Domain in histone families 1 and 5
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Linker_histone | PF00538 | 87 - 148 | 6.3e-11 | linker histone H1 and H5 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 229 |
| AciI | CCGC | 1 cut(s) | 1085 |
| AclWI | GGATC | 1 cut(s) | 204 |
| AcsI | RAATTY | 5 cut(s) | 11, 341, 732, 1190, 1236 |
| AcuI | CTGAAG | 3 cut(s) | 78, 345, 717 |
| AdeI | CACNNNGTG | 1 cut(s) | 910 |
| AfaI | GTAC | 3 cut(s) | 690, 754, 1245 |
| AflIII | ACRYGT | 1 cut(s) | 1201 |
| AluBI | AGCT | 5 cut(s) | 136, 160, 412, 551, 695 |
| AluI | AGCT | 5 cut(s) | 136, 160, 412, 551, 695 |
| Alw26I | GTCTC | 1 cut(s) | 87 |
| AlwI | GGATC | 1 cut(s) | 204 |
| ApeKI | GCWGC | 1 cut(s) | 790 |
| ApoI | RAATTY | 5 cut(s) | 11, 341, 732, 1190, 1236 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 49, 1029 |
| AspS9I | GGNCC | 1 cut(s) | 1040 |
| AsuHPI | GGTGA | 3 cut(s) | 94, 251, 488 |
| AvaII | GGWCC | 1 cut(s) | 1040 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 672, 704 |
| BbsI | GAAGAC | 2 cut(s) | 389, 524 |
| BbvI | GCAGC | 1 cut(s) | 802 |
| BccI | CCATC | 2 cut(s) | 145, 716 |
| BceAI | ACGGC | 1 cut(s) | 257 |
| BcoDI | GTCTC | 1 cut(s) | 87 |
| BfaI | CTAG | 2 cut(s) | 489, 552 |
| BfmI | CTRYAG | 1 cut(s) | 1155 |
| BisI | GCNGC | 1 cut(s) | 791 |
| BlsI | GCNGC | 1 cut(s) | 792 |
| Bme18I | GGWCC | 1 cut(s) | 1040 |
| BmgT120I | GGNCC | 1 cut(s) | 1040 |
| BpiI | GAAGAC | 2 cut(s) | 389, 524 |
| BpuEI | CTTGAG | 1 cut(s) | 412 |
| BsaAI | YACGTR | 1 cut(s) | 284 |
| BsaI | GGTCTC | 1 cut(s) | 87 |
| BsaWI | WCCGGW | 1 cut(s) | 193 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 417, 447, 1005, 1035, 1109, 1139 |
| BseMII | CTCAG | 4 cut(s) | 561, 591, 704, 1212 |
| BseRI | GAGGAG | 2 cut(s) | 96, 311 |
| BseXI | GCAGC | 1 cut(s) | 802 |
| BsgI | GTGCAG | 1 cut(s) | 809 |
| BsiSI | CCGG | 1 cut(s) | 194 |
| BslFI | GGGAC | 1 cut(s) | 488 |
| BsmAI | GTCTC | 1 cut(s) | 87 |
| BsmFI | GGGAC | 1 cut(s) | 488 |
| Bso31I | GGTCTC | 1 cut(s) | 87 |
| Bsp1407I | TGTACA | 1 cut(s) | 1243 |
| Bsp143I | GATC | 3 cut(s) | 108, 196, 256 |
| BspACI | CCGC | 1 cut(s) | 1085 |
| BspCNI | CTCAG | 4 cut(s) | 560, 592, 705, 1213 |
| BspPI | GGATC | 1 cut(s) | 204 |
| BspTNI | GGTCTC | 1 cut(s) | 87 |
| BsrGI | TGTACA | 1 cut(s) | 1243 |
| BssMI | GATC | 3 cut(s) | 108, 196, 256 |
| Bst4CI | ACNGT | 6 cut(s) | 365, 642, 747, 936, 1005, 1156 |
| Bst6I | CTCTTC | 1 cut(s) | 73 |
| BstAUI | TGTACA | 1 cut(s) | 1243 |
| BstBAI | YACGTR | 1 cut(s) | 284 |
| BstC8I | GCNNGC | 2 cut(s) | 138, 162 |
| BstDEI | CTNAG | 5 cut(s) | 547, 600, 713, 1128, 1221 |
| BstKTI | GATC | 3 cut(s) | 111, 199, 259 |
| BstMAI | GTCTC | 1 cut(s) | 87 |
