Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

21802819 .. 21804855

Gene Structure 2037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAACTTGCGTTCATGCAGCCAAGCTGCATCACAACCTGAGCTTGTTGTATCGATGGCAAAATCATTGCCCTCAGAACACCAGTATGAGCAGCCACAAGAAATGAAGCATCAAGGCCTACGGAGGCCTAAGTTGAATTCACAAAATCAGCATAATGGTGAACTTCAGCCCCCAAAGCATCTTGAGCAGCCACAGAAACCAAGAGGCAGGGCTCCTAAACGAAAACTGGATGTGGCTGCAAATGAAGATGTATCATTGCCTGCTAAGTATCAGAAGCTGCAGGATGAACCAGAAAATCAAAGACAAGAGAGGCCTCATCAGTTGAAAAGAAATATGGTTTTGGGTCTTTTTGCCGCATCAAAATATGAACCCTGCTCTGTCGATGACAGAATCACTGTTCTTAAAGGGATGTCGCTGACCACGGTTGAGGACGTCGGTGGGGTTGCGACGGGTCAAGCTCTATCGGCGGACGGAAACAACGACAACGAAGAAACAAGAGGGAGGTCTACTAAGCGGGGTCTTGCATTTCTTCAAGGAGCATGTATCACCATATGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.82

Weight (kDa)

