Domain in histone families 1 and 5
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1391 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 884 |
| AciI | CCGC | 1 cut(s) | 1540 |
| AclWI | GGATC | 7 cut(s) | 244, 598, 761, 813, 1046, 1234, 1247 |
| AcsI | RAATTY | 3 cut(s) | 86, 492, 1489 |
| AcuI | CTGAAG | 3 cut(s) | 429, 752, 1313 |
| AfaI | GTAC | 3 cut(s) | 1059, 1436, 1453 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 884, 1165 |
| AflII | CTTAAG | 1 cut(s) | 1028 |
| AhlI | ACTAGT | 1 cut(s) | 686 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 871, 903 |
| AluBI | AGCT | 5 cut(s) | 532, 653, 949, 1327, 1477 |
| AluI | AGCT | 5 cut(s) | 532, 653, 949, 1327, 1477 |
| Alw26I | GTCTC | 2 cut(s) | 571, 1467 |
| AlwI | GGATC | 7 cut(s) | 244, 598, 761, 813, 1046, 1234, 1247 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 697 |
| Ama87I | CYCGRG | 2 cut(s) | 1162, 1350 |
| AoxI | GGCC | 2 cut(s) | 1167, 1315 |
| ApeKI | GCWGC | 7 cut(s) | 40, 653, 656, 1039, 1042, 1327, 1330 |
| ApoI | RAATTY | 3 cut(s) | 86, 492, 1489 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 195 |
| AspLEI | GCGC | 1 cut(s) | 406 |
| AspS9I | GGNCC | 2 cut(s) | 1167, 1580 |
| AsuHPI | GGTGA | 4 cut(s) | 59, 229, 1214, 1401 |
| AvaI | CYCGRG | 2 cut(s) | 1162, 1350 |
| AvaII | GGWCC | 1 cut(s) | 1580 |
| BamHI | GGATCC | 1 cut(s) | 1239 |
| BauI | CACGAG | 1 cut(s) | 817 |
| BbsI | GAAGAC | 1 cut(s) | 914 |
| BbvCI | CCTCAGC | 1 cut(s) | 950 |
| BbvI | GCAGC | 7 cut(s) | 52, 640, 668, 1051, 1054, 1314, 1342 |
| BcoDI | GTCTC | 2 cut(s) | 571, 1467 |
| BcuI | ACTAGT | 1 cut(s) | 686 |
| BfaI | CTAG | 4 cut(s) | 687, 726, 1389, 1605 |
| BfmI | CTRYAG | 4 cut(s) | 38, 357, 654, 1328 |
| BfoI | RGCGCY | 1 cut(s) | 407 |
| BfrI | CTTAAG | 1 cut(s) | 1028 |
| BfuAI | ACCTGC | 1 cut(s) | 1391 |
| BglII | AGATCT | 2 cut(s) | 1346, 1391 |
| BisI | GCNGC | 7 cut(s) | 41, 654, 657, 1040, 1043, 1328, 1331 |
| BlsI | GCNGC | 7 cut(s) | 42, 655, 658, 1041, 1044, 1329, 1332 |
| BmcAI | AGTACT | 1 cut(s) | 1453 |
| Bme18I | GGWCC | 1 cut(s) | 1580 |
| BmeT110I | CYCGRG | 2 cut(s) | 1162, 1350 |
| BmgT120I | GGNCC | 2 cut(s) | 1167, 1580 |
| BmiI | GGNNCC | 3 cut(s) | 192, 1136, 1241 |
| BmsI | GCATC | 3 cut(s) | 373, 989, 1554 |
| BpiI | GAAGAC | 1 cut(s) | 914 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 551, 583 |
| Bpu10I | CCTNAGC | 1 cut(s) | 950 |
| BpuEI | CTTGAG | 1 cut(s) | 1449 |
| BsaI | GGTCTC | 1 cut(s) | 1467 |
| BsaJI | CCNNGG | 2 cut(s) | 965, 1163 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 884, 1165 |
| Bse1I | ACTGG | 1 cut(s) | 1055 |
| Bse3DI | GCAATG | 2 cut(s) | 455, 660 |