| BstMBI | GATC | 3 cut(s) | 108, 196, 256 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 622, 1025 |
| BstNSI | RCATGY | 2 cut(s) | 253, 1205 |
| BstSFI | CTRYAG | 1 cut(s) | 1155 |
| BstSNI | TACGTA | 1 cut(s) | 284 |
| BstV1I | GCAGC | 1 cut(s) | 802 |
| BstV2I | GAAGAC | 2 cut(s) | 389, 524 |
| BtsI | GCAGTG | 1 cut(s) | 1262 |
| BtsIMutI | CAGTG | 3 cut(s) | 752, 941, 1262 |
| Cac8I | GCNNGC | 2 cut(s) | 138, 162 |
| Cfr13I | GGNCC | 1 cut(s) | 1040 |
| Csp6I | GTAC | 3 cut(s) | 689, 753, 1244 |
| CviAII | CATG | 6 cut(s) | 112, 250, 380, 812, 1010, 1202 |
| CviJI | RGCY | 9 cut(s) | 136, 160, 377, 412, 551, 695, 777, 914, 1151 |
| CviKI_1 | RGCY | 9 cut(s) | 136, 160, 377, 412, 551, 695, 777, 914, 1151 |
| CviQI | GTAC | 3 cut(s) | 689, 753, 1244 |
| DdeI | CTNAG | 5 cut(s) | 547, 600, 713, 1128, 1221 |
| DpnI | GATC | 3 cut(s) | 110, 198, 258 |
| DpnII | GATC | 3 cut(s) | 108, 196, 256 |
| DraI | TTTAAA | 1 cut(s) | 1275 |
| DraIII | CACNNNGTG | 1 cut(s) | 910 |
| Eam1104I | CTCTTC | 1 cut(s) | 73 |
| EarI | CTCTTC | 1 cut(s) | 73 |
| Eco105I | TACGTA | 1 cut(s) | 284 |
| Eco31I | GGTCTC | 1 cut(s) | 87 |
| Eco32I | GATATC | 1 cut(s) | 211 |
| Eco47I | GGWCC | 1 cut(s) | 1040 |
| Eco57I | CTGAAG | 3 cut(s) | 78, 345, 717 |
| EcoRV | GATATC | 1 cut(s) | 211 |
| FaeI | CATG | 6 cut(s) | 115, 253, 383, 815, 1013, 1205 |
| FaqI | GGGAC | 1 cut(s) | 488 |
| FatI | CATG | 6 cut(s) | 111, 249, 379, 811, 1009, 1201 |
| FauNDI | CATATG | 1 cut(s) | 828 |
| FblI | GTMKAC | 1 cut(s) | 229 |
| Fnu4HI | GCNGC | 1 cut(s) | 791 |
| Fsp4HI | GCNGC | 1 cut(s) | 791 |
| FspBI | CTAG | 2 cut(s) | 489, 552 |
| GluI | GCNGC | 1 cut(s) | 791 |
| HapII | CCGG | 1 cut(s) | 194 |
| Hin1II | CATG | 6 cut(s) | 115, 253, 383, 815, 1013, 1205 |
| HincII | GTYRAC | 1 cut(s) | 321 |
| HindII | GTYRAC | 1 cut(s) | 321 |
| HindIII | AAGCTT | 1 cut(s) | 134 |
| HinfI | GANTC | 4 cut(s) | 231, 394, 479, 520 |
| HpaII | CCGG | 1 cut(s) | 194 |
| HphI | GGTGA | 3 cut(s) | 94, 251, 488 |
| Hpy166II | GTNNAC | 4 cut(s) | 117, 230, 321, 1244 |
| Hpy188I | TCNGA | 8 cut(s) | 58, 172, 201, 525, 822, 1072, 1188, 1222 |
| Hpy188III | TCNNGA | 5 cut(s) | 42, 391, 489, 874, 1038 |
| Hpy8I | GTNNAC | 4 cut(s) | 117, 230, 321, 1244 |
| HpyAV | CCTTC | 2 cut(s) | 68, 520 |
| HpyCH4III | ACNGT | 6 cut(s) | 365, 642, 747, 936, 1005, 1156 |
| HpyCH4IV | ACGT | 1 cut(s) | 283 |
| HpyCH4V | TGCA | 6 cut(s) | 383, 790, 832, 1114, 1181, 1255 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 622, 1025 |
| HpyF3I | CTNAG | 5 cut(s) | 547, 600, 713, 1128, 1221 |
| HpySE526I | ACGT | 1 cut(s) | 283 |
| Hsp92II | CATG | 6 cut(s) | 115, 253, 383, 815, 1013, 1205 |
| Kzo9I | GATC | 3 cut(s) | 108, 196, 256 |
