Domain in histone families 1 and 5
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Linker_histone | PF00538 | 46 - 107 | 1.7e-10 | linker histone H1 and H5 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 576, 3903 |
| AatII | GACGTC | 1 cut(s) | 100 |
| AbsI | CCTCGAGG | 1 cut(s) | 3291 |
| Acc16I | TGCGCA | 1 cut(s) | 1125 |
| Acc36I | ACCTGC | 1 cut(s) | 124 |
| AccB1I | GGYRCC | 2 cut(s) | 3334, 3432 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2195 |
| AccBSI | CCGCTC | 1 cut(s) | 2692 |
| AccI | GTMKAC | 1 cut(s) | 106 |
| AciI | CCGC | 9 cut(s) | 756, 1907, 2476, 2692, 2972, 3272, 3817, 4145, 4356 |
| AclI | AACGTT | 1 cut(s) | 1998 |
| AcoI | YGGCCR | 1 cut(s) | 4403 |
| AcsI | RAATTY | 7 cut(s) | 717, 751, 1056, 1949, 2461, 2535, 3620 |
| AcuI | CTGAAG | 8 cut(s) | 222, 2090, 2616, 2804, 3563, 3818, 3948, 4773 |
| AcyI | GRCGYC | 2 cut(s) | 97, 2945 |
| AdeI | CACNNNGTG | 1 cut(s) | 1645 |
| AfaI | GTAC | 5 cut(s) | 909, 1014, 1697, 2391, 3192 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 2195, 3728, 3779, 4513 |
| AflIII | ACRYGT | 2 cut(s) | 1264, 1433 |
| AjnI | CCWGG | 6 cut(s) | 958, 2783, 3670, 3721, 3772, 4579 |
| Alw21I | GWGCWC | 2 cut(s) | 3842, 4365 |
| Alw26I | GTCTC | 3 cut(s) | 3465, 3693, 3889 |
| Alw44I | GTGCAC | 1 cut(s) | 3838 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2026, 4159, 4162, 4276 |
| Ama87I | CYCGRG | 3 cut(s) | 3291, 3534, 4788 |
| AoxI | GGCC | 6 cut(s) | 2398, 2599, 3565, 4403, 4454, 4502 |
| ApaLI | GTGCAC | 1 cut(s) | 3838 |
| ApoI | RAATTY | 7 cut(s) | 717, 751, 1056, 1949, 2461, 2535, 3620 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1788, 2865, 3933 |
| AspLEI | GCGC | 3 cut(s) | 1126, 4182, 4281 |
| AspS9I | GGNCC | 8 cut(s) | 1799, 2198, 2398, 2519, 2697, 3947, 4454, 4503 |
| AsuC2I | CCSGG | 1 cut(s) | 3093 |
| AsuHPI | GGTGA | 7 cut(s) | 365, 670, 1315, 1531, 2950, 3194, 3480 |
| AsuII | TTCGAA | 2 cut(s) | 2158, 3595 |
| AsuNHI | GCTAGC | 1 cut(s) | 2308 |
| AvaI | CYCGRG | 3 cut(s) | 3291, 3534, 4788 |
| AvaII | GGWCC | 5 cut(s) | 1799, 2198, 2519, 2697, 3947 |
| AxyI | CCTNAGG | 1 cut(s) | 2394 |
| BaeGI | GKGCMC | 1 cut(s) | 3842 |
| BalI | TGGCCA | 1 cut(s) | 4405 |
| BamHI | GGATCC | 2 cut(s) | 2288, 4066 |
| BanI | GGYRCC | 2 cut(s) | 3334, 3432 |
| BanII | GRGCYC | 4 cut(s) | 3428, 3852, 3921, 4789 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 891, 923, 996, 1028 |