| BseDI | CCNNGG | 2 cut(s) | 965, 1163 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 884, 1165 |
| BseMI | GCAATG | 2 cut(s) | 455, 660 |
| BseMII | CTCAG | 3 cut(s) | 303, 582, 941 |
| BseNI | ACTGG | 1 cut(s) | 1055 |
| BseRI | GAGGAG | 2 cut(s) | 134, 669 |
| BseXI | GCAGC | 7 cut(s) | 52, 640, 668, 1051, 1054, 1314, 1342 |
| BseYI | CCCAGC | 2 cut(s) | 1251, 1477 |
| BshFI | GGCC | 2 cut(s) | 1169, 1317 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1162, 1350 |
| BsiSI | CCGG | 1 cut(s) | 926 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 884, 1165 |
| BsmAI | GTCTC | 2 cut(s) | 571, 1467 |
| BsnI | GGCC | 2 cut(s) | 1169, 1317 |
| Bso31I | GGTCTC | 1 cut(s) | 1467 |
| BsoBI | CYCGRG | 2 cut(s) | 1162, 1350 |
| Bsp19I | CCATGG | 1 cut(s) | 965 |
| BspACI | CCGC | 1 cut(s) | 1540 |
| BspANI | GGCC | 2 cut(s) | 1169, 1317 |
| BspCNI | CTCAG | 3 cut(s) | 304, 581, 942 |
| BspHI | TCATGA | 1 cut(s) | 349 |
| BspLI | GGNNCC | 3 cut(s) | 192, 1136, 1241 |
| BspMAI | CTGCAG | 3 cut(s) | 42, 658, 1332 |
| BspMI | ACCTGC | 1 cut(s) | 1391 |
| BspPI | GGATC | 7 cut(s) | 244, 598, 761, 813, 1046, 1234, 1247 |
| BspTI | CTTAAG | 1 cut(s) | 1028 |
| BspTNI | GGTCTC | 1 cut(s) | 1467 |
| BsrDI | GCAATG | 2 cut(s) | 455, 660 |
| BsrI | ACTGG | 1 cut(s) | 1055 |
| BssECI | CCNNGG | 2 cut(s) | 965, 1163 |
| BssSI | CACGAG | 1 cut(s) | 817 |
| BssT1I | CCWWGG | 1 cut(s) | 965 |
| Bst2BI | CACGAG | 1 cut(s) | 817 |
| Bst4CI | ACNGT | 7 cut(s) | 212, 429, 1019, 1127, 1365, 1526, 1617 |
| Bst6I | CTCTTC | 2 cut(s) | 513, 1289 |
| BstAFI | CTTAAG | 1 cut(s) | 1028 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 662 |
| BstDEI | CTNAG | 5 cut(s) | 312, 568, 859, 950, 1343 |
| BstDSI | CCRYGG | 1 cut(s) | 965 |
| BstH2I | RGCGCY | 1 cut(s) | 407 |
| BstHHI | GCGC | 1 cut(s) | 406 |
| BstMAI | GTCTC | 2 cut(s) | 571, 1467 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 662, 946, 1039, 1336 |
| BstSFI | CTRYAG | 4 cut(s) | 38, 357, 654, 1328 |
| BstV1I | GCAGC | 7 cut(s) | 52, 640, 668, 1051, 1054, 1314, 1342 |
| BstV2I | GAAGAC | 1 cut(s) | 914 |
| BstX2I | RGATCY | 6 cut(s) | 603, 805, 1051, 1239, 1346, 1391 |
| BstYI | RGATCY | 6 cut(s) | 603, 805, 1051, 1239, 1346, 1391 |
| BsuRI | GGCC | 2 cut(s) | 1169, 1317 |
| BtgI | CCRYGG | 1 cut(s) | 965 |
| BtsIMutI | CAGTG | 1 cut(s) | 1522 |
| BveI | ACCTGC | 1 cut(s) | 1391 |
| CaiI | CAGNNNCTG | 1 cut(s) | 697 |
| CciI | TCATGA | 1 cut(s) | 349 |
| CfoI | GCGC | 1 cut(s) | 406 |
| Cfr13I | GGNCC | 2 cut(s) | 1167, 1580 |
| Csp6I | GTAC | 3 cut(s) | 1058, 1435, 1452 |
| CviAII | CATG | 3 cut(s) | 350, 966, 1109 |
| CviQI | GTAC | 3 cut(s) | 1058, 1435, 1452 |
| DdeI | CTNAG | 5 cut(s) | 312, 568, 859, 950, 1343 |