| Lsp1109I | GCAGC | 1 cut(s) | 802 |
| MaeI | CTAG | 2 cut(s) | 489, 552 |
| MaeII | ACGT | 1 cut(s) | 283 |
| MaeIII | GTNAC | 4 cut(s) | 27, 595, 700, 1005 |
| MalI | GATC | 3 cut(s) | 110, 198, 258 |
| MboI | GATC | 3 cut(s) | 108, 196, 256 |
| MfeI | CAATTG | 2 cut(s) | 291, 953 |
| MlyI | GAGTC | 3 cut(s) | 225, 403, 514 |
| MmeI | TCCRAC | 2 cut(s) | 488, 1213 |
| MnlI | CCTC | 9 cut(s) | 74, 187, 289, 301, 414, 548, 612, 1039, 1216 |
| MroXI | GAANNNNTTC | 2 cut(s) | 49, 1029 |
| MseI | TTAA | 4 cut(s) | 23, 87, 1103, 1274 |
| MspI | CCGG | 1 cut(s) | 194 |
| MunI | CAATTG | 2 cut(s) | 291, 953 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 622, 1025 |
| NdeI | CATATG | 1 cut(s) | 828 |
| NdeII | GATC | 3 cut(s) | 108, 196, 256 |
| NlaIII | CATG | 6 cut(s) | 115, 253, 383, 815, 1013, 1205 |
| NmuCI | GTSAC | 2 cut(s) | 27, 595 |
| NspI | RCATGY | 2 cut(s) | 253, 1205 |
| PciI | ACATGT | 1 cut(s) | 1201 |
| PdmI | GAANNNNTTC | 2 cut(s) | 49, 1029 |
| PfeI | GAWTC | 1 cut(s) | 479 |
| PkrI | GCNGC | 1 cut(s) | 792 |
| PleI | GAGTC | 3 cut(s) | 225, 402, 514 |
| PpsI | GAGTC | 3 cut(s) | 225, 402, 514 |
| Ppu21I | YACGTR | 1 cut(s) | 284 |
| PscI | ACATGT | 1 cut(s) | 1201 |
| PspPI | GGNCC | 1 cut(s) | 1040 |
| RsaI | GTAC | 3 cut(s) | 690, 754, 1245 |
| RsaNI | GTAC | 3 cut(s) | 689, 753, 1244 |
| SaqAI | TTAA | 4 cut(s) | 23, 87, 1103, 1274 |
| SatI | GCNGC | 1 cut(s) | 791 |
| Sau3AI | GATC | 3 cut(s) | 108, 196, 256 |
| Sau96I | GGNCC | 1 cut(s) | 1040 |
| SchI | GAGTC | 3 cut(s) | 225, 403, 514 |
| SfcI | CTRYAG | 1 cut(s) | 1155 |
| SinI | GGWCC | 1 cut(s) | 1040 |
| SmlI | CTYRAG | 1 cut(s) | 391 |
| SmoI | CTYRAG | 1 cut(s) | 391 |
| SnaBI | TACGTA | 1 cut(s) | 284 |
| SsiI | CCGC | 1 cut(s) | 1085 |
| SspI | AATATT | 1 cut(s) | 1171 |
| SspMI | CTAG | 2 cut(s) | 489, 552 |
| TaaI | ACNGT | 6 cut(s) | 365, 642, 747, 936, 1005, 1156 |
| TaiI | ACGT | 1 cut(s) | 286 |
| TaqII | GACCGA | 1 cut(s) | 1023 |
| TatI | WGTACW | 3 cut(s) | 688, 752, 1243 |
| TfiI | GAWTC | 1 cut(s) | 479 |
| Tru1I | TTAA | 4 cut(s) | 23, 87, 1103, 1274 |
| Tru9I | TTAA | 4 cut(s) | 23, 87, 1103, 1274 |
| TscAI | CASTG | 3 cut(s) | 752, 941, 1262 |
| TseFI | GTSAC | 2 cut(s) | 27, 595 |
| TseI | GCWGC | 1 cut(s) | 790 |
| Tsp45I | GTSAC | 2 cut(s) | 27, 595 |
| TspDTI | ATGAA | 4 cut(s) | 17, 576, 699, 828 |
| TspRI | CASTG | 3 cut(s) | 752, 941, 1262 |
| VpaK11BI | GGWCC | 1 cut(s) | 1040 |
| XapI | RAATTY | 5 cut(s) | 11, 341, 732, 1190, 1236 |
| XbaI | TCTAGA | 1 cut(s) | 488 |
| XceI | RCATGY | 2 cut(s) | 253, 1205 |
| XmiI | GTMKAC | 1 cut(s) | 229 |
| XmnI | GAANNNNTTC | 2 cut(s) | 49, 1029 |
| XspI | CTAG | 2 cut(s) | 489, 552 |