	124, 500, 826
PleI	GAGTC	4 cut(s)	738, 786, 790, 882
PpsI	GAGTC	4 cut(s)	738, 786, 790, 882
PshAI	GACNNNNGTC	1 cut(s)	271
PspFI	CCCAGC	2 cut(s)	201, 605
PspN4I	GGNNCC	2 cut(s)	219, 659
PspPI	GGNCC	2 cut(s)	89, 657
PstI	CTGCAG	1 cut(s)	633
PstNI	CAGNNNCTG	4 cut(s)	310, 313, 427, 430
PsuI	RGATCY	2 cut(s)	82, 217
PvuII	CAGCTG	2 cut(s)	310, 427
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	3 cut(s)	512, 615, 674
Sau3AI	GATC	5 cut(s)	82, 217, 246, 759, 844
Sau96I	GGNCC	2 cut(s)	89, 657
SchI	GAGTC	4 cut(s)	739, 787, 790, 883
SduI	GDGCHC	1 cut(s)	895
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	2 cut(s)	54, 629
SinI	GGWCC	1 cut(s)	89
SmiI	ATTTAAAT	1 cut(s)	675
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	810
SmoI	CTYRAG	1 cut(s)	810
Sse9I	AATT	5 cut(s)	269, 386, 473, 695, 755
SseBI	AGGCCT	1 cut(s)	580
SsiI	CCGC	3 cut(s)	293, 329, 410
SspMI	CTAG	2 cut(s)	86, 230
StuI	AGGCCT	1 cut(s)	580
SwaI	ATTTAAAT	1 cut(s)	675
TaaI	ACNGT	2 cut(s)	613, 820
TaqI	TCGA	1 cut(s)	895
TasI	AATT	5 cut(s)	269, 386, 473, 695, 755
TauI	GCSGC	2 cut(s)	295, 412
TfiI	GAWTC	3 cut(s)	124, 500, 826
Tru1I	TTAA	3 cut(s)	512, 615, 674
Tru9I	TTAA	3 cut(s)	512, 615, 674
TscAI	CASTG	4 cut(s)	19, 267, 510, 741
TseFI	GTSAC	6 cut(s)	25, 468, 531, 805, 853, 901
Tsp45I	GTSAC	6 cut(s)	25, 468, 531, 805, 853, 901
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	4 cut(s)	19, 267, 510, 741
VpaK11BI	GGWCC	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	2 cut(s)	86, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.