Domain in histone families 1 and 5
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1025 |
| AclWI | GGATC | 7 cut(s) | 259, 736, 902, 954, 1187, 1365, 1378 |
| AcsI | RAATTY | 3 cut(s) | 14, 122, 633 |
| AcuI | CTGAAG | 5 cut(s) | 69, 396, 411, 570, 893 |
| AfaI | GTAC | 1 cut(s) | 1200 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 994, 1025, 1298 |
| AflII | CTTAAG | 1 cut(s) | 1169 |
| AgsI | TTSAA | 7 cut(s) | 134, 215, 477, 512, 617, 659, 816 |
| AhlI | ACTAGT | 1 cut(s) | 827 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 35, 1012, 1044 |
| AluBI | AGCT | 4 cut(s) | 496, 673, 794, 1090 |
| AluI | AGCT | 4 cut(s) | 496, 673, 794, 1090 |
| Alw26I | GTCTC | 2 cut(s) | 405, 712 |
| AlwI | GGATC | 7 cut(s) | 259, 736, 902, 954, 1187, 1365, 1378 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 838 |
| Ama87I | CYCGRG | 1 cut(s) | 1295 |
| AoxI | GGCC | 1 cut(s) | 1300 |
| ApeKI | GCWGC | 7 cut(s) | 6, 76, 421, 794, 797, 1180, 1183 |
| ApoI | RAATTY | 3 cut(s) | 14, 122, 633 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 18, 210 |
| AspLEI | GCGC | 1 cut(s) | 547 |
| AspS9I | GGNCC | 1 cut(s) | 1300 |
| AsuHPI | GGTGA | 5 cut(s) | 95, 244, 382, 463, 1345 |
| AvaI | CYCGRG | 1 cut(s) | 1295 |
| BamHI | GGATCC | 1 cut(s) | 1370 |
| BbsI | GAAGAC | 1 cut(s) | 1055 |
| BbvCI | CCTCAGC | 1 cut(s) | 1091 |
| BbvI | GCAGC | 7 cut(s) | 18, 88, 433, 781, 809, 1192, 1195 |
| BccI | CCATC | 2 cut(s) | 37, 461 |
| BceAI | ACGGC | 1 cut(s) | 791 |
| BcoDI | GTCTC | 2 cut(s) | 405, 712 |
| BcuI | ACTAGT | 1 cut(s) | 827 |
| BfaI | CTAG | 3 cut(s) | 678, 828, 867 |
| BfmI | CTRYAG | 1 cut(s) | 795 |
| BfoI | RGCGCY | 1 cut(s) | 548 |
| BfrI | CTTAAG | 1 cut(s) | 1169 |
| BisI | GCNGC | 7 cut(s) | 7, 77, 422, 795, 798, 1181, 1184 |
| BlsI | GCNGC | 7 cut(s) | 8, 78, 423, 796, 799, 1182, 1185 |
| BmeT110I | CYCGRG | 1 cut(s) | 1295 |
| BmgT120I | GGNCC | 1 cut(s) | 1300 |
| BmiI | GGNNCC | 2 cut(s) | 1269, 1372 |
| BmsI | GCATC | 3 cut(s) | 99, 514, 1130 |
| BpiI | GAAGAC | 1 cut(s) | 1055 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 692, 724 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1091 |
| BsaI | GGTCTC | 1 cut(s) | 405 |
| BsaJI | CCNNGG | 3 cut(s) | 415, 1106, 1296 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 994, 1025, 1298 |
| Bse1I | ACTGG | 1 cut(s) | 1196 |
| Bse3DI | GCAATG | 1 cut(s) | 119 |
| BseDI | CCNNGG | 3 cut(s) | 415, 1106, 1296 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 994, 1025, 1298 |
| BseMI | GCAATG | 1 cut(s) | 119 |
| BseMII | CTCAG | 3 cut(s) | 318, 723, 1082 |
| BseNI | ACTGG | 1 cut(s) | 1196 |
| BseRI | GAGGAG | 2 cut(s) | 170, 810 |
