Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8193150.1

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

25 .. 666

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8193150.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgaaactgcgctcgtgcagccaagctgcatcgcaatctgaacctgatgttttgatagtgggactattgcctcaaacaacaaaagagctgccacagaaacagctgctgccccatatgaaactacactcaggcagccaagctgcatcgcaatctgaacccgatgtttcgatgattgatacgttgcccgcagagcaccattctgagcagccacaagaacagaagcatcctaagtggccacagaagcaaagagggaggactcctaaaccaaaactggatagagctgggcctgttaagcgtcaacagctgcaggaacaaccaaaaagacgagggaggccccgtaagttggatgtaaatactatatcagggagaaaattgatctcaaagaacaaacagaagcaaccaaagagtccagggaaggcaaaatctcgaaaagtgatcaaaggaaaactacagagtcaagtgaggggaaagcctcaaaaagtgactcaaggaacaccaaagagtcaagtgaggggaaagcctcaaaaagtgactcaaggaacaccaaagagtcaagtgaggggaaggcttcaaaaaatgtctgaagaaacagtaaagagtcaagttagggagagggctcgagaagtgactgaaggaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.94

Weight (kDa)

11.01

Isoelectric Point (pI)

61.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	603
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	6 cut(s)	26, 88, 103, 140, 281, 304
AluI	AGCT	6 cut(s)	26, 88, 103, 140, 281, 304
Alw21I	GWGCWC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	618
AoxI	GGCC	3 cut(s)	233, 284, 332
ApeKI	GCWGC	9 cut(s)	18, 26, 88, 103, 106, 132, 140, 205, 304
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	284, 333
AvaI	CYCGRG	1 cut(s)	618
BalI	TGGCCA	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	619
BauI	CACGAG	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	9 cut(s)	13, 30, 75, 90, 93, 127, 144, 217, 291
BciT130I	CCWGG	1 cut(s)	411
BclI	TGATCA	1 cut(s)	435
BfmI	CTRYAG	2 cut(s)	305, 449
BisI	GCNGC	9 cut(s)	19, 27, 89, 104, 107, 133, 141, 206, 305
BlsI	GCNGC	9 cut(s)	20, 28, 90, 105, 108, 134, 142, 207, 306
Bme1390I	CCNGG	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	618
BmgT120I	GGNCC	2 cut(s)	284, 333
BmiI	GGNNCC	2 cut(s)	335, 637
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	3 cut(s)	38, 152, 232
BpuEI	CTTGAG	2 cut(s)	471, 519
BsaJI	CCNNGG	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	2 cut(s)	223, 352
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	141, 192
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	9 cut(s)	13, 30, 75, 90, 93, 127, 144, 217, 291
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	235, 286, 334
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	618
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	3 cut(s)	235, 286, 334
BsoBI	CYCGRG	1 cut(s)	618
Bsp1286I	GDGCHC	2 cut(s)	195, 619
Bsp143I	GATC	2 cut(s)	375, 435
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	3 cut(s)	235, 286, 334
BspCNI	CTCAG	2 cut(s)	140, 193
BspLI	GGNNCC	2 cut(s)	335, 637
BspMAI	CTGCAG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	375, 435
BssSI	CACGAG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	127, 201, 228
BstF5I	GGATG	2 cut(s)	223, 352
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	2 cut(s)	378, 438
BstMBI	GATC	2 cut(s)	375, 435
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 190, 241, 292, 301
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	2 cut(s)	305, 449
BstV1I	GCAGC	9 cut(s)	13, 30, 75, 90, 93, 127, 144, 217, 291
BsuRI	GGCC	3 cut(s)	235, 286, 334
BtgZI	GCGATG	2 cut(s)	15, 129
BtsCI	GGATG	2 cut(s)	223, 352
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	106
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	284, 333