| BauI | CACGAG | 1 cut(s) | 2733 |
| BbsI | GAAGAC | 7 cut(s) | 266, 401, 2659, 2948, 3080, 3159, 3551 |
| Bbv12I | GWGCWC | 2 cut(s) | 3842, 4365 |
| BccI | CCATC | 7 cut(s) | 22, 1040, 2610, 3112, 3165, 3745, 3796 |
| BceAI | ACGGC | 3 cut(s) | 134, 2614, 3348 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3819, 3853 |
| BciT130I | CCWGG | 6 cut(s) | 960, 2785, 3672, 3723, 3774, 4581 |
| BciVI | GTATCC | 2 cut(s) | 2791, 3499 |
| BclI | TGATCA | 2 cut(s) | 3394, 4605 |
| BcnI | CCSGG | 1 cut(s) | 3093 |
| BcoDI | GTCTC | 3 cut(s) | 3465, 3693, 3889 |
| BfaI | CTAG | 6 cut(s) | 366, 2309, 2645, 3083, 3944, 4079 |
| BfmI | CTRYAG | 6 cut(s) | 1116, 1395, 3912, 4107, 4475, 4619 |
| BfuAI | ACCTGC | 1 cut(s) | 124 |
| BfuI | GTATCC | 2 cut(s) | 2791, 3499 |
| BglII | AGATCT | 1 cut(s) | 2262 |
| Bme1390I | CCNGG | 7 cut(s) | 960, 2785, 3093, 3672, 3723, 3774, 4581 |
| Bme18I | GGWCC | 5 cut(s) | 1799, 2198, 2519, 2697, 3947 |
| BmeT110I | CYCGRG | 3 cut(s) | 3291, 3534, 4788 |
| BmgT120I | GGNCC | 8 cut(s) | 1799, 2198, 2398, 2519, 2697, 3947, 4454, 4503 |
| BmiI | GGNNCC | 9 cut(s) | 2290, 2698, 2699, 3336, 3434, 3676, 4068, 4505, 4807 |
| BmrFI | CCNGG | 7 cut(s) | 960, 2785, 3093, 3672, 3723, 3774, 4581 |
| BmtI | GCTAGC | 1 cut(s) | 2312 |
| BpiI | GAAGAC | 7 cut(s) | 266, 401, 2659, 2948, 3080, 3159, 3551 |
| BpmI | CTGGAG | 8 cut(s) | 537, 876, 981, 1527, 3563, 3744, 3795, 3828 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2844, 3057 |
| Bpu14I | TTCGAA | 2 cut(s) | 2158, 3595 |
| BpuEI | CTTGAG | 5 cut(s) | 289, 3693, 3744, 4641, 4689 |
| BpuMI | CCSGG | 1 cut(s) | 3093 |
| BsaAI | YACGTR | 1 cut(s) | 1436 |
| BsaHI | GRCGYC | 2 cut(s) | 97, 2945 |
| BsaJI | CCNNGG | 4 cut(s) | 2328, 2374, 3428, 4580 |
| BsaWI | WCCGGW | 1 cut(s) | 70 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 294, 324, 535, 565, 954, 984, 1764, 1794 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 2195, 3728, 3779, 4513 |
| Bse1I | ACTGG | 5 cut(s) | 550, 2971, 3237, 3652, 4446 |
| Bse21I | CCTNAGG | 1 cut(s) | 2394 |
| BseBI | CCWGG | 6 cut(s) | 960, 2785, 3672, 3723, 3774, 4581 |
| BseDI | CCNNGG | 4 cut(s) | 2328, 2374, 3428, 4580 |
| BseGI | GGATG | 6 cut(s) | 136, 2602, 3013, 3154, 4393, 4522 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 2195, 3728, 3779, 4513 |
