Rh7CG241400

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000827
Physical Location & Seq
Forward (+)
22573855 .. 22576241
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG241400.1

Sequence Viewer

Length: 1653 bp
ATGGGCAGCCAAGAATTTATTCAAGAAGAACAGCATGGTAAGATGGCTGAAGATGAAAGTGGATTTCCAATTCAGCAGCAAGGTGAAGTGAATGGACATCAGATTCAGATACAATGTCAAGAATTTATTGTTGAAAATGGGAATGTTGCAGTAGAGGAGTATAAAGTGACTGAAATACAAGTTGAAGTGACTGAACAGCAGACAGAATGTGGACAGAAAAATCAAGAACAGAACAGTAAGGTGATTGACTATCAAAATGGATCGTCAAAGCCAGAAAATGAACAGAAAGATGAAGTGAATGGACAGAAAAATCAAAGTCAAATACAAGTAACTACTGAGAGTGTTGATATCCACAATGTTGCAGAACAGACTCATGAGGTGACTGAAGAACAAGAAACTGAAGTGACTGAACAACAGAGAGACCATGGGCAGCGAAGTCAAGATGAACAGAATAGTAAGGTGATCGACCGTCAAGATGGATATTCAAAGCAACCAAATGAACAGCTTGTAGTGAGCATTGAAAAGCAGATTGATGCTAAACTGAAATATAAAGCGCCTGAAGATCAAAGTGAAGAACGGTGTCAAAGTAAAGAACAGCAATGTGAAGTGACCGAAGAACATATTGAACGCCTTAAAAGACAAATTCAGTTCCAAGAGGAAGTAGTTGAAGAGATTGACAAGCTGACCAGACCAGAAGCACAGCAAGTTGAGAATGTCTCAGAATTGCAAGAGCAAATTGAGTTATTAAGGAAGATCCTTAATGCTGGCAGTATGCAGAAGTCGTTTTCCAAGAAGCAAGAGAAAGCTGCAGCCATTGCTGTTAATTCAACTCCTCTTACTAGTCAGAAACTGCCCTACCATAGTTCATCAACTTTCTCTATGGAGAATTGTTTAGAATTGTTGAGGATCACGCAAAAACTTCAGGAAAAGACACATAGGGTGCAAGAAAAGAAGGAATATATGGATTGTCGTCTTCCGGCACAAATGAAGCACCACCAGCTGAGGCAACTACGTCCATGGGGTAAAAAGGCATCTGAATCTGATTGCAGGGTATCGAATGAACCCAACTGTCAGGAACTTAAGCAGGAGCAGCAGCAGAGAGATCCAGTACAGGAAAAAAGTCAGGGTGGTCGTAAAGCATTTGAGTTGTCATGTCAAACACAGCAACAGTCACGGGAACCAGCACAGCAGAGGGAATTGCCTCCCGAGGGCCAGAGGCAGTCCAAAACTCAATCGTTAGTCACTACATCTGTGGTGGAATTATCACCAAGAAGGAATCAGGATCCCCAGCAATTAAACATTGGAGTAACTGAAAAGCCTAAAAAACTGAAGAGATCAGCAAAGAAAACAGGCCAAACACAGCTGCAGCAGAGGCAACTTAGATCTCGAGGAAAAATACTGTCTGAATGTAAACAAGTTACAACTAGATCTATGGCAGGTTCATCATTGATTTCAAGTACTGCAAGGTCTCAAGTGGAAAAGCTGGGAATAGAAAATTCATCTCAATCGAAGAAGCAACAAGCAAATCACTGTAATTGGCGAAAGCGGGGAACACCAGAACCTACAACAATGCCAAATGCCATTGGTCCAATCCTCCCTTGCAAAAAAACTAGCATTAGGCCGTCAGATTGTAGAACTTCTCAGTACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

550

Amino Acids

63.07

Weight (kDa)

6.23

Isoelectric Point (pI)