| BseXI | GCAGC | 7 cut(s) | 18, 88, 433, 781, 809, 1192, 1195 |
| BseYI | CCCAGC | 1 cut(s) | 1375 |
| Bsh1285I | CGRYCG | 1 cut(s) | 460 |
| BshFI | GGCC | 1 cut(s) | 1302 |
| BsiEI | CGRYCG | 1 cut(s) | 460 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1295 |
| BsiSI | CCGG | 1 cut(s) | 1067 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 994, 1025, 1298 |
| BsmAI | GTCTC | 2 cut(s) | 405, 712 |
| BsnI | GGCC | 1 cut(s) | 1302 |
| Bso31I | GGTCTC | 1 cut(s) | 405 |
| BsoBI | CYCGRG | 1 cut(s) | 1295 |
| Bsp143I | GATC | 8 cut(s) | 251, 453, 553, 741, 894, 946, 1192, 1370 |
| Bsp19I | CCATGG | 2 cut(s) | 415, 1106 |
| BspANI | GGCC | 1 cut(s) | 1302 |
| BspCNI | CTCAG | 3 cut(s) | 319, 722, 1083 |
| BspHI | TCATGA | 2 cut(s) | 22, 364 |
| BspLI | GGNNCC | 2 cut(s) | 1269, 1372 |
| BspMAI | CTGCAG | 1 cut(s) | 799 |
| BspPI | GGATC | 7 cut(s) | 259, 736, 902, 954, 1187, 1365, 1378 |
| BspTI | CTTAAG | 1 cut(s) | 1169 |
| BspTNI | GGTCTC | 1 cut(s) | 405 |
| BsrDI | GCAATG | 1 cut(s) | 119 |
| BsrI | ACTGG | 1 cut(s) | 1196 |
| BssECI | CCNNGG | 3 cut(s) | 415, 1106, 1296 |
| BssMI | GATC | 8 cut(s) | 251, 453, 553, 741, 894, 946, 1192, 1370 |
| BssT1I | CCWWGG | 2 cut(s) | 415, 1106 |
| Bst4CI | ACNGT | 5 cut(s) | 227, 461, 570, 1160, 1260 |
| Bst6I | CTCTTC | 1 cut(s) | 654 |
| BstAFI | CTTAAG | 1 cut(s) | 1169 |
| BstC8I | GCNNGC | 1 cut(s) | 754 |
| BstDEI | CTNAG | 4 cut(s) | 327, 709, 1000, 1091 |
| BstDSI | CCRYGG | 2 cut(s) | 415, 1106 |
| BstH2I | RGCGCY | 1 cut(s) | 548 |
| BstHHI | GCGC | 1 cut(s) | 547 |
| BstKTI | GATC | 8 cut(s) | 254, 456, 556, 744, 897, 949, 1195, 1373 |
| BstMAI | GTCTC | 2 cut(s) | 405, 712 |
| BstMBI | GATC | 8 cut(s) | 251, 453, 553, 741, 894, 946, 1192, 1370 |
| BstMCI | CGRYCG | 1 cut(s) | 460 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 803, 1087, 1180 |
| BstSFI | CTRYAG | 1 cut(s) | 795 |
| BstV1I | GCAGC | 7 cut(s) | 18, 88, 433, 781, 809, 1192, 1195 |
| BstV2I | GAAGAC | 1 cut(s) | 1055 |
| BstX2I | RGATCY | 4 cut(s) | 741, 946, 1192, 1370 |
| BstYI | RGATCY | 4 cut(s) | 741, 946, 1192, 1370 |
| BsuRI | GGCC | 1 cut(s) | 1302 |
| BtgI | CCRYGG | 2 cut(s) | 415, 1106 |
| BtgZI | GCGATG | 1 cut(s) | 604 |
| Cac8I | GCNNGC | 1 cut(s) | 754 |
| CaiI | CAGNNNCTG | 1 cut(s) | 838 |
| CciI | TCATGA | 2 cut(s) | 22, 364 |
| CfoI | GCGC | 1 cut(s) | 547 |
| Cfr13I | GGNCC | 1 cut(s) | 1300 |
| Csp6I | GTAC | 1 cut(s) | 1199 |
| CviAII | CATG | 7 cut(s) | 23, 35, 365, 416, 958, 1107, 1242 |
| CviQI | GTAC | 1 cut(s) | 1199 |
| DdeI | CTNAG | 4 cut(s) | 327, 709, 1000, 1091 |
| DpnI | GATC | 8 cut(s) | 253, 455, 555, 743, 896, 948, 1194, 1372 |