| BseNI | ACTGG | 5 cut(s) | 550, 2971, 3237, 3652, 4446 |
| BseRI | GAGGAG | 1 cut(s) | 188 |
| BseSI | GKGCMC | 1 cut(s) | 3842 |
| BseYI | CCCAGC | 4 cut(s) | 2292, 2700, 4050, 4451 |
| BsgI | GTGCAG | 6 cut(s) | 1299, 1455, 2027, 2069, 2111, 4148 |
| BshFI | GGCC | 6 cut(s) | 2400, 2601, 3567, 4405, 4456, 4504 |
| BshNI | GGYRCC | 2 cut(s) | 3334, 3432 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3842, 4365 |
| BsiHKCI | CYCGRG | 3 cut(s) | 3291, 3534, 4788 |
| BsiSI | CCGG | 2 cut(s) | 71, 3092 |
| BslFI | GGGAC | 6 cut(s) | 365, 761, 2633, 2710, 4128, 4245 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 2195, 3728, 3779, 4513 |
| BsmAI | GTCTC | 3 cut(s) | 3465, 3693, 3889 |
| BsmBI | CGTCTC | 2 cut(s) | 3693, 3889 |
| BsmFI | GGGAC | 6 cut(s) | 365, 761, 2633, 2710, 4128, 4245 |
| BsmI | GAATGC | 1 cut(s) | 3347 |
| BsnI | GGCC | 6 cut(s) | 2400, 2601, 3567, 4405, 4456, 4504 |
| BsoBI | CYCGRG | 3 cut(s) | 3291, 3534, 4788 |
| Bsp119I | TTCGAA | 2 cut(s) | 2158, 3595 |
| Bsp1286I | GDGCHC | 6 cut(s) | 3428, 3842, 3852, 3921, 4365, 4789 |
| Bsp1407I | TGTACA | 2 cut(s) | 907, 3190 |
| Bsp19I | CCATGG | 2 cut(s) | 2328, 3428 |
| BspACI | CCGC | 9 cut(s) | 756, 1907, 2476, 2692, 2972, 3272, 3817, 4145, 4356 |
| BspANI | GGCC | 6 cut(s) | 2400, 2601, 3567, 4405, 4456, 4504 |
| BspHI | TCATGA | 1 cut(s) | 2560 |
| BspLI | GGNNCC | 9 cut(s) | 2290, 2698, 2699, 3336, 3434, 3676, 4068, 4505, 4807 |
| BspMAI | CTGCAG | 3 cut(s) | 1399, 4111, 4479 |
| BspMI | ACCTGC | 1 cut(s) | 124 |
| BspOI | GCTAGC | 1 cut(s) | 2312 |
| BspQI | GCTCTTC | 2 cut(s) | 1224, 1497 |
| BspT104I | TTCGAA | 2 cut(s) | 2158, 3595 |
| BspT107I | GGYRCC | 2 cut(s) | 3334, 3432 |
| BsrBI | CCGCTC | 1 cut(s) | 2692 |
| BsrGI | TGTACA | 2 cut(s) | 907, 3190 |
| BsrI | ACTGG | 5 cut(s) | 550, 2971, 3237, 3652, 4446 |
| BssECI | CCNNGG | 4 cut(s) | 2328, 2374, 3428, 4580 |
| BssNI | GRCGYC | 2 cut(s) | 97, 2945 |
| BssSI | CACGAG | 1 cut(s) | 2733 |
| BssT1I | CCWWGG | 3 cut(s) | 2328, 2374, 3428 |
| Bst2BI | CACGAG | 1 cut(s) | 2733 |
| Bst2UI | CCWGG | 6 cut(s) | 960, 2785, 3672, 3723, 3774, 4581 |
| Bst6I | CTCTTC | 3 cut(s) | 1224, 1497, 2493 |
| BstACI | GRCGYC | 2 cut(s) | 97, 2945 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 2026, 2887, 2969, 4162 |
| BstAUI | TGTACA | 2 cut(s) | 907, 3190 |
| BstBAI | YACGTR | 1 cut(s) | 1436 |
| BstBI | TTCGAA | 2 cut(s) | 2158, 3595 |