71.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1427
AciI CCGC 1 cut(s) 1546
AclWI GGATC 6 cut(s) 268, 748, 914, 1097, 1277, 1290
AcsI RAATTY 4 cut(s) 14, 122, 642, 1495
AcuI CTGAAG 6 cut(s) 69, 405, 420, 579, 905, 1349
AfaI GTAC 3 cut(s) 1110, 1459, 1646
AfiI CCNNNNNNNGG 1 cut(s) 1208
AflII CTTAAG 1 cut(s) 1079
AgsI TTSAA 9 cut(s) 23, 134, 185, 486, 521, 626, 668, 828, 1455
AhlI ACTAGT 1 cut(s) 839
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 6 cut(s) 505, 682, 806, 1000, 1363, 1483
AluI AGCT 6 cut(s) 505, 682, 806, 1000, 1363, 1483
Alw26I GTCTC 3 cut(s) 414, 721, 1473
AlwI GGATC 6 cut(s) 268, 748, 914, 1097, 1277, 1290
AlwNI CAGNNNCTG 1 cut(s) 850
Ama87I CYCGRG 2 cut(s) 1205, 1386
AoxI GGCC 3 cut(s) 1210, 1351, 1619
ApeKI GCWGC 9 cut(s) 6, 76, 430, 806, 809, 1090, 1093, 1363, 1366
ApoI RAATTY 4 cut(s) 14, 122, 642, 1495
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 2 cut(s) 1210, 1586
AsuHPI GGTGA 5 cut(s) 95, 253, 391, 472, 1257
AvaI CYCGRG 2 cut(s) 1205, 1386
AvaII GGWCC 1 cut(s) 1586
BamHI GGATCC 1 cut(s) 1282
BbsI GAAGAC 1 cut(s) 965
BbvCI CCTCAGC 1 cut(s) 1001
BbvI GCAGC 9 cut(s) 18, 88, 442, 793, 821, 1102, 1105, 1350, 1378
BccI CCATC 2 cut(s) 37, 470
BceAI ACGGC 1 cut(s) 1606
BcoDI GTCTC 3 cut(s) 414, 721, 1473
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 3 cut(s) 840, 1425, 1611
BfmI CTRYAG 2 cut(s) 807, 1364
BfoI RGCGCY 1 cut(s) 557
BfrI CTTAAG 1 cut(s) 1079
BfuAI ACCTGC 1 cut(s) 1427
BglII AGATCT 2 cut(s) 1382, 1427
BisI GCNGC 9 cut(s) 7, 77, 431, 807, 810, 1091, 1094, 1364, 1367
BlsI GCNGC 9 cut(s) 8, 78, 432, 808, 811, 1092, 1095, 1365, 1368
BmcAI AGTACT 2 cut(s) 1459, 1646
Bme18I GGWCC 1 cut(s) 1586
BmeT110I CYCGRG 2 cut(s) 1205, 1386
BmgT120I GGNCC 2 cut(s) 1210, 1586
BmiI GGNNCC 2 cut(s) 1179, 1284
BmsI GCATC 2 cut(s) 523, 1040
BpiI GAAGAC 1 cut(s) 965
BplI GAGNNNNNCTC 2 cut(s) 701, 733
Bpu10I CCTNAGC 1 cut(s) 1001
BpuEI CTTGAG 1 cut(s) 1455
BsaI GGTCTC 2 cut(s) 414, 1473
BsaJI CCNNGG 3 cut(s) 424, 1016, 1206
Bsc4I CCNNNNNNNGG 1 cut(s) 1208
Bse1I ACTGG 1 cut(s) 1106
Bse3DI GCAATG 2 cut(s) 605, 813
BseDI CCNNGG 3 cut(s) 424, 1016, 1206
BseLI CCNNNNNNNGG 1 cut(s) 1208
BseMI GCAATG 2 cut(s) 605, 813
BseMII CTCAG 3 cut(s) 327, 732, 992
BseNI ACTGG 1 cut(s) 1106
BseRI GAGGAG 2 cut(s) 170, 822
BseXI GCAGC 9 cut(s) 18, 88, 442, 793, 821, 1102, 1105, 1350, 1378
BseYI CCCAGC 2 cut(s) 1287, 1483
Bsh1285I CGRYCG 1 cut(s) 469
BshFI GGCC 3 cut(s) 1212, 1353, 1621
BsiEI CGRYCG 1 cut(s) 469
BsiHKCI CYCGRG 2 cut(s) 1205, 1386
BsiSI CCGG 1 cut(s) 977
BslI CCNNNNNNNGG 1 cut(s) 1208
BsmAI GTCTC 3 cut(s) 414, 721, 1473
BsnI GGCC 3 cut(s) 1212, 1353, 1621
Bso31I GGTCTC 2 cut(s) 414, 1473
BsoBI CYCGRG 2 cut(s) 1205, 1386
Bsp19I CCATGG 2 cut(s) 424, 1016
BspACI CCGC 1 cut(s) 1546
BspANI GGCC 3 cut(s) 1212, 1353, 1621
BspCNI CTCAG 3 cut(s) 328, 731, 993