| DpnII | GATC | 8 cut(s) | 251, 453, 553, 741, 894, 946, 1192, 1370 |
| Eam1104I | CTCTTC | 1 cut(s) | 654 |
| EarI | CTCTTC | 1 cut(s) | 654 |
| Eco130I | CCWWGG | 2 cut(s) | 415, 1106 |
| Eco31I | GGTCTC | 1 cut(s) | 405 |
| Eco32I | GATATC | 1 cut(s) | 340 |
| Eco57I | CTGAAG | 5 cut(s) | 69, 396, 411, 570, 893 |
| Eco88I | CYCGRG | 1 cut(s) | 1295 |
| EcoRV | GATATC | 1 cut(s) | 340 |
| EcoT14I | CCWWGG | 2 cut(s) | 415, 1106 |
| ErhI | CCWWGG | 2 cut(s) | 415, 1106 |
| FaeI | CATG | 7 cut(s) | 26, 38, 368, 419, 961, 1110, 1245 |
| FatI | CATG | 7 cut(s) | 22, 34, 364, 415, 957, 1106, 1241 |
| Fnu4HI | GCNGC | 7 cut(s) | 7, 77, 422, 795, 798, 1181, 1184 |
| Fsp4HI | GCNGC | 7 cut(s) | 7, 77, 422, 795, 798, 1181, 1184 |
| FspBI | CTAG | 3 cut(s) | 678, 828, 867 |
| GlaI | GCGC | 1 cut(s) | 546 |
| GluI | GCNGC | 7 cut(s) | 7, 77, 422, 795, 798, 1181, 1184 |
| GsaI | CCCAGC | 1 cut(s) | 1379 |
| HaeII | RGCGCY | 1 cut(s) | 548 |
| HaeIII | GGCC | 1 cut(s) | 1302 |
| HapII | CCGG | 1 cut(s) | 1067 |
| HhaI | GCGC | 1 cut(s) | 547 |
| Hin1II | CATG | 7 cut(s) | 26, 38, 368, 419, 961, 1110, 1245 |
| Hin6I | GCGC | 1 cut(s) | 545 |
| HinP1I | GCGC | 1 cut(s) | 545 |
| HinfI | GANTC | 5 cut(s) | 103, 361, 767, 1127, 1364 |
| HpaII | CCGG | 1 cut(s) | 1067 |
| HphI | GGTGA | 5 cut(s) | 95, 244, 382, 463, 1345 |
| Hpy166II | GTNNAC | 1 cut(s) | 191 |
| Hpy188I | TCNGA | 6 cut(s) | 102, 108, 712, 834, 1126, 1132 |
| Hpy8I | GTNNAC | 1 cut(s) | 191 |
| HpyAV | CCTTC | 3 cut(s) | 611, 1036, 1354 |
| HpyCH4III | ACNGT | 5 cut(s) | 227, 461, 570, 1160, 1260 |
| HpyCH4IV | ACGT | 1 cut(s) | 1102 |
| HpyCH4V | TGCA | 8 cut(s) | 112, 149, 353, 718, 763, 797, 931, 1137 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 803, 1087, 1180 |
| HpyF3I | CTNAG | 4 cut(s) | 327, 709, 1000, 1091 |
| HpySE526I | ACGT | 1 cut(s) | 1102 |
| Hsp92II | CATG | 7 cut(s) | 26, 38, 368, 419, 961, 1110, 1245 |
| HspAI | GCGC | 1 cut(s) | 545 |
| Kzo9I | GATC | 8 cut(s) | 251, 453, 553, 741, 894, 946, 1192, 1370 |
| LmnI | GCTCC | 1 cut(s) | 1177 |
| Lsp1109I | GCAGC | 7 cut(s) | 18, 88, 433, 781, 809, 1192, 1195 |
| LweI | GCATC | 3 cut(s) | 99, 514, 1130 |
| MaeI | CTAG | 3 cut(s) | 678, 828, 867 |
| MaeII | ACGT | 1 cut(s) | 1102 |
| MaeIII | GTNAC | 8 cut(s) | 166, 319, 370, 394, 598, 1260, 1330, 1394 |
| MalI | GATC | 8 cut(s) | 253, 455, 555, 743, 896, 948, 1194, 1372 |
| MboI | GATC | 8 cut(s) | 251, 453, 553, 741, 894, 946, 1192, 1370 |
| MfeI | CAATTG | 1 cut(s) | 1020 |
| MflI | RGATCY | 4 cut(s) | 741, 946, 1192, 1370 |
| MlyI | GAGTC | 2 cut(s) | 355, 776 |
| MmeI | TCCRAC | 1 cut(s) | 924 |
| MroXI | GAANNNNTTC | 2 cut(s) | 18, 210 |