| BstC8I | GCNNGC | 5 cut(s) | 15, 39, 2310, 3347, 4356 |
| BstDSI | CCRYGG | 2 cut(s) | 2328, 3428 |
| BstF5I | GGATG | 6 cut(s) | 136, 2602, 3013, 3154, 4393, 4522 |
| BstHHI | GCGC | 3 cut(s) | 1126, 4182, 4281 |
| BstMAI | GTCTC | 3 cut(s) | 3465, 3693, 3889 |
| BstNI | CCWGG | 6 cut(s) | 960, 2785, 3672, 3723, 3774, 4581 |
| BstNSI | RCATGY | 1 cut(s) | 1268 |
| BstSCI | CCNGG | 7 cut(s) | 958, 2783, 3091, 3670, 3721, 3772, 4579 |
| BstSFI | CTRYAG | 6 cut(s) | 1116, 1395, 3912, 4107, 4475, 4619 |
| BstSLI | GKGCMC | 1 cut(s) | 3842 |
| BstV2I | GAAGAC | 7 cut(s) | 266, 401, 2659, 2948, 3080, 3159, 3551 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2394 |
| BsuI | GTATCC | 2 cut(s) | 2791, 3499 |
| BsuRI | GGCC | 6 cut(s) | 2400, 2601, 3567, 4405, 4456, 4504 |
| BtgI | CCRYGG | 2 cut(s) | 2328, 3428 |
| BtgZI | GCGATG | 2 cut(s) | 4185, 4299 |
| BtsCI | GGATG | 6 cut(s) | 136, 2602, 3013, 3154, 4393, 4522 |
| BtsI | GCAGTG | 3 cut(s) | 1404, 4091, 4116 |
| BtsIMutI | CAGTG | 6 cut(s) | 1088, 1404, 2760, 3839, 4091, 4116 |
| BveI | ACCTGC | 1 cut(s) | 124 |
| Cac8I | GCNNGC | 5 cut(s) | 15, 39, 2310, 3347, 4356 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2026, 4159, 4162, 4276 |
| CciI | TCATGA | 1 cut(s) | 2560 |
| CfoI | GCGC | 3 cut(s) | 1126, 4182, 4281 |
| Cfr13I | GGNCC | 8 cut(s) | 1799, 2198, 2398, 2519, 2697, 3947, 4454, 4503 |
| CseI | GACGC | 3 cut(s) | 2342, 2953, 4454 |
| Csp6I | GTAC | 5 cut(s) | 908, 1013, 1696, 2390, 3191 |
| CviQI | GTAC | 5 cut(s) | 908, 1013, 1696, 2390, 3191 |
| DraI | TTTAAA | 1 cut(s) | 2352 |
| DraIII | CACNNNGTG | 1 cut(s) | 1645 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 576, 3903 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 576, 3903 |
| EaeI | YGGCCR | 1 cut(s) | 4403 |
| Eam1104I | CTCTTC | 3 cut(s) | 1224, 1497, 2493 |
| EarI | CTCTTC | 3 cut(s) | 1224, 1497, 2493 |
| Eco130I | CCWWGG | 3 cut(s) | 2328, 2374, 3428 |
| Eco24I | GRGCYC | 4 cut(s) | 3428, 3852, 3921, 4789 |
| Eco32I | GATATC | 2 cut(s) | 88, 3368 |
| Eco47I | GGWCC | 5 cut(s) | 1799, 2198, 2519, 2697, 3947 |
| Eco57I | CTGAAG | 8 cut(s) | 222, 2090, 2616, 2804, 3563, 3818, 3948, 4773 |
| Eco81I | CCTNAGG | 1 cut(s) | 2394 |
| Eco88I | CYCGRG | 3 cut(s) | 3291, 3534, 4788 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2697, 4503 |
| EcoRI | GAATTC | 2 cut(s) | 2535, 3620 |