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 1179, 1284
BspMAI CTGCAG 2 cut(s) 811, 1368
BspMI ACCTGC 1 cut(s) 1427
BspPI GGATC 6 cut(s) 268, 748, 914, 1097, 1277, 1290
BspTI CTTAAG 1 cut(s) 1079
BspTNI GGTCTC 2 cut(s) 414, 1473
BsrDI GCAATG 2 cut(s) 605, 813
BsrI ACTGG 1 cut(s) 1106
BssECI CCNNGG 3 cut(s) 424, 1016, 1206
BssT1I CCWWGG 2 cut(s) 424, 1016
Bst4CI ACNGT 7 cut(s) 236, 470, 579, 1070, 1170, 1401, 1532
Bst6I CTCTTC 2 cut(s) 663, 1325
BstAFI CTTAAG 1 cut(s) 1079
BstAPI GCANNNNNTGC 1 cut(s) 815
BstC8I GCNNGC 1 cut(s) 766
BstDEI CTNAG 5 cut(s) 336, 718, 1001, 1379, 1641
BstDSI CCRYGG 2 cut(s) 424, 1016
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 1 cut(s) 556
BstMAI GTCTC 3 cut(s) 414, 721, 1473
BstMCI CGRYCG 1 cut(s) 469
BstMWI GCNNNNNNNGC 4 cut(s) 815, 997, 1090, 1372
BstSFI CTRYAG 2 cut(s) 807, 1364
BstV1I GCAGC 9 cut(s) 18, 88, 442, 793, 821, 1102, 1105, 1350, 1378
BstV2I GAAGAC 1 cut(s) 965
BstX2I RGATCY 5 cut(s) 753, 1102, 1282, 1382, 1427
BstYI RGATCY 5 cut(s) 753, 1102, 1282, 1382, 1427
BsuRI GGCC 3 cut(s) 1212, 1353, 1621
BtgI CCRYGG 2 cut(s) 424, 1016
BtsIMutI CAGTG 1 cut(s) 1528
BveI ACCTGC 1 cut(s) 1427
Cac8I GCNNGC 1 cut(s) 766
CaiI CAGNNNCTG 1 cut(s) 850
CciI TCATGA 1 cut(s) 373
CfoI GCGC 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 1210, 1586
Csp6I GTAC 3 cut(s) 1109, 1458, 1645
CviAII CATG 5 cut(s) 35, 374, 425, 1017, 1152
CviQI GTAC 3 cut(s) 1109, 1458, 1645
DdeI CTNAG 5 cut(s) 336, 718, 1001, 1379, 1641
Eam1104I CTCTTC 2 cut(s) 663, 1325
EarI CTCTTC 2 cut(s) 663, 1325
Eco130I CCWWGG 2 cut(s) 424, 1016
Eco31I GGTCTC 2 cut(s) 414, 1473
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 1586
Eco57I CTGAAG 6 cut(s) 69, 405, 420, 579, 905, 1349
Eco88I CYCGRG 2 cut(s) 1205, 1386
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 424, 1016
ErhI CCWWGG 2 cut(s) 424, 1016
FaeI CATG 5 cut(s) 38, 377, 428, 1020, 1155
FatI CATG 5 cut(s) 34, 373, 424, 1016, 1151
FauI CCCGC 1 cut(s) 1539
Fnu4HI GCNGC 9 cut(s) 7, 77, 431, 807, 810, 1091, 1094, 1364, 1367
Fsp4HI GCNGC 9 cut(s) 7, 77, 431, 807, 810, 1091, 1094, 1364, 1367
FspBI CTAG 3 cut(s) 840, 1425, 1611
GlaI GCGC 1 cut(s) 555
GluI GCNGC 9 cut(s) 7, 77, 431, 807, 810, 1091, 1094, 1364, 1367
GsaI CCCAGC 2 cut(s) 1291, 1487
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 3 cut(s) 1212, 1353, 1621
HapII CCGG 1 cut(s) 977
HhaI GCGC 1 cut(s) 556
Hin1II CATG 5 cut(s) 38, 377, 428, 1020, 1155
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HinfI GANTC 4 cut(s) 103, 370, 1037, 1276
HpaII CCGG 1 cut(s) 977
HphI GGTGA 5 cut(s) 95, 253, 391, 472, 1257
Hpy166II GTNNAC 2 cut(s) 212, 1412
Hpy188I TCNGA 8 cut(s) 102, 108, 721, 846, 1036, 1042, 1405, 1627
Hpy8I GTNNAC 2 cut(s) 212, 1412
HpyAV CCTTC 2 cut(s) 946, 1266
HpyCH4III ACNGT 7 cut(s) 236, 470, 579, 1070, 1170, 1401, 1532