| Eam1104I | CTCTTC | 2 cut(s) | 513, 1289 |
| EarI | CTCTTC | 2 cut(s) | 513, 1289 |
| Eco130I | CCWWGG | 1 cut(s) | 965 |
| Eco31I | GGTCTC | 1 cut(s) | 1467 |
| Eco32I | GATATC | 1 cut(s) | 325 |
| Eco47I | GGWCC | 1 cut(s) | 1580 |
| Eco57I | CTGAAG | 3 cut(s) | 429, 752, 1313 |
| Eco88I | CYCGRG | 2 cut(s) | 1162, 1350 |
| EcoRV | GATATC | 1 cut(s) | 325 |
| EcoT14I | CCWWGG | 1 cut(s) | 965 |
| ErhI | CCWWGG | 1 cut(s) | 965 |
| FaeI | CATG | 3 cut(s) | 353, 969, 1112 |
| FatI | CATG | 3 cut(s) | 349, 965, 1108 |
| FauI | CCCGC | 1 cut(s) | 1533 |
| Fnu4HI | GCNGC | 7 cut(s) | 41, 654, 657, 1040, 1043, 1328, 1331 |
| Fsp4HI | GCNGC | 7 cut(s) | 41, 654, 657, 1040, 1043, 1328, 1331 |
| FspBI | CTAG | 4 cut(s) | 687, 726, 1389, 1605 |
| GlaI | GCGC | 1 cut(s) | 405 |
| GluI | GCNGC | 7 cut(s) | 41, 654, 657, 1040, 1043, 1328, 1331 |
| GsaI | CCCAGC | 2 cut(s) | 1255, 1481 |
| HaeII | RGCGCY | 1 cut(s) | 407 |
| HaeIII | GGCC | 2 cut(s) | 1169, 1317 |
| HapII | CCGG | 1 cut(s) | 926 |
| HhaI | GCGC | 1 cut(s) | 406 |
| Hin1II | CATG | 3 cut(s) | 353, 969, 1112 |
| Hin6I | GCGC | 1 cut(s) | 404 |
| HinP1I | GCGC | 1 cut(s) | 404 |
| HinfI | GANTC | 4 cut(s) | 67, 346, 986, 1233 |
| HpaII | CCGG | 1 cut(s) | 926 |
| HphI | GGTGA | 4 cut(s) | 59, 229, 1214, 1401 |
| Hpy166II | GTNNAC | 2 cut(s) | 176, 1376 |
| Hpy188I | TCNGA | 8 cut(s) | 66, 72, 571, 693, 985, 991, 1369, 1621 |
| Hpy8I | GTNNAC | 2 cut(s) | 176, 1376 |
| HpyAV | CCTTC | 2 cut(s) | 895, 1223 |
| HpyCH4III | ACNGT | 7 cut(s) | 212, 429, 1019, 1127, 1365, 1526, 1617 |
| HpyCH4IV | ACGT | 1 cut(s) | 961 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 662, 946, 1039, 1336 |
| HpyF3I | CTNAG | 5 cut(s) | 312, 568, 859, 950, 1343 |
| HpySE526I | ACGT | 1 cut(s) | 961 |
| Hsp92II | CATG | 3 cut(s) | 353, 969, 1112 |
| HspAI | GCGC | 1 cut(s) | 404 |
| LmnI | GCTCC | 1 cut(s) | 1036 |
| Lsp1109I | GCAGC | 7 cut(s) | 52, 640, 668, 1051, 1054, 1314, 1342 |
| LweI | GCATC | 3 cut(s) | 373, 989, 1554 |
| MaeI | CTAG | 4 cut(s) | 687, 726, 1389, 1605 |
| MaeII | ACGT | 1 cut(s) | 961 |
| MaeIII | GTNAC | 8 cut(s) | 130, 151, 304, 457, 1127, 1193, 1270, 1381 |
| MboII | GAAGA | 8 cut(s) | 422, 434, 476, 530, 613, 914, 1306, 1516 |
| MfeI | CAATTG | 3 cut(s) | 879, 1439, 1499 |
| MflI | RGATCY | 6 cut(s) | 603, 805, 1051, 1239, 1346, 1391 |
| MlyI | GAGTC | 1 cut(s) | 340 |
| MmeI | TCCRAC | 1 cut(s) | 783 |
| MroXI | GAANNNNTTC | 1 cut(s) | 195 |
| MseI | TTAA | 5 cut(s) | 483, 609, 669, 1029, 1259 |
| MspA1I | CMGCKG | 2 cut(s) | 949, 1327 |
| MspCI | CTTAAG | 1 cut(s) | 1028 |
| MspI | CCGG | 1 cut(s) | 926 |
| MunI | CAATTG | 3 cut(s) | 879, 1439, 1499 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 662, 946, 1039, 1336 |