| EcoRII | CCWGG | 6 cut(s) | 958, 2783, 3670, 3721, 3772, 4579 |
| EcoRV | GATATC | 2 cut(s) | 88, 3368 |
| EcoT14I | CCWWGG | 3 cut(s) | 2328, 2374, 3428 |
| EcoT38I | GRGCYC | 4 cut(s) | 3428, 3852, 3921, 4789 |
| ErhI | CCWWGG | 3 cut(s) | 2328, 2374, 3428 |
| Esp3I | CGTCTC | 2 cut(s) | 3693, 3889 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2850, 2882, 2910, 2942 |
| FaqI | GGGAC | 6 cut(s) | 365, 761, 2633, 2710, 4128, 4245 |
| FauI | CCCGC | 3 cut(s) | 2469, 2685, 4363 |
| FauNDI | CATATG | 3 cut(s) | 1164, 4170, 4284 |
| FbaI | TGATCA | 2 cut(s) | 3394, 4605 |
| FblI | GTMKAC | 1 cut(s) | 106 |
| FokI | GGATG | 6 cut(s) | 123, 2589, 3020, 3161, 4380, 4529 |
| FriOI | GRGCYC | 4 cut(s) | 3428, 3852, 3921, 4789 |
| FspBI | CTAG | 6 cut(s) | 366, 2309, 2645, 3083, 3944, 4079 |
| FspI | TGCGCA | 1 cut(s) | 1125 |
| GlaI | GCGC | 3 cut(s) | 1125, 4181, 4280 |
| GsaI | CCCAGC | 4 cut(s) | 2296, 2704, 4054, 4455 |
| GsuI | CTGGAG | 8 cut(s) | 537, 876, 981, 1527, 3563, 3744, 3795, 3828 |
| HaeIII | GGCC | 6 cut(s) | 2400, 2601, 3567, 4405, 4456, 4504 |
| HapII | CCGG | 2 cut(s) | 71, 3092 |
| HgaI | GACGC | 3 cut(s) | 2342, 2953, 4454 |
| HhaI | GCGC | 3 cut(s) | 1126, 4182, 4281 |
| Hin1I | GRCGYC | 2 cut(s) | 97, 2945 |
| Hin6I | GCGC | 3 cut(s) | 1124, 4180, 4279 |
| HinP1I | GCGC | 3 cut(s) | 1124, 4180, 4279 |
| HincII | GTYRAC | 5 cut(s) | 198, 535, 3814, 3995, 4469 |
| HindII | GTYRAC | 5 cut(s) | 198, 535, 3814, 3995, 4469 |
| HindIII | AAGCTT | 2 cut(s) | 11, 3389 |
| HpaI | GTTAAC | 1 cut(s) | 3814 |
| HpaII | CCGG | 2 cut(s) | 71, 3092 |
| HphI | GGTGA | 7 cut(s) | 365, 670, 1315, 1531, 2950, 3194, 3480 |
| Hpy166II | GTNNAC | 8 cut(s) | 107, 198, 535, 3098, 3814, 3840, 3995, 4469 |
| Hpy8I | GTNNAC | 8 cut(s) | 107, 198, 535, 3098, 3814, 3840, 3995, 4469 |
| Hpy99I | CGWCG | 1 cut(s) | 99 |
| HpyCH4IV | ACGT | 5 cut(s) | 97, 1435, 1998, 3286, 4349 |
| HpySE526I | ACGT | 5 cut(s) | 97, 1435, 1998, 3286, 4349 |
| Hsp92I | GRCGYC | 2 cut(s) | 97, 2945 |
| HspAI | GCGC | 3 cut(s) | 1124, 4180, 4279 |
| KflI | GGGWCCC | 1 cut(s) | 2697 |
| Ksp22I | TGATCA | 2 cut(s) | 3394, 4605 |
| KspAI | GTTAAC | 1 cut(s) | 3814 |
| LguI | GCTCTTC | 2 cut(s) | 1224, 1497 |
| LmnI | GCTCC | 6 cut(s) | 2974, 3125, 3352, 3582, 3674, 3970 |
| MaeI | CTAG | 6 cut(s) | 366, 2309, 2645, 3083, 3944, 4079 |
| MaeII | ACGT | 5 cut(s) | 97, 1435, 1998, 3286, 4349 |
