Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

21456143 .. 21456475

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG227000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAGCTTGATCATAAACCAACAGAGCAGAGGCAATTGCGCCCATGTTGCCAGAGGTGCTCCAAGTTTGAATTGTCTCTCACTACATCTATGGTCGAATTATCACCAAGAAAAAATCAGGATACTGAAAGGCAAACAGAGGAAAAGACTGGAGAGCTGAAGACATCACTGGAGGAAACAGGCCAAGGACAGCTGCAGCAGAGGCAGCTTGGAACGAGAAGCAAAAACCTGTCTGAATCCAAGCATTCATTGCTTTCAAACACTGGAATGTCACAAGGGATCAGCCAGGAGCCGAAAATTCATCTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

103

Amino Acids

11.75

Weight (kDa)

8.91

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	71, 258
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	4 cut(s)	7, 157, 193, 208
AluI	AGCT	4 cut(s)	7, 157, 193, 208
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	3 cut(s)	193, 196, 205
ApoI	RAATTY	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	3 cut(s)	180, 208, 217
BciT130I	CCWGG	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	115
BisI	GCNGC	3 cut(s)	194, 197, 206
BlsI	GCNGC	3 cut(s)	195, 198, 207
Bme1390I	CCNGG	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	167
BpmI	CTGGAG	2 cut(s)	171, 191
BsaJI	CCNNGG	1 cut(s)	184
Bse1I	ACTGG	3 cut(s)	154, 174, 268
Bse3DI	GCAATG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	248
BseNI	ACTGG	3 cut(s)	154, 174, 268
BseXI	GCAGC	3 cut(s)	180, 208, 217
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	10, 279
BspANI	GGCC	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	198
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	154, 174, 268
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	10, 279
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	2 cut(s)	13, 282
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	10, 279
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 57, 202, 205, 250
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	180, 208, 217
BstV2I	GAAGAC	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	167, 261
CfoI	GCGC	1 cut(s)	42
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	7 cut(s)	7, 157, 183, 193, 208, 285, 292
CviKI_1	RGCY	7 cut(s)	7, 157, 183, 193, 208, 285, 292
DpnI	GATC	2 cut(s)	12, 281
DpnII	GATC	2 cut(s)	10, 279
Eco130I	CCWWGG	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	1 cut(s)	48
FaiI	YATR	3 cut(s)	15, 46, 92
FatI	CATG	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	3 cut(s)	194, 197, 206
Fsp4HI	GCNGC	3 cut(s)	194, 197, 206
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	3 cut(s)	194, 197, 206
GsuI	CTGGAG	2 cut(s)	171, 191
HaeIII	GGCC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	1 cut(s)	236
HphI	GGTGA	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 57, 202, 205, 250
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	10, 279
LmnI	GCTCC	2 cut(s)	65, 289
LpnPI	CCDG	9 cut(s)	65, 104, 135, 155, 165, 242, 249, 272, 299
Lsp1109I	GCAGC	3 cut(s)	180, 208, 217
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	2 cut(s)	12, 281
MboI	GATC	2 cut(s)	10, 279
MboII	GAAGA	1 cut(s)	172
MfeI	CAATTG	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	4 cut(s)	35, 71, 98, 297
MnlI	CCTC	5 cut(s)	24, 48, 133, 166, 195
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	5 cut(s)	48, 57, 202, 205, 250
NdeII	GATC	2 cut(s)	10, 279
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	270
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	195, 198, 207
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	266
SatI	GCNGC	3 cut(s)	194, 197, 206
Sau3AI	GATC	2 cut(s)	10, 279
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	6 cut(s)	9, 59, 159, 195, 210, 231
SfcI	CTRYAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	4 cut(s)	35, 71, 98, 297
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	184
TaqI	TCGA	1 cut(s)	96
TasI	AATT	4 cut(s)	35, 71, 98, 297
TfiI	GAWTC	1 cut(s)	236
TscAI	CASTG	2 cut(s)	174, 268
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	3 cut(s)	193, 196, 205
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	3 cut(s)	17, 237, 290
TspRI	CASTG	2 cut(s)	174, 268
XapI	RAATTY	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.