| NcoI | CCATGG | 1 cut(s) | 965 |
| NlaIII | CATG | 3 cut(s) | 353, 969, 1112 |
| NlaIV | GGNNCC | 3 cut(s) | 192, 1136, 1241 |
| NmuCI | GTSAC | 3 cut(s) | 130, 151, 457 |
| PaeR7I | CTCGAG | 1 cut(s) | 1350 |
| PagI | TCATGA | 1 cut(s) | 349 |
| PdmI | GAANNNNTTC | 1 cut(s) | 195 |
| PfeI | GAWTC | 3 cut(s) | 67, 986, 1233 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 884 |
| PkrI | GCNGC | 7 cut(s) | 42, 655, 658, 1041, 1044, 1329, 1332 |
| PleI | GAGTC | 1 cut(s) | 340 |
| PpsI | GAGTC | 1 cut(s) | 340 |
| PspFI | CCCAGC | 2 cut(s) | 1251, 1477 |
| PspN4I | GGNNCC | 3 cut(s) | 192, 1136, 1241 |
| PspPI | GGNCC | 2 cut(s) | 1167, 1580 |
| PstI | CTGCAG | 3 cut(s) | 42, 658, 1332 |
| PstNI | CAGNNNCTG | 1 cut(s) | 697 |
| PsuI | RGATCY | 6 cut(s) | 603, 805, 1051, 1239, 1346, 1391 |
| PvuII | CAGCTG | 2 cut(s) | 949, 1327 |
| RsaI | GTAC | 3 cut(s) | 1059, 1436, 1453 |
| RsaNI | GTAC | 3 cut(s) | 1058, 1435, 1452 |
| SaqAI | TTAA | 5 cut(s) | 483, 609, 669, 1029, 1259 |
| SatI | GCNGC | 7 cut(s) | 41, 654, 657, 1040, 1043, 1328, 1331 |
| Sau96I | GGNCC | 2 cut(s) | 1167, 1580 |
| ScaI | AGTACT | 1 cut(s) | 1453 |
| SchI | GAGTC | 1 cut(s) | 340 |
| SfaNI | GCATC | 3 cut(s) | 373, 989, 1554 |
| SfcI | CTRYAG | 4 cut(s) | 38, 357, 654, 1328 |
| Sfr274I | CTCGAG | 1 cut(s) | 1350 |
| SinI | GGWCC | 1 cut(s) | 1580 |
| SlaI | CTCGAG | 1 cut(s) | 1350 |
| SmlI | CTYRAG | 3 cut(s) | 1028, 1350, 1464 |
| SmoI | CTYRAG | 3 cut(s) | 1028, 1350, 1464 |
| SpeI | ACTAGT | 1 cut(s) | 686 |
| SsiI | CCGC | 1 cut(s) | 1540 |
| SspMI | CTAG | 4 cut(s) | 687, 726, 1389, 1605 |
| StyI | CCWWGG | 1 cut(s) | 965 |
| TaaI | ACNGT | 7 cut(s) | 212, 429, 1019, 1127, 1365, 1526, 1617 |
| TaiI | ACGT | 1 cut(s) | 964 |
| TaqI | TCGA | 2 cut(s) | 1004, 1351 |
| TaqII | GACCGA | 1 cut(s) | 476 |
| TatI | WGTACW | 2 cut(s) | 1057, 1451 |
| TfiI | GAWTC | 3 cut(s) | 67, 986, 1233 |
| Tru1I | TTAA | 5 cut(s) | 483, 609, 669, 1029, 1259 |
| Tru9I | TTAA | 5 cut(s) | 483, 609, 669, 1029, 1259 |
| TscAI | CASTG | 1 cut(s) | 1529 |
| TseFI | GTSAC | 3 cut(s) | 130, 151, 457 |
| TseI | GCWGC | 7 cut(s) | 40, 653, 656, 1039, 1042, 1327, 1330 |
| Tsp45I | GTSAC | 3 cut(s) | 130, 151, 457 |
| TspDTI | ATGAA | 7 cut(s) | 270, 282, 702, 950, 1023, 1395, 1482 |
| TspRI | CASTG | 1 cut(s) | 1529 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 884 |
| Vha464I | CTTAAG | 1 cut(s) | 1028 |
| VpaK11BI | GGWCC | 1 cut(s) | 1580 |
| XapI | RAATTY | 3 cut(s) | 86, 492, 1489 |
| XhoI | CTCGAG | 1 cut(s) | 1350 |
| XmnI | GAANNNNTTC | 1 cut(s) | 195 |
| XspI | CTAG | 4 cut(s) | 687, 726, 1389, 1605 |
| ZrmI | AGTACT | 1 cut(s) | 1453 |