| MbiI | CCGCTC | 1 cut(s) | 2692 |
| MfeI | CAATTG | 7 cut(s) | 168, 606, 1586, 1712, 3248, 3419, 4118 |
| MhlI | GDGCHC | 6 cut(s) | 3428, 3842, 3852, 3921, 4365, 4789 |
| MlsI | TGGCCA | 1 cut(s) | 4405 |
| MluNI | TGGCCA | 1 cut(s) | 4405 |
| MmeI | TCCRAC | 4 cut(s) | 365, 3709, 3760, 4494 |
| Mox20I | TGGCCA | 1 cut(s) | 4405 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1788, 2865, 3933 |
| MscI | TGGCCA | 1 cut(s) | 4405 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1301, 2045, 2087, 3340, 3857 |
| Msp20I | TGGCCA | 1 cut(s) | 4405 |
| MspA1I | CMGCKG | 5 cut(s) | 2296, 3308, 4106, 4159, 4474 |
| MspI | CCGG | 2 cut(s) | 71, 3092 |
| MspR9I | CCNGG | 7 cut(s) | 960, 2785, 3093, 3672, 3723, 3774, 4581 |
| MunI | CAATTG | 7 cut(s) | 168, 606, 1586, 1712, 3248, 3419, 4118 |
| Mva1269I | GAATGC | 1 cut(s) | 3347 |
| MvaI | CCWGG | 6 cut(s) | 960, 2785, 3672, 3723, 3774, 4581 |
| NciI | CCSGG | 1 cut(s) | 3093 |
| NcoI | CCATGG | 2 cut(s) | 2328, 3428 |
| NdeI | CATATG | 3 cut(s) | 1164, 4170, 4284 |
| NheI | GCTAGC | 1 cut(s) | 2308 |
| NlaIV | GGNNCC | 9 cut(s) | 2290, 2698, 2699, 3336, 3434, 3676, 4068, 4505, 4807 |
| NsbI | TGCGCA | 1 cut(s) | 1125 |
| NspI | RCATGY | 1 cut(s) | 1268 |
| NspV | TTCGAA | 2 cut(s) | 2158, 3595 |
| PaeR7I | CTCGAG | 3 cut(s) | 3291, 3534, 4788 |
| PagI | TCATGA | 1 cut(s) | 2560 |
| PciI | ACATGT | 1 cut(s) | 1264 |
| PciSI | GCTCTTC | 2 cut(s) | 1224, 1497 |
| PctI | GAATGC | 1 cut(s) | 3347 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1788, 2865, 3933 |
| PfeI | GAWTC | 7 cut(s) | 157, 356, 677, 2801, 3110, 3683, 3982 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2195 |
| PfoI | TCCNGGA | 1 cut(s) | 2783 |
| Ppu21I | YACGTR | 1 cut(s) | 1436 |
| PpuMI | RGGWCCY | 1 cut(s) | 2697 |
| PscI | ACATGT | 1 cut(s) | 1264 |
| Psp1406I | AACGTT | 1 cut(s) | 1998 |
| Psp5II | RGGWCCY | 1 cut(s) | 2697 |
| Psp6I | CCWGG | 6 cut(s) | 958, 2783, 3670, 3721, 3772, 4579 |
| PspFI | CCCAGC | 4 cut(s) | 2292, 2700, 4050, 4451 |
| PspGI | CCWGG | 6 cut(s) | 958, 2783, 3670, 3721, 3772, 4579 |
| PspN4I | GGNNCC | 9 cut(s) | 2290, 2698, 2699, 3336, 3434, 3676, 4068, 4505, 4807 |
| PspPI | GGNCC | 8 cut(s) | 1799, 2198, 2398, 2519, 2697, 3947, 4454, 4503 |
| PspPPI | RGGWCCY | 1 cut(s) | 2697 |
| PspXI | VCTCGAGB | 1 cut(s) | 3291 |