HpyCH4IV ACGT 1 cut(s) 1012
HpyF10VI GCNNNNNNNGC 4 cut(s) 815, 997, 1090, 1372
HpyF3I CTNAG 5 cut(s) 336, 718, 1001, 1379, 1641
HpySE526I ACGT 1 cut(s) 1012
Hsp92II CATG 5 cut(s) 38, 377, 428, 1020, 1155
HspAI GCGC 1 cut(s) 554
LmnI GCTCC 1 cut(s) 1087
Lsp1109I GCAGC 9 cut(s) 18, 88, 442, 793, 821, 1102, 1105, 1350, 1378
LweI GCATC 2 cut(s) 523, 1040
MaeI CTAG 3 cut(s) 840, 1425, 1611
MaeII ACGT 1 cut(s) 1012
MflI RGATCY 5 cut(s) 753, 1102, 1282, 1382, 1427
MlyI GAGTC 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 6 cut(s) 633, 746, 759, 822, 1080, 1295
MspA1I CMGCKG 2 cut(s) 1000, 1363
MspCI CTTAAG 1 cut(s) 1079
MspI CCGG 1 cut(s) 977
MwoI GCNNNNNNNGC 4 cut(s) 815, 997, 1090, 1372
NcoI CCATGG 2 cut(s) 424, 1016
NlaIII CATG 5 cut(s) 38, 377, 428, 1020, 1155
NlaIV GGNNCC 2 cut(s) 1179, 1284
NmuCI GTSAC 7 cut(s) 166, 187, 379, 403, 607, 1170, 1240
PaeR7I CTCGAG 1 cut(s) 1386
PagI TCATGA 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 3 cut(s) 103, 1037, 1276
PkrI GCNGC 9 cut(s) 8, 78, 432, 808, 811, 1092, 1095, 1365, 1368
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PspFI CCCAGC 2 cut(s) 1287, 1483
PspN4I GGNNCC 2 cut(s) 1179, 1284
PspPI GGNCC 2 cut(s) 1210, 1586
PstI CTGCAG 2 cut(s) 811, 1368
PstNI CAGNNNCTG 1 cut(s) 850
PsuI RGATCY 5 cut(s) 753, 1102, 1282, 1382, 1427
PvuII CAGCTG 2 cut(s) 1000, 1363
RsaI GTAC 3 cut(s) 1110, 1459, 1646
RsaNI GTAC 3 cut(s) 1109, 1458, 1645
SaqAI TTAA 6 cut(s) 633, 746, 759, 822, 1080, 1295
SatI GCNGC 9 cut(s) 7, 77, 431, 807, 810, 1091, 1094, 1364, 1367
Sau96I GGNCC 2 cut(s) 1210, 1586
ScaI AGTACT 2 cut(s) 1459, 1646
SchI GAGTC 1 cut(s) 364
SfaNI GCATC 2 cut(s) 523, 1040
SfcI CTRYAG 2 cut(s) 807, 1364
Sfr274I CTCGAG 1 cut(s) 1386
SinI GGWCC 1 cut(s) 1586
SlaI CTCGAG 1 cut(s) 1386
SmlI CTYRAG 3 cut(s) 1079, 1386, 1470
SmoI CTYRAG 3 cut(s) 1079, 1386, 1470
SpeI ACTAGT 1 cut(s) 839
SsiI CCGC 1 cut(s) 1546
SspMI CTAG 3 cut(s) 840, 1425, 1611
StyI CCWWGG 2 cut(s) 424, 1016
TaaI ACNGT 7 cut(s) 236, 470, 579, 1070, 1170, 1401, 1532
TaiI ACGT 1 cut(s) 1015
TaqI TCGA 4 cut(s) 465, 1055, 1387, 1508
TaqII GACCGA 1 cut(s) 626
TatI WGTACW 3 cut(s) 1108, 1457, 1644
TfiI GAWTC 3 cut(s) 103, 1037, 1276
Tru1I TTAA 6 cut(s) 633, 746, 759, 822, 1080, 1295
Tru9I TTAA 6 cut(s) 633, 746, 759, 822, 1080, 1295
TscAI CASTG 1 cut(s) 1535
TseFI GTSAC 7 cut(s) 166, 187, 379, 403, 607, 1170, 1240
TseI GCWGC 9 cut(s) 6, 76, 430, 806, 809, 1090, 1093, 1363, 1366
Tsp45I GTSAC 7 cut(s) 166, 187, 379, 403, 607, 1170, 1240
TspRI CASTG 1 cut(s) 1535
Vha464I CTTAAG 1 cut(s) 1079
VpaK11BI GGWCC 1 cut(s) 1586
XapI RAATTY 4 cut(s) 14, 122, 642, 1495
XhoI CTCGAG 1 cut(s) 1386
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 3 cut(s) 840, 1425, 1611
ZrmI AGTACT 2 cut(s) 1459, 1646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.