CseI	GACGC	1 cut(s)	284
DdeI	CTNAG	3 cut(s)	127, 201, 228
DpnI	GATC	2 cut(s)	377, 437
DpnII	GATC	2 cut(s)	375, 435
EaeI	YGGCCR	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	619
FaiI	YATR	3 cut(s)	114, 116, 359
FaqI	GGGAC	1 cut(s)	75
FauI	CCCGC	1 cut(s)	193
FauNDI	CATATG	1 cut(s)	114
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	9 cut(s)	19, 27, 89, 104, 107, 133, 141, 206, 305
FokI	GGATG	2 cut(s)	210, 359
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	9 cut(s)	19, 27, 89, 104, 107, 133, 141, 206, 305
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	9 cut(s)	19, 27, 89, 104, 107, 133, 141, 206, 305
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	235, 286, 334
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	8 cut(s)	256, 406, 454, 484, 502, 532, 550, 598
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	4 cut(s)	40, 154, 202, 583
Hpy188III	TCNNGA	2 cut(s)	426, 620
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	409, 558, 626
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	4 cut(s)	18, 29, 143, 307
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 190, 241, 292, 301
HpyF3I	CTNAG	3 cut(s)	127, 201, 228
HpySE526I	ACGT	1 cut(s)	179
HspAI	GCGC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	2 cut(s)	375, 435
LpnPI	CCDG	9 cut(s)	57, 114, 257, 267, 293, 300, 348, 396, 423
Lsp1109I	GCAGC	9 cut(s)	13, 30, 75, 90, 93, 127, 144, 217, 291
LweI	GCATC	3 cut(s)	38, 152, 232
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	3 cut(s)	481, 529, 625
MalI	GATC	2 cut(s)	377, 437
MboI	GATC	2 cut(s)	375, 435
MboII	GAAGA	1 cut(s)	596
MhlI	GDGCHC	2 cut(s)	195, 619
MlsI	TGGCCA	1 cut(s)	235
MluCI	AATT	1 cut(s)	371
MluNI	TGGCCA	1 cut(s)	235
MlyI	GAGTC	8 cut(s)	250, 415, 463, 478, 511, 526, 559, 607
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	235
MspA1I	CMGCKG	2 cut(s)	103, 304
MspR9I	CCNGG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	5 cut(s)	18, 190, 241, 292, 301
NdeI	CATATG	1 cut(s)	114
NdeII	GATC	2 cut(s)	375, 435
NlaIV	GGNNCC	2 cut(s)	335, 637
NmuCI	GTSAC	3 cut(s)	481, 529, 625
PaeR7I	CTCGAG	1 cut(s)	618
PkrI	GCNGC	9 cut(s)	20, 28, 90, 105, 108, 134, 142, 207, 306
PleI	GAGTC	8 cut(s)	250, 414, 462, 478, 510, 526, 558, 606
PpsI	GAGTC	8 cut(s)	250, 414, 462, 478, 510, 526, 558, 606
Psp6I	CCWGG	1 cut(s)	409
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	2 cut(s)	335, 637
PspPI	GGNCC	2 cut(s)	284, 333
PstI	CTGCAG	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	106
PvuII	CAGCTG	2 cut(s)	103, 304
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	9 cut(s)	19, 27, 89, 104, 107, 133, 141, 206, 305
Sau3AI	GATC	2 cut(s)	375, 435
Sau96I	GGNCC	2 cut(s)	284, 333
SchI	GAGTC	8 cut(s)	250, 415, 463, 478, 511, 526, 559, 607
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	195, 619
SetI	ASST	9 cut(s)	28, 46, 90, 105, 142, 182, 283, 306, 641
SfaNI	GCATC	3 cut(s)	38, 152, 232
SfcI	CTRYAG	2 cut(s)	305, 449
Sfr274I	CTCGAG	1 cut(s)	618
SlaI	CTCGAG	1 cut(s)	618
SmlI	CTYRAG	3 cut(s)	486, 534, 618
SmoI	CTYRAG	3 cut(s)	486, 534, 618
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	3 cut(s)	167, 427, 619
TasI	AATT	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseFI	GTSAC	3 cut(s)	481, 529, 625
TseI	GCWGC	9 cut(s)	18, 26, 88, 103, 106, 132, 140, 205, 304
Tsp45I	GTSAC	3 cut(s)	481, 529, 625
TspDTI	ATGAA	2 cut(s)	17, 131
XhoI	CTCGAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.