| PstI | CTGCAG | 3 cut(s) | 1399, 4111, 4479 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2026, 4159, 4162, 4276 |
| PvuII | CAGCTG | 5 cut(s) | 2296, 3308, 4106, 4159, 4474 |
| RsaI | GTAC | 5 cut(s) | 909, 1014, 1697, 2391, 3192 |
| RsaNI | GTAC | 5 cut(s) | 908, 1013, 1696, 2390, 3191 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1301, 2045, 2087, 3340, 3857 |
| SapI | GCTCTTC | 2 cut(s) | 1224, 1497 |
| Sau96I | GGNCC | 8 cut(s) | 1799, 2198, 2398, 2519, 2697, 3947, 4454, 4503 |
| ScrFI | CCNGG | 7 cut(s) | 960, 2785, 3093, 3672, 3723, 3774, 4581 |
| SduI | GDGCHC | 6 cut(s) | 3428, 3842, 3852, 3921, 4365, 4789 |
| SfcI | CTRYAG | 6 cut(s) | 1116, 1395, 3912, 4107, 4475, 4619 |
| Sfr274I | CTCGAG | 3 cut(s) | 3291, 3534, 4788 |
| SfuI | TTCGAA | 2 cut(s) | 2158, 3595 |
| SinI | GGWCC | 5 cut(s) | 1799, 2198, 2519, 2697, 3947 |
| SlaI | CTCGAG | 3 cut(s) | 3291, 3534, 4788 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1301, 2045, 2087, 3340, 3857 |
| SmlI | CTYRAG | 8 cut(s) | 268, 3291, 3534, 3708, 3759, 4656, 4704, 4788 |
| SmoI | CTYRAG | 8 cut(s) | 268, 3291, 3534, 3708, 3759, 4656, 4704, 4788 |
| SsiI | CCGC | 9 cut(s) | 756, 1907, 2476, 2692, 2972, 3272, 3817, 4145, 4356 |
| SspMI | CTAG | 6 cut(s) | 366, 2309, 2645, 3083, 3944, 4079 |
| StyD4I | CCNGG | 7 cut(s) | 958, 2783, 3091, 3670, 3721, 3772, 4579 |
| StyI | CCWWGG | 3 cut(s) | 2328, 2374, 3428 |
| TaiI | ACGT | 5 cut(s) | 100, 1438, 2001, 3289, 4352 |
| TaqI | TCGA | 9 cut(s) | 972, 2158, 3046, 3292, 3535, 3595, 4337, 4597, 4789 |
| TaqII | GACCGA | 1 cut(s) | 1782 |
| TatI | WGTACW | 3 cut(s) | 907, 1012, 3190 |
| TauI | GCSGC | 2 cut(s) | 1910, 4147 |
| TfiI | GAWTC | 7 cut(s) | 157, 356, 677, 2801, 3110, 3683, 3982 |
| TscAI | CASTG | 6 cut(s) | 1088, 1404, 2760, 3839, 4098, 4116 |
| TspRI | CASTG | 6 cut(s) | 1088, 1404, 2760, 3839, 4098, 4116 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2195 |
| VneI | GTGCAC | 1 cut(s) | 3838 |
| VpaK11BI | GGWCC | 5 cut(s) | 1799, 2198, 2519, 2697, 3947 |
| XapI | RAATTY | 7 cut(s) | 717, 751, 1056, 1949, 2461, 2535, 3620 |
| XbaI | TCTAGA | 1 cut(s) | 365 |
| XceI | RCATGY | 1 cut(s) | 1268 |
| XhoI | CTCGAG | 3 cut(s) | 3291, 3534, 4788 |
| XmiI | GTMKAC | 1 cut(s) | 106 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1788, 2865, 3933 |
| XspI | CTAG | 6 cut(s) | 366, 2309, 2645, 3083, 3944, 4079 |
| ZraI | GACGTC | 1 cut(s) | 98 |