| MseI | TTAA | 6 cut(s) | 624, 734, 747, 810, 1170, 1383 |
| MspA1I | CMGCKG | 1 cut(s) | 1090 |
| MspCI | CTTAAG | 1 cut(s) | 1169 |
| MspI | CCGG | 1 cut(s) | 1067 |
| MunI | CAATTG | 1 cut(s) | 1020 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 803, 1087, 1180 |
| NcoI | CCATGG | 2 cut(s) | 415, 1106 |
| NdeII | GATC | 8 cut(s) | 251, 453, 553, 741, 894, 946, 1192, 1370 |
| NlaIII | CATG | 7 cut(s) | 26, 38, 368, 419, 961, 1110, 1245 |
| NlaIV | GGNNCC | 2 cut(s) | 1269, 1372 |
| NmuCI | GTSAC | 6 cut(s) | 166, 370, 394, 598, 1260, 1330 |
| PagI | TCATGA | 2 cut(s) | 22, 364 |
| PdmI | GAANNNNTTC | 2 cut(s) | 18, 210 |
| PfeI | GAWTC | 3 cut(s) | 103, 1127, 1364 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1025 |
| PkrI | GCNGC | 7 cut(s) | 8, 78, 423, 796, 799, 1182, 1185 |
| PleI | GAGTC | 2 cut(s) | 355, 775 |
| PpsI | GAGTC | 2 cut(s) | 355, 775 |
| PspFI | CCCAGC | 1 cut(s) | 1375 |
| PspN4I | GGNNCC | 2 cut(s) | 1269, 1372 |
| PspPI | GGNCC | 1 cut(s) | 1300 |
| PstI | CTGCAG | 1 cut(s) | 799 |
| PstNI | CAGNNNCTG | 1 cut(s) | 838 |
| PsuI | RGATCY | 4 cut(s) | 741, 946, 1192, 1370 |
| PvuII | CAGCTG | 1 cut(s) | 1090 |
| RsaI | GTAC | 1 cut(s) | 1200 |
| RsaNI | GTAC | 1 cut(s) | 1199 |
| SaqAI | TTAA | 6 cut(s) | 624, 734, 747, 810, 1170, 1383 |
| SatI | GCNGC | 7 cut(s) | 7, 77, 422, 795, 798, 1181, 1184 |
| Sau3AI | GATC | 8 cut(s) | 251, 453, 553, 741, 894, 946, 1192, 1370 |
| Sau96I | GGNCC | 1 cut(s) | 1300 |
| SchI | GAGTC | 2 cut(s) | 355, 776 |
| SetI | ASST | 9 cut(s) | 85, 234, 372, 453, 498, 675, 796, 1092, 1105 |
| SfaNI | GCATC | 3 cut(s) | 99, 514, 1130 |
| SfcI | CTRYAG | 1 cut(s) | 795 |
| SmlI | CTYRAG | 1 cut(s) | 1169 |
| SmoI | CTYRAG | 1 cut(s) | 1169 |
| SpeI | ACTAGT | 1 cut(s) | 827 |
| SspMI | CTAG | 3 cut(s) | 678, 828, 867 |
| StyI | CCWWGG | 2 cut(s) | 415, 1106 |
| TaaI | ACNGT | 5 cut(s) | 227, 461, 570, 1160, 1260 |
| TaiI | ACGT | 1 cut(s) | 1105 |
| TaqI | TCGA | 2 cut(s) | 456, 1145 |
| TaqII | GACCGA | 1 cut(s) | 617 |
| TatI | WGTACW | 1 cut(s) | 1198 |
| TfiI | GAWTC | 3 cut(s) | 103, 1127, 1364 |
| Tru1I | TTAA | 6 cut(s) | 624, 734, 747, 810, 1170, 1383 |
| Tru9I | TTAA | 6 cut(s) | 624, 734, 747, 810, 1170, 1383 |
| TseFI | GTSAC | 6 cut(s) | 166, 370, 394, 598, 1260, 1330 |
| TseI | GCWGC | 7 cut(s) | 6, 76, 421, 794, 797, 1180, 1183 |
| Tsp45I | GTSAC | 6 cut(s) | 166, 370, 394, 598, 1260, 1330 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1025 |
| Vha464I | CTTAAG | 1 cut(s) | 1169 |
| XapI | RAATTY | 3 cut(s) | 14, 122, 633 |
| XmnI | GAANNNNTTC | 2 cut(s) | 18, 210 |
| XspI | CTAG | 3 cut(s) | 678, 828, 867 |