9.19

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	3 cut(s)	354, 467, 514
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	432
AgsI	TTSAA	3 cut(s)	136, 325, 533
AluBI	AGCT	4 cut(s)	26, 43, 277, 458
AluI	AGCT	4 cut(s)	26, 43, 277, 458
AlwNI	CAGNNNCTG	1 cut(s)	277
AoxI	GGCC	3 cut(s)	115, 125, 311
ApeKI	GCWGC	6 cut(s)	18, 26, 91, 187, 236, 277
ApoI	RAATTY	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	170, 538
BanII	GRGCYC	1 cut(s)	214
BbvI	GCAGC	6 cut(s)	13, 30, 103, 199, 223, 264
BccI	CCATC	1 cut(s)	49
BfmI	CTRYAG	1 cut(s)	278
BisI	GCNGC	7 cut(s)	19, 27, 92, 188, 237, 278, 354
BlsI	GCNGC	7 cut(s)	20, 28, 93, 189, 238, 279, 355
BmiI	GGNNCC	1 cut(s)	213
BmsI	GCATC	4 cut(s)	38, 118, 187, 365
Bpu10I	CCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	420
Bse1I	ACTGG	2 cut(s)	82, 231
Bse3DI	GCAATG	2 cut(s)	65, 254
BseCI	ATCGAT	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	3 cut(s)	235, 289, 414
BseMI	GCAATG	2 cut(s)	65, 254
BseMII	CTCAG	2 cut(s)	30, 87
BseNI	ACTGG	2 cut(s)	82, 231
BseXI	GCAGC	6 cut(s)	13, 30, 103, 199, 223, 264
BshFI	GGCC	3 cut(s)	117, 127, 313
BshVI	ATCGAT	1 cut(s)	53
BsnI	GGCC	3 cut(s)	117, 127, 313
Bsp1286I	GDGCHC	1 cut(s)	214
BspACI	CCGC	3 cut(s)	354, 467, 514
BspANI	GGCC	3 cut(s)	117, 127, 313
BspCNI	CTCAG	2 cut(s)	31, 86
BspDI	ATCGAT	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	282
BsrDI	GCAATG	2 cut(s)	65, 254
BsrI	ACTGG	2 cut(s)	82, 231
BssECI	CCNNGG	1 cut(s)	420
BssNI	GRCGYC	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	397, 424
BstACI	GRCGYC	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	5 cut(s)	39, 73, 129, 264, 510
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	235, 289, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 184, 464
BstNSI	RCATGY	1 cut(s)	543
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	6 cut(s)	13, 30, 103, 199, 223, 264
Bsu15I	ATCGAT	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	117, 127, 313
BsuTUI	ATCGAT	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	3 cut(s)	235, 289, 414
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	53
CviAII	CATG	2 cut(s)	15, 540
DdeI	CTNAG	5 cut(s)	39, 73, 129, 264, 510
EciI	GGCGGA	1 cut(s)	482
Eco147I	AGGCCT	3 cut(s)	117, 127, 313
Eco24I	GRGCYC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	214
FaeI	CATG	2 cut(s)	18, 543
FaiI	YATR	8 cut(s)	16, 87, 153, 335, 366, 541, 551, 553
FatI	CATG	2 cut(s)	14, 539
FauI	CCCGC	1 cut(s)	507
FauNDI	CATATG	1 cut(s)	551
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	7 cut(s)	19, 27, 92, 188, 237, 278, 354
FokI	GGATG	3 cut(s)	242, 296, 421
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	7 cut(s)	19, 27, 92, 188, 237, 278, 354
GluI	GCNGC	7 cut(s)	19, 27, 92, 188, 237, 278, 354
HaeIII	GGCC	3 cut(s)	117, 127, 313
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	2 cut(s)	18, 543
HinfI	GANTC	1 cut(s)	390
HphI	GGTGA	2 cut(s)	170, 538
Hpy166II	GTNNAC	2 cut(s)	161, 507
Hpy188I	TCNGA	2 cut(s)	76, 273
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	2 cut(s)	161, 507
Hpy99I	CGWCG	2 cut(s)	437, 451
HpyCH4III	ACNGT	2 cut(s)	397, 424
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	5 cut(s)	18, 29, 239, 280, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 184, 464
HpyF3I	CTNAG	5 cut(s)	39, 73, 129, 264, 510
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	18, 543
LmnI	GCTCC	2 cut(s)	217, 536
LpnPI	CCDG	8 cut(s)	51, 95, 193, 212, 266, 273, 303, 385
Lsp1109I	GCAGC	6 cut(s)	13, 30, 103, 199, 223, 264
LweI	GCATC	4 cut(s)	38, 118, 187, 365
MaeII	ACGT	1 cut(s)	432
MboII	GAAGA	3 cut(s)	257, 500, 521
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	8 cut(s)	82, 117, 197, 303, 324, 421, 491, 495
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	2 cut(s)	84, 156
MwoI	GCNNNNNNNGC	3 cut(s)	175, 184, 464
NdeI	CATATG	1 cut(s)	551
NlaIII	CATG	2 cut(s)	18, 543
NlaIV	GGNNCC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	543
PceI	AGGCCT	3 cut(s)	117, 127, 313
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	7 cut(s)	20, 28, 93, 189, 238, 279, 355
PspN4I	GGNNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	84, 156
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	7 cut(s)	19, 27, 92, 188, 237, 278, 354
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	7 cut(s)	28, 40, 45, 279, 435, 460, 506
SfaNI	GCATC	4 cut(s)	38, 118, 187, 365
SfcI	CTRYAG	1 cut(s)	278
SmiMI	CAYNNNNRTG	2 cut(s)	84, 156
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	136
SseBI	AGGCCT	3 cut(s)	117, 127, 313
SsiI	CCGC	3 cut(s)	354, 467, 514
StuI	AGGCCT	3 cut(s)	117, 127, 313
TaaI	ACNGT	2 cut(s)	397, 424
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	53, 381
TasI	AATT	1 cut(s)	136
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	6 cut(s)	18, 26, 91, 187, 236, 277
TspDTI	ATGAA	5 cut(s)	17, 119, 258, 300, 381
TspGWI	ACGGA	2 cut(s)	136, 486
TspRI	CASTG	1 cut(s)	400
XapI	RAATTY	1 cut(s)	136
XceI	RCATGY	1 cut(s)	543
XmiI	GTMKAC	1 cut(s)	506
ZraI	GACGTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.